Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Forward (+)

1749277 .. 1751748

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1024300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTGTCACAAGACTCACCTTCAAATCCCTCCTCAAGCATTTTCCACCAGTTCATAATCTCAGACTCCATTTCTGCTCAAAACCATCATCTGGAAAGCCAGCACCTTGACGCTTATCCGCCTTCATTTCAAACCAGTACCACAGTTCCACAAGCTCTCGGAGTCCTCGCCGGCATTCACTCCCTCGGCGAAAGAATGCCCCGATCAGTAGACCTTGTTCAAGCTCCTACTGGCGCATCAGTGGAGAACCAAGCACAGCGGCTTTCGCTCTCCCTCGGTTCCCGCATGCTTGTTCCTTCTGTCCAGTACCGGTACAACAACTTCCTCATTGGGGAAGAATCAGGGGAGGCTTGCAACCCGGGAGTTGAGCACGTAGGCGATGAGTACTGCTTCGTGGGCGGCACACTTGCTTCGCATTCAAGGGCACTGAATAGATCCTGCTCCACTTCTTATGGAGCAGAATCCGTAGCTGCTGTCATTGCAAATTCGAAATATCTTAAACCGGCTCAGTCCCTCTTGGAAGAGATTGTTAATGTTGGCGGAAAATTGGTTGACATTAGCAATGAGAAATATGTTGGGAAATTGTACGGAGAAGGGCGGCAAGGCGGTATGGGGCTCTCCTCTGAGCTAAAAGCAGAGCTGTCTTGCAATGCCGGGCTCATGAACTCCGACAAACACGAATTGCAAGCTAGACTTGCAAGCCTCATCACATTATTGGAACAGGTTGAGGATAGATGTGGGACGTACTACCATCAAATGGAACAAGTGATATCATCATTTGAGATGGTGGTAGGGGAAGGAGCAGCCAAGTCCTACACAGCTCTGGCACTCAAGGCCATGTCAAGGCATTTTTGCAGCTTGAGAGATGCCATAGTATCACAAATCTACACTGAGAAGCGAAAGCTGCTGCAAGATGTTCCGAAAATCAGCAGCGGGTTATCGCAACTGAACTTGCTTGATAGAGAGTGCAGGCACAAAAGAATGTCCCTTCAACAGCTCGGCATTTTCCAGAGCCAACGCCAAGCTTTCAGACCAATTCGTGGATTGCCAGAGACATCTGTTGCGATTCTTCGCACTTGGCTTTTCGAACACTTCCTCCACCCTTACCCGAATGACAATGAAAAGCTGCTGTTGGCATCACAAACAGGGCTGTCCAAGAACCAAGTTGCGAATTGGTTCATAAACGCGCGTGTCCGGCTGTGGAAACCTATGATTGAAGAAATGTACAAGGAAGAGTTTGGGGAGTCTTCAGAGGACTCTAACTCTTTAGCCGCCGGTTCCATGACCGGCGAAGGCAACACAGATCAGACAGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

440

Amino Acids

48.37

Weight (kDa)

