CCAAT enhancer-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72440 |
| fragaria_vesca | FvH4_6g35460 FvH4_6g35460 |
| malus_domestica | MD09G1175700.v1.1 MD17G1151100.v1.1 |
| prunus_persica | Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 |
| pyrus_communis | pycom09g09340 pycom09g09350 pycom17g14440 |
| rosa_chinensis | RchiOBHm_Chr2g0147011 |
| rosa_laevigata | RLG00000020238 |
| rosa_multiflora | Rmu_co8429717.1_g000001 Rmu_sc0001880.1_g000035 |
| rosa_roxburghii | Rroxscaffold_2G00099760 |
| rosa_rugosa | Rorug02G0398000 |
| rosa_samantha | Rh2AG455000 Rh2BG467300 Rh2CG442400 Rh2DG476500 Rh7BG367700 |
| rosa_wichuraiana | Rw2G037120 Rw2G037220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 5 cut(s) | 34, 710, 1729, 2401, 2766 |
| AccI | GTMKAC | 1 cut(s) | 2286 |
| AccII | CGCG | 2 cut(s) | 1144, 2916 |
| AciI | CCGC | 7 cut(s) | 5, 443, 793, 1142, 1757, 2084, 2916 |
| AclI | AACGTT | 1 cut(s) | 1234 |
| AclWI | GGATC | 2 cut(s) | 2147, 2804 |
| AcoI | YGGCCR | 4 cut(s) | 480, 794, 1139, 2448 |
| AcsI | RAATTY | 4 cut(s) | 235, 1519, 2336, 2509 |
| AcuI | CTGAAG | 7 cut(s) | 108, 1724, 1733, 1968, 2040, 2223, 2682 |
| AfaI | GTAC | 4 cut(s) | 1269, 1734, 2118, 2217 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 585, 657, 1821, 2764 |
| AflII | CTTAAG | 1 cut(s) | 776 |
| AflIII | ACRYGT | 1 cut(s) | 2227 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 535 |
| AjnI | CCWGG | 2 cut(s) | 154, 2140 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1647, 1679 |
| AleI | CACNNNNGTG | 1 cut(s) | 1953 |
| Alw21I | GWGCWC | 3 cut(s) | 54, 1836, 2235 |
| Alw26I | GTCTC | 7 cut(s) | 666, 809, 1020, 1453, 1918, 2769, 3021 |
| Alw44I | GTGCAC | 1 cut(s) | 2231 |
| AlwI | GGATC | 2 cut(s) | 2147, 2804 |
| Ama87I | CYCGRG | 1 cut(s) | 1450 |
| AoxI | GGCC | 8 cut(s) | 91, 480, 794, 1139, 1217, 2274, 2448, 2650 |
| ApaLI | GTGCAC | 1 cut(s) | 2231 |
| ApoI | RAATTY | 4 cut(s) | 235, 1519, 2336, 2509 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1064, 1096 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 744, 1878, 2049 |
| AspLEI | GCGC | 3 cut(s) | 1146, 2163, 2916 |
| AspS9I | GGNCC | 7 cut(s) | 158, 588, 1217, 1480, 2274, 2429, 2755 |
| AsuC2I | CCSGG | 2 cut(s) | 592, 2468 |
| AsuHPI | GGTGA | 6 cut(s) | 460, 697, 1120, 1304, 2615, 2684 |
| AsuII | TTCGAA | 1 cut(s) | 266 |
| AsuNHI | GCTAGC | 1 cut(s) | 371 |
