Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Forward (+)

33972035 .. 33976068

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G373700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGTTTCACAAGACTCACCCCCAAATCCAGCTTCAAGTATCTTTCACCAATTCATTATCTCAGACTCCATTGCTGCCCAAAACCATTTGGAAAGCCAACACCTTGATGCTTATGAGTCTTCTTTTCGGAATAGAAACACATTCCCTCAGTCTCTTGGTGTCCTGCCCAGCCTTCATTCTCTTGGGGAGAGAATGTCCAGATCAGTGGCCCTTGTTCAAGCTCCCACAGGTGCAGAGGACTCAGATATGAACAACCAAACAAGGCATCTGATGGATCTTCCTAGAGCAGCAACGGAGAACCAAGCACAGAGGCTCTCACTGTCCCTTGGTTCCCACATGCTTGTTCCATCTGTCCAATATAGGCAGAGGTCTATGAATTCAGACCTCATGAGCCACAATCACTTTATCATTGGAGAAGAATCAGGGGAAGCTTGCAATCCAGGAGTTGAACATGTAAGCGATGAGTATTGTTTCATAGGCAGTGCGCTTGCTTCGTCTTCAAACTCGCTAAGTCGATCTTGTTCCACTTCATATGGAACAGAATCTTTAGCGGATGTTATTGGGAATTCAAGATATCTAAAACCAGCTCAGTCCCTCTTAGATGAGATTGTTAATGTTGGTGGAAAACAAGTTGACATCAGCAATGAAAAACATGTTGGAAAGTTATATGGTGAAGGCCGGAGAGGTGCTATGGGGTTTTCTTCTGAACTGAAAGCAGAGTTGTGCTGCAATGGGCTCATGTCCGCTGATAAGCATGAATTGCAAGCTAGACTTGCAAACCTTATCACCTTGTTGGAACAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTAGGTGAAGGAGCAGCCAAGTCTTACACAGCTCTGGCACTCAAGGCCATGTCCAGGCATTTTTGCAGCTTAAGAGATGCTATAGTTTCCCATATCTATGCCGAAAAACGAAAGCTGTTGCAAGACGTACCGAAAATCAGTTCGGGACTATCACAACTTAACTTGTTTGACAGAGAGTGCAGACACAAAAGAATGTCTCTTCAACAGCTTGGCATTTTCCAGAGCCAACGCCAAGCTTTCAGACCAATTCGAGGCCTGCCAGAGACCTCCGTGGCAATTCTTCGCACTTGGCTTTTTGAACACTTCCTCCACCCTTATCCAAATGACTCTGAGAAGCTTCTGTTGGCATCACAAACAGGCTTGTCAAAGAACCAAGTTTCAAATTGGTTCATAAATGCGCGAGTTCGGCTCTGGAAACCTATGATAGAAGAAATGTACAAAGAAGAGTTTGGGGAGTCTTCGGAGGATTCGAACTCTTTTGCCGGTGGCTCCATGACCGGTGAAGGTAACACAGATCACACAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

466

Amino Acids

51.84

Weight (kDa)

