Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Reverse (-)

1122549 .. 1123562

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTAATGTCAGCTGATAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGATGTGAGAATGGGTGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTCCAGGCACTTTGGCAGCTTAAGGGATGCAATAATGTCATATATATCCAGAAAAGCGAAAGTTGATGCAAGATTTTCTGAAAGTGAGACAGTGTTAGACAGAAGAGAATGTCCCTTCAACAGCTTGGGATTATCCATGGCCAAAGGCAAGCAGCTTGGAGACCAATTAGAGGGCTGCATGAGAACTTGGCTTTTCAAACACTTTCTTCATCCTTATCCTTATGACTCTGAGAAGCTAATGTTGGCATCACAAACAGGCCTGTCCAAGAACCAAGAAATGTACAAAGAAGAATTTGCGGATTCTTCACAAGACTCGAATCCAGTAGCTAGTAGTTCCGTGACCGGTGAAAATGACACAGATCACACAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

194

Amino Acids

21.46

Weight (kDa)

5.43

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	56 - 82	1.4e-07	Associated with HOX
Homeobox_KN	PF05920	133 - 161	4.6e-08	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	95, 500
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	213, 379
AflII	CTTAAG	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	49, 101, 328, 406
AjnI	CCWGG	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	7 cut(s)	83, 191, 228, 333, 364, 445, 536
AluI	AGCT	7 cut(s)	83, 191, 228, 333, 364, 445, 536
Alw26I	GTCTC	2 cut(s)	290, 363
AoxI	GGCC	5 cut(s)	31, 70, 204, 348, 466
ApeKI	GCWGC	5 cut(s)	63, 173, 225, 361, 384
ApoI	RAATTY	2 cut(s)	95, 500
AsiGI	ACCGGT	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	115, 566
BalI	TGGCCA	1 cut(s)	350
BbvI	GCAGC	5 cut(s)	50, 185, 237, 371, 373
BciT130I	CCWGG	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	290, 363
BfaI	CTAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	229
BisI	GCNGC	5 cut(s)	64, 174, 226, 362, 385
BlsI	GCNGC	5 cut(s)	65, 175, 227, 363, 386
Bme1390I	CCNGG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	3 cut(s)	226, 265, 464
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 379
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	241, 418
BseLI	CCNNNNNNNGG	2 cut(s)	213, 379
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	5 cut(s)	50, 185, 237, 371, 373
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	5 cut(s)	33, 72, 206, 350, 468
BshTI	ACCGGT	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	213, 379
BsmAI	GTCTC	2 cut(s)	290, 363
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	5 cut(s)	33, 72, 206, 350, 468
Bso31I	GGTCTC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	1 cut(s)	568
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	5 cut(s)	33, 72, 206, 350, 468
BspCNI	CTCAG	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	129, 307
BstAFI	CTTAAG	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	241, 418
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	2 cut(s)	290, 363
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 69, 173, 203
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstV1I	GCAGC	5 cut(s)	50, 185, 237, 371, 373
BsuRI	GGCC	5 cut(s)	33, 72, 206, 350, 468
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	241, 418
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	490
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	4 cut(s)	92, 208, 346, 388
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	129, 307
EarI	CTCTTC	2 cut(s)	129, 307
Eco130I	CCWWGG	1 cut(s)	345
Eco147I	AGGCCT	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	4 cut(s)	95, 211, 349, 391
FaiI	YATR	9 cut(s)	6, 93, 209, 250, 252, 254, 347, 389, 432
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	4 cut(s)	91, 207, 345, 387
Fnu4HI	GCNGC	5 cut(s)	64, 174, 226, 362, 385
FokI	GGATG	2 cut(s)	248, 405
Fsp4HI	GCNGC	5 cut(s)	64, 174, 226, 362, 385
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	5 cut(s)	64, 174, 226, 362, 385
HaeIII	GGCC	5 cut(s)	33, 72, 206, 350, 468
HapII	CCGG	1 cut(s)	552
Hin1II	CATG	4 cut(s)	95, 211, 349, 391
HinfI	GANTC	4 cut(s)	434, 509, 521, 526
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	2 cut(s)	115, 566
Hpy188I	TCNGA	3 cut(s)	43, 289, 439
Hpy188III	TCNNGA	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	5 cut(s)	66, 167, 239, 278, 387
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 69, 173, 203
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	95, 211, 349, 391
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	5 cut(s)	50, 185, 237, 371, 373
LweI	GCATC	3 cut(s)	226, 265, 464
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	6 cut(s)	30, 146, 324, 407, 504, 509
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	4 cut(s)	44, 95, 374, 500
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	428, 515
MnlI	CCTC	6 cut(s)	5, 14, 128, 130, 136, 373
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	2 cut(s)	230, 583
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	229
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	4 cut(s)	30, 69, 173, 203
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	4 cut(s)	95, 211, 349, 391
NmuCI	GTSAC	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	509, 526
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	65, 175, 227, 363, 386
PleI	GAGTC	2 cut(s)	428, 515
PpsI	GAGTC	2 cut(s)	428, 515
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	230, 583
SatI	GCNGC	5 cut(s)	64, 174, 226, 362, 385
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	428, 515
ScrFI	CCNGG	1 cut(s)	214
SfaNI	GCATC	3 cut(s)	226, 265, 464
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	200, 229
SmoI	CTYRAG	2 cut(s)	200, 229
Sse9I	AATT	4 cut(s)	44, 95, 374, 500
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	104, 524
TasI	AATT	4 cut(s)	44, 95, 374, 500
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	509, 526
Tru1I	TTAA	2 cut(s)	230, 583
Tru9I	TTAA	2 cut(s)	230, 583
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	5 cut(s)	63, 173, 225, 361, 384
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	108, 407
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	95, 500
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.