| AvaI | CYCGRG | 1 cut(s) | 1450 |
| AvaII | GGWCC | 5 cut(s) | 158, 588, 1480, 2429, 2755 |
| BaeGI | GKGCMC | 1 cut(s) | 2235 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BanII | GRGCYC | 2 cut(s) | 1154, 2172 |
| BbsI | GAAGAC | 5 cut(s) | 111, 303, 956, 2473, 2727 |
| Bbv12I | GWGCWC | 3 cut(s) | 54, 1836, 2235 |
| BbvCI | CCTCAGC | 1 cut(s) | 402 |
| BccI | CCATC | 8 cut(s) | 121, 358, 818, 1208, 1294, 1414, 2585, 2663 |
| BceAI | ACGGC | 3 cut(s) | 1157, 2174, 2875 |
| BciT130I | CCWGG | 2 cut(s) | 156, 2142 |
| BclI | TGATCA | 3 cut(s) | 1084, 1972, 2890 |
| BcnI | CCSGG | 2 cut(s) | 592, 2468 |
| BcoDI | GTCTC | 7 cut(s) | 666, 809, 1020, 1453, 1918, 2769, 3021 |
| BfaI | CTAG | 2 cut(s) | 372, 2997 |
| BfmI | CTRYAG | 3 cut(s) | 1736, 2571, 2925 |
| BfrI | CTTAAG | 1 cut(s) | 776 |
| BfuAI | ACCTGC | 5 cut(s) | 34, 710, 1729, 2401, 2766 |
| BglII | AGATCT | 2 cut(s) | 1560, 2473 |
| BmcAI | AGTACT | 1 cut(s) | 2217 |
| Bme1390I | CCNGG | 4 cut(s) | 156, 592, 2142, 2468 |
| Bme18I | GGWCC | 5 cut(s) | 158, 588, 1480, 2429, 2755 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 535 |
| BmeT110I | CYCGRG | 1 cut(s) | 1450 |
| BmgT120I | GGNCC | 7 cut(s) | 158, 588, 1217, 1480, 2274, 2429, 2755 |
| BmiI | GGNNCC | 2 cut(s) | 160, 2275 |
| BmrFI | CCNGG | 4 cut(s) | 156, 592, 2142, 2468 |
| BmrI | ACTGGG | 1 cut(s) | 1031 |
| BmtI | GCTAGC | 1 cut(s) | 375 |
| BmuI | ACTGGG | 1 cut(s) | 1031 |
| BpiI | GAAGAC | 5 cut(s) | 111, 303, 956, 2473, 2727 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1109, 1141, 2426, 2458 |
| BpmI | CTGGAG | 2 cut(s) | 1820, 2163 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| Bpu14I | TTCGAA | 1 cut(s) | 266 |
| BpuEI | CTTGAG | 5 cut(s) | 41, 920, 1168, 1367, 1883 |
| BpuMI | CCSGG | 2 cut(s) | 592, 2468 |
| BsaAI | YACGTR | 1 cut(s) | 523 |
| BsaI | GGTCTC | 2 cut(s) | 666, 1020 |
| BsaJI | CCNNGG | 6 cut(s) | 88, 1647, 2156, 2250, 2451, 2466 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 585, 657, 1821, 2764 |
| Bse1I | ACTGG | 4 cut(s) | 297, 1026, 1509, 2419 |
| Bse3DI | GCAATG | 4 cut(s) | 645, 1689, 2188, 2605 |
| BseBI | CCWGG | 2 cut(s) | 156, 2142 |
| BseDI | CCNNGG | 6 cut(s) | 88, 1647, 2156, 2250, 2451, 2466 |
| BseGI | GGATG | 7 cut(s) | 599, 1087, 1781, 2854, 2878, 2930, 3035 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 585, 657, 1821, 2764 |
| BseMI | GCAATG | 4 cut(s) | 645, 1689, 2188, 2605 |
