Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Reverse (-)

3467843 .. 3468924

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTTCACAAGACTCACCCCCAAGCCAAGCCTCAAGTATTCTCCACCATTTCATTGTCTCAGACTCCATGGCAGCTCAAAACCACATGGAATACCAACACCAGCTTGATGCTGCTTACGCCTCTAATTTTCGAACCAGCACTAGCACATACCCTCAGTCTCTTGGTCAACTCCCCAGCATTCATTCCCTTGTGGAGAGAATGTCTAGATCACTAGACCTTCTTCATGCTCTTCCAATAGTCGCGGCAGAGGGAACGGATCATATGAGCCACACAAAGCTTCTAATGGACCAGCACCAAGCACTCTCACTGTCCCTTGGCTCACAGATGCTTCTTCCTCCTAGTTCTCATTCTGCTCATTATGTGACCGATGACTATTCGTTCATGGGGAATGCGCTTGCTTCGTCTTCAAGCTCACTGAATCCGCAGTCTTTGGCAGCAGTCATTGGGAATTCGAGATATCTAAAGCCAGCTCAGTCACTATTAGGAGAGATAGTTAGTGTTGGTGGAAAGGCAGTTGATATCAGCAGTGAAAAACATGTTGGGAAAATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTAATGTCAGCTGAGAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAAAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTGGGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTTCAGGCACTTTGGCAGCTTAAGGGATGCAATCATATATATGCAGAAAAGCGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

287

Amino Acids

31.23

Weight (kDa)