5.78

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccII	CGCG	1 cut(s)	1267
AciI	CCGC	2 cut(s)	551, 744
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	376, 565
AfaI	GTAC	3 cut(s)	824, 996, 1304
AfiI	CCNNNNNNNGG	3 cut(s)	835, 921, 1118
AflII	CTTAAG	1 cut(s)	937
AflIII	ACRYGT	2 cut(s)	451, 652
AgeI	ACCGGT	1 cut(s)	1364
AgsI	TTSAA	8 cut(s)	36, 218, 449, 501, 570, 1070, 1166, 1248
AjnI	CCWGG	2 cut(s)	439, 920
AjuI	GAANNNNNNNTTGG	6 cut(s)	16, 48, 639, 671, 1193, 1225
AloI	GAACNNNNNNTCC	2 cut(s)	1158, 1190
Alw26I	GTCTC	3 cut(s)	156, 1068, 1124
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	4 cut(s)	207, 676, 912, 1120
ApeKI	GCWGC	5 cut(s)	74, 287, 726, 881, 933
ApoI	RAATTY	2 cut(s)	376, 565
AsiGI	ACCGGT	1 cut(s)	1364
AspLEI	GCGC	2 cut(s)	487, 1267
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	6 cut(s)	9, 38, 683, 778, 884, 1379
AsuII	TTCGAA	1 cut(s)	1337
BanII	GRGCYC	1 cut(s)	738
BbsI	GAAGAC	3 cut(s)	111, 489, 1317
BbvI	GCAGC	5 cut(s)	61, 299, 713, 893, 945
BccI	CCATC	4 cut(s)	265, 355, 837, 856
BciT130I	CCWGG	2 cut(s)	441, 922
BcoDI	GTCTC	3 cut(s)	156, 1068, 1124
BfaI	CTAG	2 cut(s)	282, 768
BfmI	CTRYAG	1 cut(s)	948
BfrI	CTTAAG	1 cut(s)	937
BisI	GCNGC	5 cut(s)	75, 288, 727, 882, 934
BlsI	GCNGC	5 cut(s)	76, 289, 728, 883, 935
BmcAI	AGTACT	1 cut(s)	824
Bme1390I	CCNGG	2 cut(s)	441, 922
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	331, 1357
BmrFI	CCNGG	2 cut(s)	441, 922
BmsI	GCATC	4 cut(s)	97, 274, 934, 1223
BpiI	GAAGAC	3 cut(s)	111, 489, 1317
BplI	GAGNNNNNCTC	2 cut(s)	1260, 1292
Bpu14I	TTCGAA	1 cut(s)	1337
BpuEI	CTTGAG	1 cut(s)	893
BsaI	GGTCTC	1 cut(s)	1124
BsaJI	CCNNGG	2 cut(s)	325, 1137
BsaWI	WCCGGW	1 cut(s)	1364
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 1158, 1188
Bsc4I	CCNNNNNNNGG	3 cut(s)	835, 921, 1118
Bse118I	RCCGGY	2 cut(s)	1349, 1364
Bse3DI	GCAATG	3 cut(s)	69, 649, 736
BseBI	CCWGG	2 cut(s)	441, 922
BseDI	CCNNGG	2 cut(s)	325, 1137
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	3 cut(s)	835, 921, 1118
BseMI	GCAATG	3 cut(s)	69, 649, 736
BseMII	CTCAG	5 cut(s)	75, 161, 255, 602, 1188
BseXI	GCAGC	5 cut(s)	61, 299, 713, 893, 945
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	2 cut(s)	252, 1066
Bsh1236I	CGCG	1 cut(s)	1267
BshFI	GGCC	4 cut(s)	209, 678, 914, 1122
BshTI	ACCGGT	1 cut(s)	1364
BsiSI	CCGG	3 cut(s)	679, 1350, 1365
BslFI	GGGAC	3 cut(s)	307, 577, 1026
BslI	CCNNNNNNNGG	3 cut(s)	835, 921, 1118
BsmAI	GTCTC	3 cut(s)	156, 1068, 1124
BsmFI	GGGAC	3 cut(s)	307, 577, 1026
BsnI	GGCC	4 cut(s)	209, 678, 914, 1122
Bso31I	GGTCTC	1 cut(s)	1124
Bsp119I	TTCGAA	1 cut(s)	1337
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp1407I	TGTACA	1 cut(s)	1302
Bsp143I	GATC	4 cut(s)	200, 274, 515, 1381
BspACI	CCGC	2 cut(s)	551, 744
BspANI	GGCC	4 cut(s)	209, 678, 914, 1122
BspCNI	CTCAG	5 cut(s)	74, 160, 254, 601, 1189
BspFNI	CGCG	1 cut(s)	1267
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	331, 1357
BspPI	GGATC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	1337
BspTI	CTTAAG	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	1124
BsrDI	GCAATG	3 cut(s)	69, 649, 736
BsrFI	RCCGGY	2 cut(s)	1349, 1364
BsrGI	TGTACA	1 cut(s)	1302
BssAI	RCCGGY	2 cut(s)	1349, 1364
BssECI	CCNNGG	2 cut(s)	325, 1137
BssMI	GATC	4 cut(s)	200, 274, 515, 1381