| BseMII | CTCAG | 8 cut(s) | 51, 393, 804, 1269, 1667, 1806, 1929, 2115 |
| BseNI | ACTGG | 4 cut(s) | 297, 1026, 1509, 2419 |
| BseRI | GAGGAG | 6 cut(s) | 476, 872, 1541, 1778, 2894, 2897 |
| BseSI | GKGCMC | 1 cut(s) | 2235 |
| BseX3I | CGGCCG | 1 cut(s) | 1139 |
| BsgI | GTGCAG | 1 cut(s) | 1731 |
| Bsh1236I | CGCG | 2 cut(s) | 1144, 2916 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1142 |
| BshFI | GGCC | 8 cut(s) | 93, 482, 796, 1141, 1219, 2276, 2450, 2652 |
| BsiEI | CGRYCG | 1 cut(s) | 1142 |
| BsiHKAI | GWGCWC | 3 cut(s) | 54, 1836, 2235 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1450 |
| BsiSI | CCGG | 2 cut(s) | 591, 2468 |
| BslFI | GGGAC | 3 cut(s) | 144, 607, 650 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 585, 657, 1821, 2764 |
| BsmAI | GTCTC | 7 cut(s) | 666, 809, 1020, 1453, 1918, 2769, 3021 |
| BsmBI | CGTCTC | 1 cut(s) | 2769 |
| BsmFI | GGGAC | 3 cut(s) | 144, 607, 650 |
| BsmI | GAATGC | 1 cut(s) | 713 |
| BsnI | GGCC | 8 cut(s) | 93, 482, 796, 1141, 1219, 2276, 2450, 2652 |
| Bso31I | GGTCTC | 2 cut(s) | 666, 1020 |
| BsoBI | CYCGRG | 1 cut(s) | 1450 |
| Bsp119I | TTCGAA | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 5 cut(s) | 54, 1154, 1836, 2172, 2235 |
| Bsp19I | CCATGG | 1 cut(s) | 2250 |
| BspACI | CCGC | 7 cut(s) | 5, 443, 793, 1142, 1757, 2084, 2916 |
| BspANI | GGCC | 8 cut(s) | 93, 482, 796, 1141, 1219, 2276, 2450, 2652 |
| BspCNI | CTCAG | 8 cut(s) | 50, 394, 805, 1270, 1668, 1805, 1928, 2116 |
| BspFNI | CGCG | 2 cut(s) | 1144, 2916 |
| BspHI | TCATGA | 1 cut(s) | 1975 |
| BspLI | GGNNCC | 2 cut(s) | 160, 2275 |
| BspMAI | CTGCAG | 3 cut(s) | 1740, 2575, 2929 |
| BspMI | ACCTGC | 5 cut(s) | 34, 710, 1729, 2401, 2766 |
| BspOI | GCTAGC | 1 cut(s) | 375 |
| BspPI | GGATC | 2 cut(s) | 2147, 2804 |
| BspT104I | TTCGAA | 1 cut(s) | 266 |
| BspTI | CTTAAG | 1 cut(s) | 776 |
| BspTNI | GGTCTC | 2 cut(s) | 666, 1020 |
| BsrDI | GCAATG | 4 cut(s) | 645, 1689, 2188, 2605 |
| BsrI | ACTGG | 4 cut(s) | 297, 1026, 1509, 2419 |
| BssECI | CCNNGG | 6 cut(s) | 88, 1647, 2156, 2250, 2451, 2466 |
| BssT1I | CCWWGG | 2 cut(s) | 1647, 2250 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 2142 |
| Bst4CI | ACNGT | 4 cut(s) | 1002, 2121, 2215, 2612 |
| Bst6I | CTCTTC | 9 cut(s) | 464, 482, 545, 840, 1787, 2040, 2616, 2871, 3020 |
| BstAFI | CTTAAG | 1 cut(s) | 776 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1052 |