6.3

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	148 - 279	8.6e-37	Associated with HOX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	245, 425
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	451, 644
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	721, 807
AflII	CTTAAG	1 cut(s)	823
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	3 cut(s)	411, 598, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	8 cut(s)	77, 106, 280, 414, 473, 632, 785, 822
AluI	AGCT	8 cut(s)	77, 106, 280, 414, 473, 632, 785, 822
Alw26I	GTCTC	2 cut(s)	64, 165
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	580, 619, 798
ApeKI	GCWGC	6 cut(s)	74, 113, 437, 612, 767, 819
ApoI	RAATTY	2 cut(s)	451, 644
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	289, 580
AsuHPI	GGTGA	2 cut(s)	9, 664
AsuII	TTCGAA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	6 cut(s)	86, 100, 449, 599, 779, 831
BccI	CCATC	2 cut(s)	723, 742
BcoDI	GTCTC	2 cut(s)	64, 165
BfaI	CTAG	4 cut(s)	144, 207, 215, 342
BfrI	CTTAAG	1 cut(s)	823
BisI	GCNGC	7 cut(s)	75, 114, 246, 438, 613, 768, 820
BlsI	GCNGC	7 cut(s)	76, 115, 247, 439, 614, 769, 821
BmcAI	AGTACT	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	289, 580
BmsI	GCATC	3 cut(s)	100, 318, 820
BpiI	GAAGAC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	133
BpuEI	CTTGAG	2 cut(s)	19, 779
BsaJI	CCNNGG	2 cut(s)	69, 316
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 480, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	721, 807
Bse3DI	GCAATG	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	69, 316
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	2 cut(s)	721, 807
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	4 cut(s)	75, 170, 488, 624
BseXI	GCAGC	6 cut(s)	86, 100, 449, 599, 779, 831
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	582, 621, 800
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	721, 807
BsmAI	GTCTC	2 cut(s)	64, 165
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	2 cut(s)	180, 397
BsnI	GGCC	3 cut(s)	582, 621, 800
Bsp119I	TTCGAA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	209, 259
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	245, 425
BspANI	GGCC	3 cut(s)	582, 621, 800
BspCNI	CTCAG	4 cut(s)	74, 169, 487, 625
BspFNI	CGCG	1 cut(s)	245
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	69, 316
BssMI	GATC	2 cut(s)	209, 259
BssT1I	CCWWGG	2 cut(s)	69, 316
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	823
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	399, 471
BstDEI	CTNAG	4 cut(s)	61, 156, 474, 633
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	2 cut(s)	212, 262
BstMAI	GTCTC	2 cut(s)	64, 165
BstMBI	GATC	2 cut(s)	209, 259
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 579, 618, 767, 797
BstNSI	RCATGY	1 cut(s)	542
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	6 cut(s)	86, 100, 449, 599, 779, 831
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	582, 621, 800
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	3 cut(s)	308, 416, 535
Cac8I	GCNNGC	2 cut(s)	399, 471
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	289, 580
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	7 cut(s)	70, 88, 227, 385, 539, 641, 802
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	4 cut(s)	61, 156, 474, 633
DpnI	GATC	2 cut(s)	211, 261
DpnII	GATC	2 cut(s)	209, 259
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	69, 316
Eco32I	GATATC	2 cut(s)	461, 523
Eco47I	GGWCC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	451
EcoRV	GATATC	2 cut(s)	461, 523
EcoT14I	CCWWGG	2 cut(s)	69, 316
ErhI	CCWWGG	2 cut(s)	69, 316
FaeI	CATG	7 cut(s)	73, 91, 230, 388, 542, 644, 805
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	7 cut(s)	69, 87, 226, 384, 538, 640, 801
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	7 cut(s)	75, 114, 246, 438, 613, 768, 820
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	7 cut(s)	75, 114, 246, 438, 613, 768, 820
FspBI	CTAG	4 cut(s)	144, 207, 215, 342
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	7 cut(s)	75, 114, 246, 438, 613, 768, 820
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	582, 621, 800
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	7 cut(s)	73, 91, 230, 388, 542, 644, 805
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	14, 65, 421
HphI	GGTGA	2 cut(s)	9, 664
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	64, 592
Hpy188III	TCNNGA	2 cut(s)	207, 456
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	615, 761, 833, 847
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 579, 618, 767, 797
HpyF3I	CTNAG	4 cut(s)	61, 156, 474, 633
Hsp92II	CATG	7 cut(s)	73, 91, 230, 388, 542, 644, 805
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	2 cut(s)	209, 259
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	764
LpnPI	CCDG	9 cut(s)	116, 151, 190, 305, 483, 665, 747, 773, 793
Lsp1109I	GCAGC	6 cut(s)	86, 100, 449, 599, 779, 831
LweI	GCATC	3 cut(s)	100, 318, 820
MaeI	CTAG	4 cut(s)	144, 207, 215, 342
MaeIII	GTNAC	2 cut(s)	364, 477
MalI	GATC	2 cut(s)	211, 261
MboI	GATC	2 cut(s)	209, 259
MboII	GAAGA	6 cut(s)	215, 224, 326, 399, 579, 737
MluCI	AATT	4 cut(s)	127, 451, 593, 644
MlyI	GAGTC	2 cut(s)	8, 59
MnlI	CCTC	9 cut(s)	43, 133, 165, 244, 348, 554, 563, 677, 685
MseI	TTAA	1 cut(s)	824
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	632
MspCI	CTTAAG	1 cut(s)	823
Mva1269I	GAATGC	2 cut(s)	180, 397
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	119, 579, 618, 767, 797
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	2 cut(s)	209, 259
NlaIII	CATG	7 cut(s)	73, 91, 230, 388, 542, 644, 805
NmuCI	GTSAC	2 cut(s)	364, 477
NspI	RCATGY	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	237
PctI	GAATGC	2 cut(s)	180, 397
PfeI	GAWTC	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	7 cut(s)	76, 115, 247, 439, 614, 769, 821
PleI	GAGTC	2 cut(s)	8, 59
PpsI	GAGTC	2 cut(s)	8, 59
PscI	ACATGT	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	289, 580
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	1 cut(s)	842
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	7 cut(s)	75, 114, 246, 438, 613, 768, 820
Sau3AI	GATC	2 cut(s)	209, 259
Sau96I	GGNCC	2 cut(s)	289, 580
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	2 cut(s)	8, 59
SfaNI	GCATC	3 cut(s)	100, 318, 820
SfuI	TTCGAA	1 cut(s)	133
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	3 cut(s)	34, 794, 823
SmoI	CTYRAG	3 cut(s)	34, 794, 823
Sse9I	AATT	4 cut(s)	127, 451, 593, 644
SsiI	CCGC	2 cut(s)	245, 425
SspMI	CTAG	4 cut(s)	144, 207, 215, 342
StyI	CCWWGG	2 cut(s)	69, 316
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	133, 455, 653
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	127, 451, 593, 644
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	3 cut(s)	315, 423, 535
TseFI	GTSAC	2 cut(s)	364, 477
TseI	GCWGC	6 cut(s)	74, 113, 437, 612, 767, 819
Tsp45I	GTSAC	2 cut(s)	364, 477
TspDTI	ATGAA	5 cut(s)	43, 173, 215, 373, 657
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	3 cut(s)	315, 423, 535
Van91I	CCANNNNNTGG	1 cut(s)	721
Vha464I	CTTAAG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	451, 644
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	542
XspI	CTAG	4 cut(s)	144, 207, 215, 342
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.