Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Forward (+)

74817312 .. 74818744

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTTTCACAAGACTCACCCCCAAACCAAGCCTCAAGTATTCTCCACCAATTCATTATCTCAGACTGCATGGCAGCTCAAAACCACATGGAAAACCAACACCAGTTTGATGCTGCTTACGCCCCTAATTTTCAAACCAGCACTAGCACATACCCTCAGTCTCTTGACCTACTTCATGCTCCTCCAACAGTTGCGGCAGAGGGATCGGATCATATGAGCCACACAAGGCTTCTAATGGACCAGCACCAAGCTCTCTCACTGTCCCTTGGCTCGCAGATGCTTCTTCATCCTAATTCTCATTCTGCTCATTATGTGACCCATGACTATTCGTTCATGGGGAATGCACTTGCTTCGTCTTCAAGCTACTCAGTCACTGTTAAAAGAGATAGTGTTGGTGGAAAGGCAGTTGATATCAGCAGTGAAAAACATGTTGGAAAGATGTATGGTGGAGGTAGGAGAGGTTCAATGGGCCTTTCTTCTGAACTGAAAGCAGGGTTGTGCTGCAATGGTCTCTTGTCAGCTGACAGACATGAATATCAAGCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAAATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCGTTTGAGATGGTAGTGGGTGCAGGAGCAGCAAAGTCTTACAAAGCTCTGGCTCTGAAGGCCATGTCCAGGCACTTTAGCAGCTTAAGGGATGCTATAATGTCACACATATATGTAGAAAAGCGAAAGTTGATGCAAGATTTTCCGAAAGTGGGCAGCGGACTAGTGCAGCTCAGCTTGTTTGATCGAGAGTGTAGACTGAAGCTAGAGACTGTCGCTTCAACAGCTTGGGATTATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

290

Amino Acids

31.86

Weight (kDa)