| BstBAI | YACGTR | 1 cut(s) | 523 |
| BstBI | TTCGAA | 1 cut(s) | 266 |
| BstC8I | GCNNGC | 6 cut(s) | 373, 426, 1710, 1944, 2636, 2650 |
| BstDSI | CCRYGG | 2 cut(s) | 2156, 2250 |
| BstF5I | GGATG | 7 cut(s) | 599, 1087, 1781, 2854, 2878, 2930, 3035 |
| BstFNI | CGCG | 2 cut(s) | 1144, 2916 |
| BstHHI | GCGC | 3 cut(s) | 1146, 2163, 2916 |
| BstMAI | GTCTC | 7 cut(s) | 666, 809, 1020, 1453, 1918, 2769, 3021 |
| BstMCI | CGRYCG | 1 cut(s) | 1142 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 1052, 1721, 1735, 2167, 2758 |
| BstNI | CCWGG | 2 cut(s) | 156, 2142 |
| BstNSI | RCATGY | 3 cut(s) | 1773, 2231, 2638 |
| BstSCI | CCNGG | 4 cut(s) | 154, 590, 2140, 2466 |
| BstSFI | CTRYAG | 3 cut(s) | 1736, 2571, 2925 |
| BstSLI | GKGCMC | 1 cut(s) | 2235 |
| BstSNI | TACGTA | 1 cut(s) | 523 |
| BstUI | CGCG | 2 cut(s) | 1144, 2916 |
| BstV2I | GAAGAC | 5 cut(s) | 111, 303, 956, 2473, 2727 |
| BstX2I | RGATCY | 2 cut(s) | 1560, 2473 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2426 |
| BstYI | RGATCY | 2 cut(s) | 1560, 2473 |
| BstZI | CGGCCG | 1 cut(s) | 1139 |
| BsuRI | GGCC | 8 cut(s) | 93, 482, 796, 1141, 1219, 2276, 2450, 2652 |
| BtgI | CCRYGG | 2 cut(s) | 2156, 2250 |
| BtsCI | GGATG | 7 cut(s) | 599, 1087, 1781, 2854, 2878, 2930, 3035 |
| BtsI | GCAGTG | 2 cut(s) | 1110, 1960 |
| BtsIMutI | CAGTG | 6 cut(s) | 290, 1110, 1591, 1960, 2617, 2746 |
| BveI | ACCTGC | 5 cut(s) | 34, 710, 1729, 2401, 2766 |
| Cac8I | GCNNGC | 6 cut(s) | 373, 426, 1710, 1944, 2636, 2650 |
| CciI | TCATGA | 1 cut(s) | 1975 |
| CfoI | GCGC | 3 cut(s) | 1146, 2163, 2916 |
| Cfr13I | GGNCC | 7 cut(s) | 158, 588, 1217, 1480, 2274, 2429, 2755 |
| CseI | GACGC | 2 cut(s) | 1184, 2269 |
| CsiI | ACCWGGT | 1 cut(s) | 154 |
| Csp6I | GTAC | 4 cut(s) | 1268, 1733, 2117, 2216 |
| CviQI | GTAC | 4 cut(s) | 1268, 1733, 2117, 2216 |
| DriI | GACNNNNNGTC | 1 cut(s) | 535 |
| EaeI | YGGCCR | 4 cut(s) | 480, 794, 1139, 2448 |
| EagI | CGGCCG | 1 cut(s) | 1139 |
| Eam1104I | CTCTTC | 9 cut(s) | 464, 482, 545, 840, 1787, 2040, 2616, 2871, 3020 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 535 |
| EarI | CTCTTC | 9 cut(s) | 464, 482, 545, 840, 1787, 2040, 2616, 2871, 3020 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| EclXI | CGGCCG | 1 cut(s) | 1139 |
| Eco105I | TACGTA | 1 cut(s) | 523 |
| Eco130I | CCWWGG | 2 cut(s) | 1647, 2250 |
