Rh6AG028100

BEL1-like homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002935
Physical Location & Seq
Reverse (-)
3459136 .. 3459685
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG028100.1

Sequence Viewer

Length: 444 bp
ATGGGGAATGCGCTTACTTCTTCTTCAAGCTCACTGAATCAGCAGTCTTTGGCAGCAGTAATTGGGAATTCGAGATATCTAAAGCCAGCTCAGTCACTATTACAAGAGATAGTTAGTGTTGGTGGAAAGGCAGTTGATATCAGCAGTGAAAAACATGTTGGGAAAATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTAATGTCAGCTGATAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTGAGTGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTCCAGGCACTTTGGCAGCTTAA

Protein Analysis

147

Amino Acids

15.98

Weight (kDa)

5.61

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 20 - 135 1e-24 Associated with HOX
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AcsI RAATTY 2 cut(s) 67, 260
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 337, 425
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 3 cut(s) 27, 214, 266
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 5 cut(s) 30, 89, 248, 403, 440
AluI AGCT 5 cut(s) 30, 89, 248, 403, 440
AoxI GGCC 3 cut(s) 196, 235, 416
ApeKI GCWGC 4 cut(s) 53, 228, 385, 437
ApoI RAATTY 2 cut(s) 67, 260
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 280
BbvI GCAGC 3 cut(s) 65, 215, 397
BccI CCATC 2 cut(s) 339, 358
BciT130I CCWGG 1 cut(s) 426
BisI GCNGC 4 cut(s) 54, 229, 386, 438
BlsI GCNGC 4 cut(s) 55, 230, 387, 439
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 425
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 426
BseLI CCNNNNNNNGG 2 cut(s) 337, 425
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 65, 215, 397
BsgI GTGCAG 1 cut(s) 398
BshFI GGCC 3 cut(s) 198, 237, 418
BslI CCNNNNNNNGG 2 cut(s) 337, 425
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 198, 237, 418
BspANI GGCC 3 cut(s) 198, 237, 418
BspCNI CTCAG 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 13
BstMWI GCNNNNNNNGC 4 cut(s) 195, 234, 385, 415
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 65, 215, 397
BsuRI GGCC 3 cut(s) 198, 237, 418
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 32, 151
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 155, 257, 420
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco32I GATATC 2 cut(s) 77, 139
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 424
EcoRV GATATC 2 cut(s) 77, 139
FaeI CATG 3 cut(s) 158, 260, 423
FaiI YATR 4 cut(s) 156, 171, 258, 421
FatI CATG 3 cut(s) 154, 256, 419
Fnu4HI GCNGC 4 cut(s) 54, 229, 386, 438
Fsp4HI GCNGC 4 cut(s) 54, 229, 386, 438
GlaI GCGC 1 cut(s) 12
GluI GCNGC 4 cut(s) 54, 229, 386, 438
HaeIII GGCC 3 cut(s) 198, 237, 418
HhaI GCGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 158, 260, 423
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 231, 379
HpyF10VI GCNNNNNNNGC 4 cut(s) 195, 234, 385, 415
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 3 cut(s) 158, 260, 423
HspAI GCGC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 6 cut(s) 99, 281, 365, 391, 411, 438
Lsp1109I GCAGC 3 cut(s) 65, 215, 397
MaeIII GTNAC 1 cut(s) 93
MboII GAAGA 5 cut(s) 12, 15, 195, 311, 353
MluCI AATT 4 cut(s) 60, 67, 209, 260
MnlI CCTC 5 cut(s) 170, 179, 293, 295, 301
MseI TTAA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 4 cut(s) 195, 234, 385, 415
NlaIII CATG 3 cut(s) 158, 260, 423
NmuCI GTSAC 1 cut(s) 93
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 4 cut(s) 55, 230, 387, 439
PscI ACATGT 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspPI GGNCC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 442
SatI GCNGC 4 cut(s) 54, 229, 386, 438
Sau96I GGNCC 1 cut(s) 196
ScaI AGTACT 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 426
SetI ASST 9 cut(s) 32, 91, 181, 250, 285, 293, 306, 405, 442
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 4 cut(s) 60, 67, 209, 260
StyD4I CCNGG 1 cut(s) 424
TaqI TCGA 2 cut(s) 71, 269
TasI AATT 4 cut(s) 60, 67, 209, 260
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 442
Tru9I TTAA 1 cut(s) 442
TscAI CASTG 2 cut(s) 39, 151
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 4 cut(s) 53, 228, 385, 437
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 39, 151
Van91I CCANNNNNTGG 1 cut(s) 337
XapI RAATTY 2 cut(s) 67, 260
XceI RCATGY 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.