Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Forward (+)

65945231 .. 65946145

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCTAGATCACTAGACCTTCTTCATGCTCCTCCAATGGCCGCGGCAGAGGGATCAGATCATATGAGCCACACAAGGGTTCTAATGGACCAGCACCAAGCACTCTCACTGTCCCTTGGCTCACAGATGCTTCTTCTTCCTAGTTCTCATTCTGCTCATTATCAGTCTTTGGCAGCAGTCATTGGGAATTCGAGATATCTAAAGCCAGCTCAGTCACTATTAGAAGAGATAGTTAGTGTTGGTGGAAAGGCAGTGGATATCAGCAGTGAAAAACATGTTGGGAAAATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTAATGTCAGCTGATAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTGGGTGCAGGAGCAGCAAAGTCTTACACAGCTTTGGCTCTCAAGGCCATGTCCAGGCACTTTGGCAGCTTAAGGGATGCAATAATGTCATATATATCCAGAAAAGCGAAAGTTGATGCAAGATTTTCCGAAAGTGAGACATTGTTAGACAGAAGAGAATGTCCCTTCAACAGCTTGGGATTATCCATGGCCAAAGGCAAGCAGCTTGGAGACCAATTAGAGGGCTGCCTGAGAACTTGGCTTTTCGAACACTTTCTTCATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

251

Amino Acids

27.62

Weight (kDa)