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	441, 922
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	1071, 1305
BstAFI	CTTAAG	1 cut(s)	937
BstAPI	GCANNNNNTGC	1 cut(s)	760
BstAUI	TGTACA	1 cut(s)	1302
BstBI	TTCGAA	1 cut(s)	1337
BstC8I	GCNNGC	4 cut(s)	433, 489, 765, 1124
BstDEI	CTNAG	7 cut(s)	61, 147, 241, 509, 588, 598, 1197
BstDSI	CCRYGG	1 cut(s)	1137
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	1267
BstHHI	GCGC	2 cut(s)	487, 1267
BstKTI	GATC	4 cut(s)	203, 277, 518, 1384
BstMAI	GTCTC	3 cut(s)	156, 1068, 1124
BstMBI	GATC	4 cut(s)	200, 274, 515, 1381
BstMWI	GCNNNNNNNGC	4 cut(s)	760, 773, 911, 1273
BstNI	CCWGG	2 cut(s)	441, 922
BstNSI	RCATGY	3 cut(s)	340, 455, 656
BstSCI	CCNGG	2 cut(s)	439, 920
BstSFI	CTRYAG	1 cut(s)	948
BstUI	CGCG	1 cut(s)	1267
BstV1I	GCAGC	5 cut(s)	61, 299, 713, 893, 945
BstV2I	GAAGAC	3 cut(s)	111, 489, 1317
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	4 cut(s)	209, 678, 914, 1122
BtgI	CCRYGG	1 cut(s)	1137
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	3 cut(s)	210, 317, 487
Cac8I	GCNNGC	4 cut(s)	433, 489, 765, 1124
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	2 cut(s)	487, 1267
Cfr10I	RCCGGY	2 cut(s)	1349, 1364
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	823, 995, 1303
CspAI	ACCGGT	1 cut(s)	1364
CviAII	CATG	8 cut(s)	337, 388, 452, 653, 739, 755, 916, 1360
CviQI	GTAC	3 cut(s)	823, 995, 1303
DdeI	CTNAG	7 cut(s)	61, 147, 241, 509, 588, 598, 1197
DpnI	GATC	4 cut(s)	202, 276, 517, 1383
DpnII	GATC	4 cut(s)	200, 274, 515, 1381
Eam1104I	CTCTTC	2 cut(s)	1071, 1305
EarI	CTCTTC	2 cut(s)	1071, 1305
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	1122
Eco24I	GRGCYC	1 cut(s)	738
Eco31I	GGTCTC	1 cut(s)	1124
Eco32I	GATATC	1 cut(s)	575
EcoRI	GAATTC	2 cut(s)	376, 565
EcoRII	CCWGG	2 cut(s)	439, 920
EcoRV	GATATC	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	8 cut(s)	340, 391, 455, 656, 742, 758, 919, 1363
FalI	AAGNNNNNCTT	4 cut(s)	502, 534, 756, 788
FaqI	GGGAC	3 cut(s)	307, 577, 1026
FatI	CATG	8 cut(s)	336, 387, 451, 652, 738, 754, 915, 1359
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	5 cut(s)	75, 288, 727, 882, 934
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	5 cut(s)	75, 288, 727, 882, 934
FspBI	CTAG	2 cut(s)	282, 768
GlaI	GCGC	2 cut(s)	486, 1266
GluI	GCNGC	5 cut(s)	75, 288, 727, 882, 934
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	209, 678, 914, 1122
HapII	CCGG	3 cut(s)	679, 1350, 1365
HhaI	GCGC	2 cut(s)	487, 1267
Hin1II	CATG	8 cut(s)	340, 391, 455, 656, 742, 758, 919, 1363
Hin6I	GCGC	2 cut(s)	485, 1265
HinP1I	GCGC	2 cut(s)	485, 1265
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	3 cut(s)	429, 1101, 1202
HinfI	GANTC	9 cut(s)	14, 65, 116, 239, 419, 542, 1193, 1322, 1334
HpaII	CCGG	3 cut(s)	679, 1350, 1365
HphI	GGTGA	6 cut(s)	9, 38, 683, 778, 884, 1379
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	9 cut(s)	64, 129, 244, 270, 382, 706, 1109, 1198, 1330
Hpy188III	TCNNGA	6 cut(s)	198, 388, 570, 1011, 1087, 1279
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	4 cut(s)	182, 668, 869, 1364
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	8 cut(s)	233, 435, 729, 763, 776, 933, 988, 1047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	760, 773, 911, 1273
HpyF3I	CTNAG	7 cut(s)	61, 147, 241, 509, 588, 598, 1197