| Eco24I | GRGCYC | 2 cut(s) | 1154, 2172 |
| Eco31I | GGTCTC | 2 cut(s) | 666, 1020 |
| Eco32I | GATATC | 1 cut(s) | 612 |
| Eco47I | GGWCC | 5 cut(s) | 158, 588, 1480, 2429, 2755 |
| Eco52I | CGGCCG | 1 cut(s) | 1139 |
| Eco57I | CTGAAG | 7 cut(s) | 108, 1724, 1733, 1968, 2040, 2223, 2682 |
| Eco88I | CYCGRG | 1 cut(s) | 1450 |
| EcoRI | GAATTC | 1 cut(s) | 2509 |
| EcoRII | CCWGG | 2 cut(s) | 154, 2140 |
| EcoRV | GATATC | 1 cut(s) | 612 |
| EcoT14I | CCWWGG | 2 cut(s) | 1647, 2250 |
| EcoT22I | ATGCAT | 2 cut(s) | 715, 1771 |
| EcoT38I | GRGCYC | 2 cut(s) | 1154, 2172 |
| ErhI | CCWWGG | 2 cut(s) | 1647, 2250 |
| Esp3I | CGTCTC | 1 cut(s) | 2769 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 770, 802, 2037, 2069 |
| FaqI | GGGAC | 3 cut(s) | 144, 607, 650 |
| FauI | CCCGC | 1 cut(s) | 2909 |
| FbaI | TGATCA | 3 cut(s) | 1084, 1972, 2890 |
| FblI | GTMKAC | 1 cut(s) | 2286 |
| FokI | GGATG | 7 cut(s) | 586, 1074, 1788, 2861, 2885, 2917, 3022 |
| FriOI | GRGCYC | 2 cut(s) | 1154, 2172 |
| FspBI | CTAG | 2 cut(s) | 372, 2997 |
| GlaI | GCGC | 3 cut(s) | 1145, 2162, 2915 |
| GsuI | CTGGAG | 2 cut(s) | 1820, 2163 |
| HaeIII | GGCC | 8 cut(s) | 93, 482, 796, 1141, 1219, 2276, 2450, 2652 |
| HapII | CCGG | 2 cut(s) | 591, 2468 |
| HgaI | GACGC | 2 cut(s) | 1184, 2269 |
| HhaI | GCGC | 3 cut(s) | 1146, 2163, 2916 |
| Hin6I | GCGC | 3 cut(s) | 1144, 2161, 2914 |
| HinP1I | GCGC | 3 cut(s) | 1144, 2161, 2914 |
| HincII | GTYRAC | 2 cut(s) | 1015, 1177 |
| HindII | GTYRAC | 2 cut(s) | 1015, 1177 |
| HindIII | AAGCTT | 2 cut(s) | 773, 2402 |
| HpaI | GTTAAC | 2 cut(s) | 1015, 1177 |
| HpaII | CCGG | 2 cut(s) | 591, 2468 |
| HphI | GGTGA | 6 cut(s) | 460, 697, 1120, 1304, 2615, 2684 |
| Hpy166II | GTNNAC | 9 cut(s) | 152, 1015, 1123, 1177, 1699, 1733, 2233, 2287, 2381 |
| Hpy8I | GTNNAC | 9 cut(s) | 152, 1015, 1123, 1177, 1699, 1733, 2233, 2287, 2381 |
| Hpy99I | CGWCG | 1 cut(s) | 544 |
| HpyAV | CCTTC | 8 cut(s) | 356, 1093, 1216, 1412, 1757, 2021, 2247, 2994 |
| HpyCH4III | ACNGT | 4 cut(s) | 1002, 2121, 2215, 2612 |
| HpyCH4IV | ACGT | 5 cut(s) | 522, 1234, 1527, 2586, 2700 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 1052, 1721, 1735, 2167, 2758 |
| HpySE526I | ACGT | 5 cut(s) | 522, 1234, 1527, 2586, 2700 |
| HspAI | GCGC | 3 cut(s) | 1144, 2161, 2914 |
| Ksp22I | TGATCA | 3 cut(s) | 1084, 1972, 2890 |
| KspAI | GTTAAC | 2 cut(s) | 1015, 1177 |
