Rw6G036450

BEL1-like homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002935
Physical Location & Seq
Reverse (-)
60910740 .. 60913247
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036450.1

Sequence Viewer

Length: 1074 bp
ATGGTTTCACAAGACTCACCCCCAAACCAAGCCTCAAGTATTCTCCACCATTTCATTGTGTCTGACTCTATGGCAGCTCAAAACCACATGGAAAACCAACACCAGCTTGATGCTGCTTACGCCTCTAATTTTCGAACCAGCACTAGCACATACCCTCAGTCTCTTGGTCAACTCCCCAGCATTCATTCTCTTGAGGAGAGAATGTCTAGATCACTAGACCTTCTTCATGCTCCTCCAACAGTTGCGGCAGAGGGATCGGATCATATGAGCCACACAAGGCTTCTAATGGACCAGCACCAAGCACTCTCACTGTCCCTTGGCTCACAGATGCTTCTTCCTCCTAATTCTCATTCTGCTCATTATGTGACCGATGACTATTCGTTCATGGGGAATGCGCTTGCTTCGTCCTCAAGCTCGCTGAATCAGCAGTCTTTGGCAGCAGTCATTGGGAATTCAAGATATCTAAAGCCAGCTCAGTCACTGTTAGAAGAGATAGTTAGTGTTGGTGGAAAGGCAGTTGATATCAGCAGTGAAAAACATTTTGGGAAGATATATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGTTGCAATGGCCTCATCTCAGCTGACAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTGGGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTCCAGGCACTTTGGCAGCTTAAGGGATGCTATAATGTCACATATATATGCAGAAAAGCGAAAGTTGATGCAAGATTTTCCGAAAGTGAGCGGCGGACTAGCGCAACTCAGCTTGTTTGATCGAGAGTGTAGACAGAAGAGAATGTCCCTTCAACAGCTTGGGATTATCCATGGCCAAAGGCAAGCAGCTTGGAGACCAATTAGAGGGCTGCCTGAGACCTCGGTGGCAATTCTCCGCACTTGGCTTTTCGAACACTTTCTTCATCCGTAA

Protein Analysis

357

Amino Acids

39.47

Weight (kDa)

