Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Reverse (-)

28307893 .. 28309610

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGGATTTTAGGGTAAGACATGAGTGTTCATCTCTCCGTGGTACTTTGTTGGATTCAAGATATGCTAAGGCAGTGCAATGCCTTGTAGAAGAAGTTATCGATATAGGTGGTAGAGAGGTTGAGCTTTGCAACAACATTCTAATCAATCAGCTGTTTCCAGGAAGGAGAAGACCCGGTTTTGCTTTGTCTTCCGAAATCAAATCCGAACTTTGCAGTTCTGGTTTCATGTCTTTGCCTGAGAATCATGAGATTCATATCAAAATCACAAAGCTTCTCAGTTTGTTGCAACAGGTAGAAGAAAGATTTGAGCAGTACTGCAATCAACTGGAGCAAGTGATTTCATCATTTGAGGAAATAGCAGGAGAAGGATCATCTAAAGTGTACACCGGTTTAGCTCTCCAAGCCATGACTCGACATTTCGGTAGTCTTGAAGAAGCAATAATCTCTCAGCTAAACTCTGTTCGTCGGAGATTCATCATTTCTCATCAAGATGTTCCCAAGATCATCAGCTCTGGCTTATCACAGCTCAGCTTGTTCGATGGGAACACCACTTCATCATCACTTCAGCGACTTGGTTTGGTTCAAGGACCACAGAGACATGCTTGGAAACCCATCAGAGGCTTGCCTGAGACTTCCGTTGCAATTCTCCGAGCTTGGCTCTTTCAACATTTCTTGCACCCTTATCCGAATGAAGCAGAGAAGCTGGTGTTGGCGTCTCAAACAGGACTTTCGAAGAACCAAGTATCAAATTGGTTTATAAATGCTCGAGTTCGACTCTGGAAACCGATGATAGAAGAGATGTATAGAGAGGAATTTGGAGATTCCTTAGATGAATCAATGCAAAGAGAAGCCAATGATGATTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

290

Amino Acids

33.02

Weight (kDa)

5.82

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	17 - 148	2e-30	Associated with HOX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	3 cut(s)	46, 317, 386
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	5 cut(s)	60, 434, 587, 668, 867
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
Alw26I	GTCTC	3 cut(s)	592, 626, 723
AlwI	GGATC	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	768
ApoI	RAATTY	1 cut(s)	815
AsiGI	ACCGGT	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	768
AvaII	GGWCC	1 cut(s)	590
BbsI	GAAGAC	2 cut(s)	178, 183
BccI	CCATC	2 cut(s)	536, 623
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	592, 626, 723
BlpI	GCTNAGC	1 cut(s)	530
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	162, 177
Bme18I	GGWCC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	162, 177
BpiI	GAAGAC	2 cut(s)	178, 183
BplI	GAGNNNNNCTC	4 cut(s)	645, 677, 762, 794
BpmI	CTGGAG	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	530
Bpu14I	TTCGAA	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	5 cut(s)	231, 292, 464, 544, 621
BseNI	ACTGG	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	768
BsiSI	CCGG	2 cut(s)	177, 390
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	3 cut(s)	592, 626, 723
BsmBI	CGTCTC	1 cut(s)	723
BsoBI	CYCGRG	1 cut(s)	768
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	371, 504
Bsp1720I	GCTNAGC	1 cut(s)	530
BspCNI	CTCAG	5 cut(s)	232, 291, 463, 543, 622
BspDI	ATCGAT	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	247
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	371, 504
BssNI	GRCGYC	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	792
BstACI	GRCGYC	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	7 cut(s)	69, 240, 278, 450, 530, 630, 829
BstDSI	CCRYGG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	374, 507
BstMAI	GTCTC	3 cut(s)	592, 626, 723
BstMBI	GATC	2 cut(s)	371, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	160, 175
BstV2I	GAAGAC	2 cut(s)	178, 183
Bsu15I	ATCGAT	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	626
CciI	TCATGA	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	590
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	3 cut(s)	45, 316, 385
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	5 cut(s)	23, 229, 248, 409, 602
CviQI	GTAC	3 cut(s)	45, 316, 385
DdeI	CTNAG	7 cut(s)	69, 240, 278, 450, 530, 630, 829
DpnI	GATC	2 cut(s)	373, 506
DpnII	GATC	2 cut(s)	371, 504
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco47I	GGWCC	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	768
EcoRII	CCWGG	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	5 cut(s)	26, 232, 251, 412, 605
FatI	CATG	5 cut(s)	22, 228, 247, 408, 601
GsuI	CTGGAG	1 cut(s)	350
HapII	CCGG	2 cut(s)	177, 390
HgaI	GACGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	5 cut(s)	26, 232, 251, 412, 605
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	9 cut(s)	56, 244, 253, 412, 474, 777, 824, 836, 863
HpaII	CCGG	2 cut(s)	177, 390
Hpy166II	GTNNAC	2 cut(s)	385, 387
Hpy188I	TCNGA	6 cut(s)	196, 208, 471, 620, 653, 690
Hpy188III	TCNNGA	5 cut(s)	60, 248, 431, 491, 781
Hpy8I	GTNNAC	2 cut(s)	385, 387
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	159, 362
HpyCH4V	TGCA	8 cut(s)	79, 132, 216, 289, 321, 644, 679, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	7 cut(s)	69, 240, 278, 450, 530, 630, 829
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	5 cut(s)	26, 232, 251, 412, 605
Kzo9I	GATC	2 cut(s)	371, 504
LmnI	GCTCC	1 cut(s)	331
MalI	GATC	2 cut(s)	373, 506
MboI	GATC	2 cut(s)	371, 504
MboII	GAAGA	7 cut(s)	104, 183, 183, 311, 446, 748, 809
MluCI	AATT	3 cut(s)	645, 751, 815
MlyI	GAGTC	2 cut(s)	406, 771
MmeI	TCCRAC	2 cut(s)	33, 449
MnlI	CCTC	4 cut(s)	112, 346, 614, 805
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	177, 390
MspR9I	CCNGG	2 cut(s)	162, 177
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	404
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	371, 504
NlaIII	CATG	5 cut(s)	26, 232, 251, 412, 605
NspI	RCATGY	1 cut(s)	605
NspV	TTCGAA	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	768
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	7 cut(s)	56, 244, 253, 474, 824, 836, 863
PfoI	TCCNGGA	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	389
PleI	GAGTC	2 cut(s)	406, 771
PpsI	GAGTC	2 cut(s)	406, 771
PsiI	TTATAA	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	590
PspXI	VCTCGAGB	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	3 cut(s)	46, 317, 386
RsaNI	GTAC	3 cut(s)	45, 316, 385
RseI	CAYNNNNRTG	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	371, 504
Sau96I	GGNCC	1 cut(s)	590
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	2 cut(s)	406, 771
ScrFI	CCNGG	2 cut(s)	162, 177
Sfr274I	CTCGAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
Sse9I	AATT	3 cut(s)	645, 751, 815
StyD4I	CCNGG	2 cut(s)	160, 175
TaqI	TCGA	6 cut(s)	102, 415, 540, 734, 769, 775
TasI	AATT	3 cut(s)	645, 751, 815
TatI	WGTACW	2 cut(s)	315, 384
TfiI	GAWTC	7 cut(s)	56, 244, 253, 474, 824, 836, 863
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	8 cut(s)	21, 217, 245, 333, 466, 546, 708, 849
TspGWI	ACGGA	2 cut(s)	29, 628
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	1 cut(s)	605
XhoI	CTCGAG	1 cut(s)	768
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.