6.33

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	155 - 243	6.4e-29	Associated with HOX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	823
AciI	CCGC	2 cut(s)	194, 786
AclWI	GGATC	2 cut(s)	211, 216
AcuI	CTGAAG	2 cut(s)	704, 848
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	610, 696, 779
AflII	CTTAAG	1 cut(s)	712
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	134, 360, 465, 849
AhlI	ACTAGT	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
Alw26I	GTCTC	3 cut(s)	165, 515, 830
AlwI	GGATC	2 cut(s)	211, 216
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	469, 687
ApeKI	GCWGC	7 cut(s)	74, 113, 501, 656, 708, 783, 796
AspS9I	GGNCC	2 cut(s)	238, 469
AsuHPI	GGTGA	2 cut(s)	9, 553
AvaII	GGWCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	7 cut(s)	86, 100, 488, 668, 720, 795, 808
BccI	CCATC	2 cut(s)	612, 631
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 333, 367
BciT130I	CCWGG	1 cut(s)	697
BcoDI	GTCTC	3 cut(s)	165, 515, 830
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	3 cut(s)	144, 791, 833
BfrI	CTTAAG	1 cut(s)	712
BisI	GCNGC	8 cut(s)	75, 114, 195, 502, 657, 709, 784, 797
BlpI	GCTNAGC	1 cut(s)	800
BlsI	GCNGC	8 cut(s)	76, 115, 196, 503, 658, 710, 785, 798
BmcAI	AGTACT	1 cut(s)	599
Bme1390I	CCNGG	1 cut(s)	697
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	238, 469
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	4 cut(s)	100, 267, 709, 750
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	800
BpuEI	CTTGAG	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	3 cut(s)	610, 696, 779
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	286, 724
BseLI	CCNNNNNNNGG	3 cut(s)	610, 696, 779
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	4 cut(s)	75, 170, 381, 814
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	7 cut(s)	86, 100, 488, 668, 720, 795, 808
BsgI	GTGCAG	2 cut(s)	669, 815
BshFI	GGCC	2 cut(s)	471, 689
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	610, 696, 779
BsmAI	GTCTC	3 cut(s)	165, 515, 830
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	471, 689
Bso31I	GGTCTC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	203, 208, 811
Bsp1720I	GCTNAGC	1 cut(s)	800
BspACI	CCGC	2 cut(s)	194, 786
BspANI	GGCC	2 cut(s)	471, 689
BspCNI	CTCAG	4 cut(s)	74, 169, 380, 813
BspPI	GGATC	2 cut(s)	211, 216
BspTI	CTTAAG	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	203, 208, 811
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	4 cut(s)	190, 261, 376, 841
Bst6I	CTCTTC	1 cut(s)	567
BstAFI	CTTAAG	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	4 cut(s)	61, 156, 367, 800
BstF5I	GGATG	2 cut(s)	286, 724
BstKTI	GATC	3 cut(s)	206, 211, 814
BstMAI	GTCTC	3 cut(s)	165, 515, 830
BstMBI	GATC	3 cut(s)	203, 208, 811
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 548, 656, 686, 851
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	695
BstV1I	GCAGC	7 cut(s)	86, 100, 488, 668, 720, 795, 808
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	471, 689
BtsCI	GGATG	2 cut(s)	286, 724
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	257, 372, 424
Cac8I	GCNNGC	1 cut(s)	272
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	238, 469
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	8 cut(s)	70, 88, 176, 320, 334, 428, 530, 691
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	4 cut(s)	61, 156, 367, 800
DpnI	GATC	3 cut(s)	205, 210, 813
DpnII	GATC	3 cut(s)	203, 208, 811
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	704, 848
EcoRII	CCWGG	1 cut(s)	695
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	8 cut(s)	73, 91, 179, 323, 337, 431, 533, 694
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	8 cut(s)	69, 87, 175, 319, 333, 427, 529, 690
FauNDI	CATATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	8 cut(s)	75, 114, 195, 502, 657, 709, 784, 797
FokI	GGATG	2 cut(s)	273, 731
Fsp4HI	GCNGC	8 cut(s)	75, 114, 195, 502, 657, 709, 784, 797
FspBI	CTAG	3 cut(s)	144, 791, 833
GluI	GCNGC	8 cut(s)	75, 114, 195, 502, 657, 709, 784, 797
HaeIII	GGCC	2 cut(s)	471, 689
Hin1II	CATG	8 cut(s)	73, 91, 179, 323, 337, 431, 533, 694
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	2 cut(s)	9, 553
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188I	TCNGA	5 cut(s)	64, 208, 481, 684, 774
Hpy188III	TCNNGA	2 cut(s)	164, 815
Hpy8I	GTNNAC	1 cut(s)	824
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	4 cut(s)	190, 261, 376, 841
HpyCH4V	TGCA	6 cut(s)	69, 344, 504, 650, 763, 796
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 548, 656, 686, 851
HpyF3I	CTNAG	4 cut(s)	61, 156, 367, 800
Hsp92II	CATG	8 cut(s)	73, 91, 179, 323, 337, 431, 533, 694
Kzo9I	GATC	3 cut(s)	203, 208, 811
LmnI	GCTCC	2 cut(s)	184, 653
LpnPI	CCDG	9 cut(s)	116, 151, 254, 477, 554, 636, 662, 682, 709
Lsp1109I	GCAGC	7 cut(s)	86, 100, 488, 668, 720, 795, 808
LweI	GCATC	4 cut(s)	100, 267, 709, 750
MaeI	CTAG	3 cut(s)	144, 791, 833
MaeIII	GTNAC	3 cut(s)	313, 370, 729
MalI	GATC	3 cut(s)	205, 210, 813
MboI	GATC	3 cut(s)	203, 208, 811
MboII	GAAGA	5 cut(s)	275, 348, 468, 584, 626
MluCI	AATT	3 cut(s)	50, 127, 292
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	209, 412
MnlI	CCTC	9 cut(s)	43, 165, 192, 193, 443, 452, 566, 568, 574
MseI	TTAA	2 cut(s)	378, 713
MslI	CAYNNNNRTG	1 cut(s)	738
MspA1I	CMGCKG	2 cut(s)	521, 786
MspCI	CTTAAG	1 cut(s)	712
MspR9I	CCNGG	1 cut(s)	697
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	5 cut(s)	119, 548, 656, 686, 851
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	3 cut(s)	203, 208, 811
NlaIII	CATG	8 cut(s)	73, 91, 179, 323, 337, 431, 533, 694
NmuCI	GTSAC	3 cut(s)	313, 370, 729
NspI	RCATGY	1 cut(s)	431
PciI	ACATGT	1 cut(s)	427
PctI	GAATGC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	8 cut(s)	76, 115, 196, 503, 658, 710, 785, 798
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspPI	GGNCC	2 cut(s)	238, 469
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	738
SaqAI	TTAA	2 cut(s)	378, 713
SatI	GCNGC	8 cut(s)	75, 114, 195, 502, 657, 709, 784, 797
Sau3AI	GATC	3 cut(s)	203, 208, 811
Sau96I	GGNCC	2 cut(s)	238, 469
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	697
SfaNI	GCATC	4 cut(s)	100, 267, 709, 750
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	34, 712
SmoI	CTYRAG	2 cut(s)	34, 712
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	3 cut(s)	50, 127, 292
SsiI	CCGC	2 cut(s)	194, 786
SspMI	CTAG	3 cut(s)	144, 791, 833
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	4 cut(s)	190, 261, 376, 841
TaqI	TCGA	1 cut(s)	814
TasI	AATT	3 cut(s)	50, 127, 292
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	378, 713
Tru9I	TTAA	2 cut(s)	378, 713
TscAI	CASTG	3 cut(s)	264, 379, 424
TseFI	GTSAC	3 cut(s)	313, 370, 729
TseI	GCWGC	7 cut(s)	74, 113, 501, 656, 708, 783, 796
Tsp45I	GTSAC	3 cut(s)	313, 370, 729
TspDTI	ATGAA	5 cut(s)	43, 164, 275, 322, 546
TspRI	CASTG	3 cut(s)	264, 379, 424
Van91I	CCANNNNNTGG	1 cut(s)	610
Vha464I	CTTAAG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	238
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	3 cut(s)	144, 791, 833
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.