6.67

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 148 - 280 2.8e-38 Associated with HOX
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 721
AccBSI CCGCTC 1 cut(s) 894
AccI GTMKAC 1 cut(s) 934
AciI CCGC 4 cut(s) 245, 894, 897, 1039
AclWI GGATC 2 cut(s) 262, 267
AcoI YGGCCR 1 cut(s) 976
AcsI RAATTY 2 cut(s) 451, 644
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 3 cut(s) 721, 807, 1007
AflII CTTAAG 1 cut(s) 823
AgsI TTSAA 4 cut(s) 456, 598, 650, 956
AjnI CCWGG 1 cut(s) 806
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
Alw26I GTCTC 3 cut(s) 165, 991, 1013
AlwI GGATC 2 cut(s) 262, 267
AlwNI CAGNNNCTG 1 cut(s) 481
AoxI GGCC 4 cut(s) 580, 619, 798, 976
ApeKI GCWGC 7 cut(s) 74, 113, 437, 767, 819, 989, 1012
ApoI RAATTY 2 cut(s) 451, 644
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 2 cut(s) 397, 907
AspS9I GGNCC 2 cut(s) 289, 580
AsuHPI GGTGA 2 cut(s) 9, 664
AsuII TTCGAA 2 cut(s) 133, 1053
AvaII GGWCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 978
BbvI GCAGC 7 cut(s) 86, 100, 449, 779, 831, 999, 1001
BccI CCATC 2 cut(s) 723, 742
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 808
BcoDI GTCTC 3 cut(s) 165, 991, 1013
BfaI CTAG 4 cut(s) 144, 207, 215, 902
BfrI CTTAAG 1 cut(s) 823
BisI GCNGC 9 cut(s) 75, 114, 246, 438, 768, 820, 895, 990, 1013
BlsI GCNGC 9 cut(s) 76, 115, 247, 439, 769, 821, 896, 991, 1014
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 1 cut(s) 808
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 289, 580
BmrFI CCNGG 1 cut(s) 808
BmsI GCATC 4 cut(s) 100, 318, 820, 861
Bpu14I TTCGAA 2 cut(s) 133, 1053
BpuEI CTTGAG 4 cut(s) 19, 212, 394, 779
BsaI GGTCTC 2 cut(s) 991, 1013
BsaJI CCNNGG 3 cut(s) 316, 973, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 721, 807, 1007
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 808
BseDI CCNNGG 3 cut(s) 316, 973, 1023
BseGI GGATG 2 cut(s) 835, 1066
BseLI CCNNNNNNNGG 3 cut(s) 721, 807, 1007
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 5 cut(s) 170, 488, 642, 925, 1008
BseRI GAGGAG 2 cut(s) 209, 222
BseXI GCAGC 7 cut(s) 86, 100, 449, 779, 831, 999, 1001
BseYI CCCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 4 cut(s) 582, 621, 800, 978
BslFI GGGAC 2 cut(s) 298, 934
BslI CCNNNNNNNGG 3 cut(s) 721, 807, 1007
BsmAI GTCTC 3 cut(s) 165, 991, 1013
BsmFI GGGAC 2 cut(s) 298, 934
BsmI GAATGC 2 cut(s) 180, 397
BsnI GGCC 4 cut(s) 582, 621, 800, 978
Bso31I GGTCTC 2 cut(s) 991, 1013
Bsp119I TTCGAA 2 cut(s) 133, 1053
Bsp143I GATC 4 cut(s) 209, 254, 259, 922
Bsp19I CCATGG 1 cut(s) 973
BspACI CCGC 4 cut(s) 245, 894, 897, 1039
BspANI GGCC 4 cut(s) 582, 621, 800, 978
BspCNI CTCAG 5 cut(s) 169, 487, 641, 924, 1009
BspPI GGATC 2 cut(s) 262, 267
BspT104I TTCGAA 2 cut(s) 133, 1053
BspTI CTTAAG 1 cut(s) 823
BspTNI GGTCTC 2 cut(s) 991, 1013
BsrBI CCGCTC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 622
BssECI CCNNGG 3 cut(s) 316, 973, 1023
BssMI GATC 4 cut(s) 209, 254, 259, 922
BssT1I CCWWGG 2 cut(s) 316, 973
Bst2UI CCWGG 1 cut(s) 808
Bst4CI ACNGT 3 cut(s) 241, 312, 483
Bst6I CTCTTC 3 cut(s) 483, 678, 935
BstAFI CTTAAG 1 cut(s) 823
BstBI TTCGAA 2 cut(s) 133, 1053
BstC8I GCNNGC 4 cut(s) 399, 416, 471, 987
BstDEI CTNAG 5 cut(s) 156, 474, 628, 911, 1017
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 2 cut(s) 835, 1066
BstHHI GCGC 2 cut(s) 397, 907
BstKTI GATC 4 cut(s) 212, 257, 262, 925
BstMAI GTCTC 3 cut(s) 165, 991, 1013
BstMBI GATC 4 cut(s) 209, 254, 259, 922
BstMWI GCNNNNNNNGC 5 cut(s) 119, 424, 579, 767, 797
BstNI CCWGG 1 cut(s) 808
BstSCI CCNGG 1 cut(s) 806
BstV1I GCAGC 7 cut(s) 86, 100, 449, 779, 831, 999, 1001
BsuRI GGCC 4 cut(s) 582, 621, 800, 978
BtgI CCRYGG 1 cut(s) 973
BtsCI GGATG 2 cut(s) 835, 1066
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 3 cut(s) 308, 479, 535
Cac8I GCNNGC 4 cut(s) 399, 416, 471, 987
CaiI CAGNNNCTG 1 cut(s) 481
CfoI GCGC 2 cut(s) 397, 907
Cfr13I GGNCC 2 cut(s) 289, 580
Csp6I GTAC 1 cut(s) 709
CviAII CATG 6 cut(s) 88, 227, 385, 641, 802, 974
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 5 cut(s) 156, 474, 628, 911, 1017
DpnI GATC 4 cut(s) 211, 256, 261, 924
DpnII GATC 4 cut(s) 209, 254, 259, 922
EaeI YGGCCR 1 cut(s) 976
Eam1104I CTCTTC 3 cut(s) 483, 678, 935
EarI CTCTTC 3 cut(s) 483, 678, 935
EciI GGCGGA 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 316, 973
Eco31I GGTCTC 2 cut(s) 991, 1013
Eco32I GATATC 2 cut(s) 461, 523
Eco47I GGWCC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 806