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	8 cut(s)	340, 391, 455, 656, 742, 758, 919, 1363
HspAI	GCGC	2 cut(s)	485, 1265
Kzo9I	GATC	4 cut(s)	200, 274, 515, 1381
LmnI	GCTCC	3 cut(s)	226, 878, 1361
Lsp1109I	GCAGC	5 cut(s)	61, 299, 713, 893, 945
LweI	GCATC	4 cut(s)	97, 274, 934, 1223
MaeI	CTAG	2 cut(s)	282, 768
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	1 cut(s)	1373
MalI	GATC	4 cut(s)	202, 276, 517, 1383
MboI	GATC	4 cut(s)	200, 274, 515, 1381
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	7 cut(s)	50, 376, 565, 758, 1113, 1143, 1249
MlyI	GAGTC	6 cut(s)	8, 59, 125, 233, 1187, 1331
MmeI	TCCRAC	2 cut(s)	637, 774
MseI	TTAA	3 cut(s)	612, 938, 1026
MslI	CAYNNNNRTG	2 cut(s)	105, 963
MspA1I	CMGCKG	1 cut(s)	746
MspCI	CTTAAG	1 cut(s)	937
MspI	CCGG	3 cut(s)	679, 1350, 1365
MspR9I	CCNGG	2 cut(s)	441, 922
MvaI	CCWGG	2 cut(s)	441, 922
MvnI	CGCG	1 cut(s)	1267
MwoI	GCNNNNNNNGC	4 cut(s)	760, 773, 911, 1273
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	4 cut(s)	200, 274, 515, 1381
NlaIII	CATG	8 cut(s)	340, 391, 455, 656, 742, 758, 919, 1363
NlaIV	GGNNCC	2 cut(s)	331, 1357
NspI	RCATGY	3 cut(s)	340, 455, 656
NspV	TTCGAA	1 cut(s)	1337
PagI	TCATGA	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	1122
PciI	ACATGT	2 cut(s)	451, 652
PcsI	WCGNNNNNNNCGW	1 cut(s)	1334
PfeI	GAWTC	3 cut(s)	419, 542, 1334
PflMI	CCANNNNNTGG	1 cut(s)	835
PfoI	TCCNGGA	1 cut(s)	439
PinAI	ACCGGT	1 cut(s)	1364
PkrI	GCNGC	5 cut(s)	76, 289, 728, 883, 935
PleI	GAGTC	6 cut(s)	8, 59, 124, 233, 1187, 1330
PpsI	GAGTC	6 cut(s)	8, 59, 124, 233, 1187, 1330
PscI	ACATGT	2 cut(s)	451, 652
Psp6I	CCWGG	2 cut(s)	439, 920
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	439, 920
PspN4I	GGNNCC	2 cut(s)	331, 1357
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	3 cut(s)	824, 996, 1304
RsaNI	GTAC	3 cut(s)	823, 995, 1303
RseI	CAYNNNNRTG	2 cut(s)	105, 963
SaqAI	TTAA	3 cut(s)	612, 938, 1026
SatI	GCNGC	5 cut(s)	75, 288, 727, 882, 934
Sau3AI	GATC	4 cut(s)	200, 274, 515, 1381
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	824
SchI	GAGTC	6 cut(s)	8, 59, 125, 233, 1187, 1331
ScrFI	CCNGG	2 cut(s)	441, 922
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	4 cut(s)	97, 274, 934, 1223
SfcI	CTRYAG	1 cut(s)	948
SfuI	TTCGAA	1 cut(s)	1337
SmiMI	CAYNNNNRTG	2 cut(s)	105, 963
SmlI	CTYRAG	2 cut(s)	908, 937
SmoI	CTYRAG	2 cut(s)	908, 937
Sse9I	AATT	7 cut(s)	50, 376, 565, 758, 1113, 1143, 1249
SseBI	AGGCCT	1 cut(s)	1122
SsiI	CCGC	2 cut(s)	551, 744
SspMI	CTAG	2 cut(s)	282, 768
StuI	AGGCCT	1 cut(s)	1122
StyD4I	CCNGG	2 cut(s)	439, 920
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	3 cut(s)	514, 1117, 1337
TasI	AATT	7 cut(s)	50, 376, 565, 758, 1113, 1143, 1249
TatI	WGTACW	2 cut(s)	822, 1302
TfiI	GAWTC	3 cut(s)	419, 542, 1334
Tru1I	TTAA	3 cut(s)	612, 938, 1026
Tru9I	TTAA	3 cut(s)	612, 938, 1026
TscAI	CASTG	3 cut(s)	210, 324, 487
TseI	GCWGC	5 cut(s)	74, 287, 726, 881, 933
TspDTI	ATGAA	9 cut(s)	43, 164, 263, 389, 463, 519, 660, 771, 1246
TspGWI	ACGGA	2 cut(s)	308, 1126
TspRI	CASTG	3 cut(s)	210, 324, 487
Van91I	CCANNNNNTGG	1 cut(s)	835
Vha464I	CTTAAG	1 cut(s)	937
XapI	RAATTY	2 cut(s)	376, 565
XceI	RCATGY	3 cut(s)	340, 455, 656
XspI	CTAG	2 cut(s)	282, 768
ZrmI	AGTACT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.