| LmnI | GCTCC | 5 cut(s) | 196, 982, 1554, 1839, 2206 |
| MabI | ACCWGGT | 1 cut(s) | 154 |
| MaeI | CTAG | 2 cut(s) | 372, 2997 |
| MaeII | ACGT | 5 cut(s) | 522, 1234, 1527, 2586, 2700 |
| MaeIII | GTNAC | 4 cut(s) | 685, 921, 2672, 2816 |
| MflI | RGATCY | 2 cut(s) | 1560, 2473 |
| MhlI | GDGCHC | 5 cut(s) | 54, 1154, 1836, 2172, 2235 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 5 cut(s) | 545, 1118, 1434, 1853, 1994 |
| MmeI | TCCRAC | 1 cut(s) | 1525 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 2 cut(s) | 715, 1771 |
| MroXI | GAANNNNTTC | 3 cut(s) | 744, 1878, 2049 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1774, 1953 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 3 cut(s) | 793, 1631, 1715 |
| MspCI | CTTAAG | 1 cut(s) | 776 |
| MspI | CCGG | 2 cut(s) | 591, 2468 |
| MspR9I | CCNGG | 4 cut(s) | 156, 592, 2142, 2468 |
| Mva1269I | GAATGC | 1 cut(s) | 713 |
| MvaI | CCWGG | 2 cut(s) | 156, 2142 |
| MvnI | CGCG | 2 cut(s) | 1144, 2916 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 1052, 1721, 1735, 2167, 2758 |
| NciI | CCSGG | 2 cut(s) | 592, 2468 |
| NcoI | CCATGG | 1 cut(s) | 2250 |
| NheI | GCTAGC | 1 cut(s) | 371 |
| NlaIV | GGNNCC | 2 cut(s) | 160, 2275 |
| NmeAIII | GCCGAG | 2 cut(s) | 69, 2476 |
| NmuCI | GTSAC | 3 cut(s) | 685, 2672, 2816 |
| NsiI | ATGCAT | 2 cut(s) | 715, 1771 |
| NspI | RCATGY | 3 cut(s) | 1773, 2231, 2638 |
| NspV | TTCGAA | 1 cut(s) | 266 |
| OliI | CACNNNNGTG | 1 cut(s) | 1953 |
| PaeI | GCATGC | 1 cut(s) | 2638 |
| PaeR7I | CTCGAG | 1 cut(s) | 1450 |
| PagI | TCATGA | 1 cut(s) | 1975 |
| PciI | ACATGT | 1 cut(s) | 2227 |
| PctI | GAATGC | 1 cut(s) | 713 |
| PdmI | GAANNNNTTC | 3 cut(s) | 744, 1878, 2049 |
| PfeI | GAWTC | 7 cut(s) | 8, 260, 1394, 1573, 1979, 2642, 2993 |
| PflFI | GACNNNGTC | 1 cut(s) | 1472 |
| PfoI | TCCNGGA | 1 cut(s) | 590 |
| PleI | GAGTC | 5 cut(s) | 544, 1118, 1433, 1852, 1994 |
| PpsI | GAGTC | 5 cut(s) | 544, 1118, 1433, 1852, 1994 |
| Ppu21I | YACGTR | 1 cut(s) | 523 |
| PscI | ACATGT | 1 cut(s) | 2227 |
| Psp1406I | AACGTT | 1 cut(s) | 1234 |
| Psp6I | CCWGG | 2 cut(s) | 154, 2140 |
| PspGI | CCWGG | 2 cut(s) | 154, 2140 |
| PspN4I | GGNNCC | 2 cut(s) | 160, 2275 |
| PspPI | GGNCC | 7 cut(s) | 158, 588, 1217, 1480, 2274, 2429, 2755 |
| PstI | CTGCAG | 3 cut(s) | 1740, 2575, 2929 |
| PsuI | RGATCY | 2 cut(s) | 1560, 2473 |
| PsyI | GACNNNGTC | 1 cut(s) | 1472 |