EcoRV GATATC 2 cut(s) 461, 523
EcoT14I CCWWGG 2 cut(s) 316, 973
ErhI CCWWGG 2 cut(s) 316, 973
FaeI CATG 6 cut(s) 91, 230, 388, 644, 805, 977
FaqI GGGAC 2 cut(s) 298, 934
FatI CATG 6 cut(s) 87, 226, 384, 640, 801, 973
FauNDI CATATG 1 cut(s) 264
FblI GTMKAC 1 cut(s) 934
Fnu4HI GCNGC 9 cut(s) 75, 114, 246, 438, 768, 820, 895, 990, 1013
FokI GGATG 2 cut(s) 842, 1053
Fsp4HI GCNGC 9 cut(s) 75, 114, 246, 438, 768, 820, 895, 990, 1013
FspBI CTAG 4 cut(s) 144, 207, 215, 902
GlaI GCGC 2 cut(s) 396, 906
GluI GCNGC 9 cut(s) 75, 114, 246, 438, 768, 820, 895, 990, 1013
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 4 cut(s) 582, 621, 800, 978
HhaI GCGC 2 cut(s) 397, 907
Hin1II CATG 6 cut(s) 91, 230, 388, 644, 805, 977
Hin6I GCGC 2 cut(s) 395, 905
HinP1I GCGC 2 cut(s) 395, 905
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HinfI GANTC 3 cut(s) 14, 65, 421
HphI GGTGA 2 cut(s) 9, 664
Hpy166II GTNNAC 2 cut(s) 170, 935
Hpy188I TCNGA 4 cut(s) 64, 259, 592, 885
Hpy188III TCNNGA 4 cut(s) 191, 207, 456, 926
Hpy8I GTNNAC 2 cut(s) 170, 935
HpyAV CCTTC 2 cut(s) 230, 962
HpyCH4III ACNGT 3 cut(s) 241, 312, 483
HpyCH4V TGCA 4 cut(s) 615, 761, 854, 874
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 424, 579, 767, 797
HpyF3I CTNAG 5 cut(s) 156, 474, 628, 911, 1017
Hsp92II CATG 6 cut(s) 91, 230, 388, 644, 805, 977
HspAI GCGC 2 cut(s) 395, 905
Kzo9I GATC 4 cut(s) 209, 254, 259, 922
LmnI GCTCC 2 cut(s) 235, 764
Lsp1109I GCAGC 7 cut(s) 86, 100, 449, 779, 831, 999, 1001
LweI GCATC 4 cut(s) 100, 318, 820, 861
MaeI CTAG 4 cut(s) 144, 207, 215, 902
MaeIII GTNAC 3 cut(s) 364, 477, 840
MalI GATC 4 cut(s) 211, 256, 261, 924
MbiI CCGCTC 1 cut(s) 894
MboI GATC 4 cut(s) 209, 254, 259, 922
MboII GAAGA 9 cut(s) 215, 326, 500, 559, 579, 695, 737, 952, 1055
MlsI TGGCCA 1 cut(s) 978
MluCI AATT 7 cut(s) 127, 343, 451, 593, 644, 1002, 1032
MluNI TGGCCA 1 cut(s) 978
MlyI GAGTC 2 cut(s) 8, 59
MmeI TCCRAC 1 cut(s) 260
Mox20I TGGCCA 1 cut(s) 978
MroXI GAANNNNTTC 1 cut(s) 1059
MscI TGGCCA 1 cut(s) 978
MseI TTAA 1 cut(s) 824
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 978
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 823
MspR9I CCNGG 1 cut(s) 808
Mva1269I GAATGC 2 cut(s) 180, 397
MvaI CCWGG 1 cut(s) 808
MwoI GCNNNNNNNGC 5 cut(s) 119, 424, 579, 767, 797
NcoI CCATGG 1 cut(s) 973
NdeI CATATG 1 cut(s) 264
NdeII GATC 4 cut(s) 209, 254, 259, 922
NlaIII CATG 6 cut(s) 91, 230, 388, 644, 805, 977
NmuCI GTSAC 3 cut(s) 364, 477, 840
NspV TTCGAA 2 cut(s) 133, 1053
PctI GAATGC 2 cut(s) 180, 397
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 1 cut(s) 421
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 9 cut(s) 76, 115, 247, 439, 769, 821, 896, 991, 1014
PleI GAGTC 2 cut(s) 8, 59
PpsI GAGTC 2 cut(s) 8, 59
Psp6I CCWGG 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 806
PspPI GGNCC 2 cut(s) 289, 580
PstNI CAGNNNCTG 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 1 cut(s) 849
SaqAI TTAA 1 cut(s) 824
SatI GCNGC 9 cut(s) 75, 114, 246, 438, 768, 820, 895, 990, 1013
Sau3AI GATC 4 cut(s) 209, 254, 259, 922
Sau96I GGNCC 2 cut(s) 289, 580
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 2 cut(s) 8, 59
ScrFI CCNGG 1 cut(s) 808
SfaNI GCATC 4 cut(s) 100, 318, 820, 861
SfuI TTCGAA 2 cut(s) 133, 1053
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 5 cut(s) 34, 191, 409, 794, 823
SmoI CTYRAG 5 cut(s) 34, 191, 409, 794, 823
Sse9I AATT 7 cut(s) 127, 343, 451, 593, 644, 1002, 1032
SsiI CCGC 4 cut(s) 245, 894, 897, 1039
SspMI CTAG 4 cut(s) 144, 207, 215, 902
StyD4I CCNGG 1 cut(s) 806
StyI CCWWGG 2 cut(s) 316, 973
TaaI ACNGT 3 cut(s) 241, 312, 483
TaqI TCGA 4 cut(s) 133, 653, 925, 1053
TaqII GACCGA 1 cut(s) 383
TasI AATT 7 cut(s) 127, 343, 451, 593, 644, 1002, 1032
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 248, 897
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 824
Tru9I TTAA 1 cut(s) 824
TscAI CASTG 3 cut(s) 315, 486, 535
TseFI GTSAC 3 cut(s) 364, 477, 840
TseI GCWGC 7 cut(s) 74, 113, 437, 767, 819, 989, 1012
Tsp45I GTSAC 3 cut(s) 364, 477, 840
TspDTI ATGAA 6 cut(s) 43, 173, 215, 373, 657, 1055
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 3 cut(s) 315, 486, 535
Van91I CCANNNNNTGG 1 cut(s) 721
Vha464I CTTAAG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 2 cut(s) 451, 644
XbaI TCTAGA 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 934
XmnI GAANNNNTTC 1 cut(s) 1059
XspI CTAG 4 cut(s) 144, 207, 215, 902
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.