6.63

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	60 - 192	2.1e-39	Associated with HOX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccII	CGCG	1 cut(s)	44
AciI	CCGC	2 cut(s)	42, 44
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	2 cut(s)	39, 678
AcsI	RAATTY	2 cut(s)	187, 380
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	76, 457, 543, 709
AflII	CTTAAG	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	334, 386, 658
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	6 cut(s)	209, 368, 521, 558, 663, 694
AluI	AGCT	6 cut(s)	209, 368, 521, 558, 663, 694
Alw26I	GTCTC	2 cut(s)	620, 693
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	5 cut(s)	39, 316, 355, 534, 678
ApeKI	GCWGC	6 cut(s)	173, 348, 503, 555, 691, 714
ApoI	RAATTY	2 cut(s)	187, 380
Asp700I	GAANNNNTTC	1 cut(s)	741
AspS9I	GGNCC	2 cut(s)	88, 316
AsuHPI	GGTGA	1 cut(s)	400
AsuII	TTCGAA	1 cut(s)	735
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	680
BbvI	GCAGC	6 cut(s)	185, 335, 515, 567, 701, 703
BccI	CCATC	2 cut(s)	459, 478
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	620, 693
BfaI	CTAG	3 cut(s)	6, 14, 141
BfrI	CTTAAG	1 cut(s)	559
BisI	GCNGC	8 cut(s)	42, 45, 174, 349, 504, 556, 692, 715
BlsI	GCNGC	8 cut(s)	43, 46, 175, 350, 505, 557, 693, 716
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	88, 316
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	3 cut(s)	117, 556, 595
Bpu14I	TTCGAA	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	42, 115, 675
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 457, 543, 709
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	3 cut(s)	42, 115, 675
BseGI	GGATG	2 cut(s)	571, 748
BseLI	CCNNNNNNNGG	4 cut(s)	76, 457, 543, 709
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	224, 710
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	6 cut(s)	185, 335, 515, 567, 701, 703
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	5 cut(s)	41, 318, 357, 536, 680
BslFI	GGGAC	2 cut(s)	97, 636
BslI	CCNNNNNNNGG	4 cut(s)	76, 457, 543, 709
BsmAI	GTCTC	2 cut(s)	620, 693
BsmFI	GGGAC	2 cut(s)	97, 636
BsnI	GGCC	5 cut(s)	41, 318, 357, 536, 680
Bso31I	GGTCTC	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	8, 53, 58
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	2 cut(s)	42, 44
BspANI	GGCC	5 cut(s)	41, 318, 357, 536, 680
BspCNI	CTCAG	2 cut(s)	223, 711
BspFNI	CGCG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	42, 115, 675
BssMI	GATC	3 cut(s)	8, 53, 58
BssT1I	CCWWGG	2 cut(s)	115, 675
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	3 cut(s)	219, 414, 637
BstAFI	CTTAAG	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	735
BstC8I	GCNNGC	2 cut(s)	207, 689
BstDEI	CTNAG	2 cut(s)	210, 719
BstDSI	CCRYGG	2 cut(s)	42, 675
BstF5I	GGATG	2 cut(s)	571, 748
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	3 cut(s)	11, 56, 61
BstMAI	GTCTC	2 cut(s)	620, 693
BstMBI	GATC	3 cut(s)	8, 53, 58
BstMWI	GCNNNNNNNGC	4 cut(s)	315, 354, 503, 533
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	6 cut(s)	185, 335, 515, 567, 701, 703
BsuRI	GGCC	5 cut(s)	41, 318, 357, 536, 680
BtgI	CCRYGG	2 cut(s)	42, 675
BtsCI	GGATG	2 cut(s)	571, 748
BtsI	GCAGTG	2 cut(s)	258, 271
BtsIMutI	CAGTG	3 cut(s)	107, 258, 271
Cac8I	GCNNGC	2 cut(s)	207, 689
Cfr13I	GGNCC	2 cut(s)	88, 316
Cfr42I	CCGCGG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	5 cut(s)	26, 275, 377, 538, 676
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	210, 719
DpnI	GATC	3 cut(s)	10, 55, 60
DpnII	GATC	3 cut(s)	8, 53, 58
EaeI	YGGCCR	2 cut(s)	39, 678
Eam1104I	CTCTTC	3 cut(s)	219, 414, 637
EarI	CTCTTC	3 cut(s)	219, 414, 637
Eco130I	CCWWGG	2 cut(s)	115, 675
Eco31I	GGTCTC	1 cut(s)	693
Eco32I	GATATC	2 cut(s)	197, 259
Eco47I	GGWCC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	542
EcoRV	GATATC	2 cut(s)	197, 259
EcoT14I	CCWWGG	2 cut(s)	115, 675
ErhI	CCWWGG	2 cut(s)	115, 675
FaeI	CATG	5 cut(s)	29, 278, 380, 541, 679
FaqI	GGGAC	2 cut(s)	97, 636
FatI	CATG	5 cut(s)	25, 274, 376, 537, 675
FauNDI	CATATG	1 cut(s)	63
Fnu4HI	GCNGC	8 cut(s)	42, 45, 174, 349, 504, 556, 692, 715
FokI	GGATG	2 cut(s)	578, 735
Fsp4HI	GCNGC	8 cut(s)	42, 45, 174, 349, 504, 556, 692, 715
FspBI	CTAG	3 cut(s)	6, 14, 141
GluI	GCNGC	8 cut(s)	42, 45, 174, 349, 504, 556, 692, 715
HaeIII	GGCC	5 cut(s)	41, 318, 357, 536, 680
Hin1II	CATG	5 cut(s)	29, 278, 380, 541, 679
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	3 cut(s)	58, 328, 619
Hpy188III	TCNNGA	3 cut(s)	6, 192, 588
HpyAV	CCTTC	2 cut(s)	29, 664
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	351, 497, 569, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	315, 354, 503, 533
HpyF3I	CTNAG	2 cut(s)	210, 719
Hsp92II	CATG	5 cut(s)	29, 278, 380, 541, 679
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	8, 53, 58
LmnI	GCTCC	2 cut(s)	34, 500
LpnPI	CCDG	8 cut(s)	104, 219, 401, 483, 529, 556, 601, 731
Lsp1109I	GCAGC	6 cut(s)	185, 335, 515, 567, 701, 703
LweI	GCATC	3 cut(s)	117, 556, 595
MaeI	CTAG	3 cut(s)	6, 14, 141
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	3 cut(s)	10, 55, 60
MboI	GATC	3 cut(s)	8, 53, 58
MboII	GAAGA	9 cut(s)	14, 125, 128, 236, 315, 431, 473, 654, 737
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	4 cut(s)	187, 329, 380, 704
MluNI	TGGCCA	1 cut(s)	680
MnlI	CCTC	8 cut(s)	42, 43, 290, 299, 413, 415, 421, 703
Mox20I	TGGCCA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	44, 368
MspCI	CTTAAG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	315, 354, 503, 533
NcoI	CCATGG	1 cut(s)	675
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	3 cut(s)	8, 53, 58
NlaIII	CATG	5 cut(s)	29, 278, 380, 541, 679
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	735
PciI	ACATGT	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	741
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	8 cut(s)	43, 46, 175, 350, 505, 557, 693, 716
PscI	ACATGT	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspPI	GGNCC	2 cut(s)	88, 316
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SacII	CCGCGG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	8 cut(s)	42, 45, 174, 349, 504, 556, 692, 715
Sau3AI	GATC	3 cut(s)	8, 53, 58
Sau96I	GGNCC	2 cut(s)	88, 316
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	544
SfaNI	GCATC	3 cut(s)	117, 556, 595
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	735
SgrBI	CCGCGG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	530, 559
SmoI	CTYRAG	2 cut(s)	530, 559
Sse9I	AATT	4 cut(s)	187, 329, 380, 704
SsiI	CCGC	2 cut(s)	42, 44
SspMI	CTAG	3 cut(s)	6, 14, 141
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	2 cut(s)	115, 675
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	191, 389, 735
TasI	AATT	4 cut(s)	187, 329, 380, 704
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	44, 47
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	3 cut(s)	114, 258, 271
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	6 cut(s)	173, 348, 503, 555, 691, 714
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	3 cut(s)	14, 393, 737
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	3 cut(s)	114, 258, 271
Van91I	CCANNNNNTGG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	187, 380
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	6, 14, 141
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.