| PvuII | CAGCTG | 2 cut(s) | 1631, 1715 |
| RsaI | GTAC | 4 cut(s) | 1269, 1734, 2118, 2217 |
| RsaNI | GTAC | 4 cut(s) | 1268, 1733, 2117, 2216 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1774, 1953 |
| Sau96I | GGNCC | 7 cut(s) | 158, 588, 1217, 1480, 2274, 2429, 2755 |
| ScaI | AGTACT | 1 cut(s) | 2217 |
| SchI | GAGTC | 5 cut(s) | 545, 1118, 1434, 1853, 1994 |
| ScrFI | CCNGG | 4 cut(s) | 156, 592, 2142, 2468 |
| SduI | GDGCHC | 5 cut(s) | 54, 1154, 1836, 2172, 2235 |
| SexAI | ACCWGGT | 1 cut(s) | 154 |
| SfcI | CTRYAG | 3 cut(s) | 1736, 2571, 2925 |
| Sfr274I | CTCGAG | 1 cut(s) | 1450 |
| SfuI | TTCGAA | 1 cut(s) | 266 |
| SinI | GGWCC | 5 cut(s) | 158, 588, 1480, 2429, 2755 |
| SlaI | CTCGAG | 1 cut(s) | 1450 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1774, 1953 |
| SmlI | CTYRAG | 7 cut(s) | 56, 776, 899, 1147, 1346, 1450, 1862 |
| SmoI | CTYRAG | 7 cut(s) | 56, 776, 899, 1147, 1346, 1450, 1862 |
| SnaBI | TACGTA | 1 cut(s) | 523 |
| SphI | GCATGC | 1 cut(s) | 2638 |
| SsiI | CCGC | 7 cut(s) | 5, 443, 793, 1142, 1757, 2084, 2916 |
| SspI | AATATT | 1 cut(s) | 2281 |
| SspMI | CTAG | 2 cut(s) | 372, 2997 |
| StyD4I | CCNGG | 4 cut(s) | 154, 590, 2140, 2466 |
| StyI | CCWWGG | 2 cut(s) | 1647, 2250 |
| TaaI | ACNGT | 4 cut(s) | 1002, 2121, 2215, 2612 |
| TaiI | ACGT | 5 cut(s) | 525, 1237, 1530, 2589, 2703 |
| TaqI | TCGA | 7 cut(s) | 266, 542, 1451, 1476, 1554, 1568, 3019 |
| TatI | WGTACW | 2 cut(s) | 1732, 2215 |
| TauI | GCSGC | 3 cut(s) | 796, 1144, 1759 |
| TfiI | GAWTC | 7 cut(s) | 8, 260, 1394, 1573, 1979, 2642, 2993 |
| TscAI | CASTG | 6 cut(s) | 297, 1110, 1591, 1960, 2617, 2746 |
| TseFI | GTSAC | 3 cut(s) | 685, 2672, 2816 |
| Tsp45I | GTSAC | 3 cut(s) | 685, 2672, 2816 |
| TspGWI | ACGGA | 2 cut(s) | 2793, 2923 |
| TspRI | CASTG | 6 cut(s) | 297, 1110, 1591, 1960, 2617, 2746 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1472 |
| Vha464I | CTTAAG | 1 cut(s) | 776 |
| VneI | GTGCAC | 1 cut(s) | 2231 |
| VpaK11BI | GGWCC | 5 cut(s) | 158, 588, 1480, 2429, 2755 |
| XapI | RAATTY | 4 cut(s) | 235, 1519, 2336, 2509 |
| XbaI | TCTAGA | 1 cut(s) | 2996 |
| XceI | RCATGY | 3 cut(s) | 1773, 2231, 2638 |
| XhoI | CTCGAG | 1 cut(s) | 1450 |
| XmiI | GTMKAC | 1 cut(s) | 2286 |
| XmnI | GAANNNNTTC | 3 cut(s) | 744, 1878, 2049 |
| XspI | CTAG | 2 cut(s) | 372, 2997 |
| ZrmI | AGTACT | 1 cut(s) | 2217 |
| Zsp2I | ATGCAT | 2 cut(s) | 715, 1771 |