5.76

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	159 - 292	1.5e-37	Associated with HOX
Homeobox_KN	PF05920	360 - 399	9.5e-18	Homeobox KN domain
Homeodomain	PF00046	367 - 399	7.5e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	91, 757, 1040
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	1187, 1189
AciI	CCGC	9 cut(s)	119, 259, 283, 399, 540, 598, 606, 933, 1272
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	1233
AfaI	GTAC	7 cut(s)	139, 308, 314, 386, 587, 746, 1226
AfiI	CCNNNNNNNGG	5 cut(s)	91, 331, 757, 843, 1040
AgeI	ACCGGT	1 cut(s)	309
AgsI	TTSAA	6 cut(s)	24, 131, 221, 420, 992, 1217
AloI	GAACNNNNNNTCC	2 cut(s)	1080, 1112
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	1 cut(s)	429
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	834
ApeKI	GCWGC	7 cut(s)	470, 803, 855, 904, 907, 930, 1126
ApoI	RAATTY	1 cut(s)	484
AsiGI	ACCGGT	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	1175
AspLEI	GCGC	2 cut(s)	236, 1189
AsuC2I	CCSGG	3 cut(s)	359, 360, 655
AsuHPI	GGTGA	1 cut(s)	9
AsuII	TTCGAA	2 cut(s)	488, 1086
AvaI	CYCGRG	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	618, 660
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	1239
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	7 cut(s)	457, 815, 867, 891, 894, 942, 1113
BccI	CCATC	3 cut(s)	93, 759, 778
BcnI	CCSGG	3 cut(s)	359, 360, 655
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	1 cut(s)	690
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	3 cut(s)	359, 360, 655
BmeT110I	CYCGRG	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	280, 1279
BmrFI	CCNGG	3 cut(s)	359, 360, 655
BmsI	GCATC	3 cut(s)	245, 856, 1145
BpiI	GAAGAC	1 cut(s)	1239
Bpu14I	TTCGAA	2 cut(s)	488, 1086
BpuEI	CTTGAG	3 cut(s)	19, 815, 880
BpuMI	CCSGG	3 cut(s)	359, 360, 655
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	184, 274, 358
BsaWI	WCCGGW	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 331, 757, 843, 1040
Bse118I	RCCGGY	5 cut(s)	170, 309, 502, 1274, 1286
Bse1I	ACTGG	4 cut(s)	49, 135, 235, 304
Bse3DI	GCAATG	3 cut(s)	477, 568, 655
BseDI	CCNNGG	3 cut(s)	184, 274, 358
BseLI	CCNNNNNNNGG	5 cut(s)	91, 331, 757, 843, 1040
BseMI	GCAATG	3 cut(s)	477, 568, 655
BseMII	CTCAG	4 cut(s)	75, 521, 615, 882
BseNI	ACTGG	4 cut(s)	49, 135, 235, 304
BseRI	GAGGAG	2 cut(s)	22, 610
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	7 cut(s)	457, 815, 867, 891, 894, 942, 1113
BsgI	GTGCAG	1 cut(s)	988
Bsh1236I	CGCG	2 cut(s)	1187, 1189
BshFI	GGCC	1 cut(s)	836
BshTI	ACCGGT	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	8 cut(s)	171, 310, 359, 503, 654, 1195, 1275, 1287
BslFI	GGGAC	3 cut(s)	496, 754, 970
BslI	CCNNNNNNNGG	5 cut(s)	91, 331, 757, 843, 1040
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	3 cut(s)	496, 754, 970
BsmI	GAATGC	3 cut(s)	174, 201, 415
BsnI	GGCC	1 cut(s)	836
BsoBI	CYCGRG	1 cut(s)	358
Bsp119I	TTCGAA	2 cut(s)	488, 1086
Bsp1286I	GDGCHC	4 cut(s)	372, 427, 618, 660
Bsp1407I	TGTACA	1 cut(s)	1224
Bsp143I	GATC	3 cut(s)	203, 434, 1303
BspACI	CCGC	9 cut(s)	119, 259, 283, 399, 540, 598, 606, 933, 1272
BspANI	GGCC	1 cut(s)	836
BspCNI	CTCAG	4 cut(s)	74, 520, 616, 883
BspFNI	CGCG	2 cut(s)	1187, 1189
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	280, 1279
BspPI	GGATC	1 cut(s)	429
BspT104I	TTCGAA	2 cut(s)	488, 1086
BsrDI	GCAATG	3 cut(s)	477, 568, 655
BsrFI	RCCGGY	5 cut(s)	170, 309, 502, 1274, 1286
BsrGI	TGTACA	1 cut(s)	1224
BsrI	ACTGG	4 cut(s)	49, 135, 235, 304
BssAI	RCCGGY	5 cut(s)	170, 309, 502, 1274, 1286
BssECI	CCNNGG	3 cut(s)	184, 274, 358
BssMI	GATC	3 cut(s)	203, 434, 1303
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	516, 1227
BstAUI	TGTACA	1 cut(s)	1224
BstBAI	YACGTR	1 cut(s)	373
BstBI	TTCGAA	2 cut(s)	488, 1086
BstC8I	GCNNGC	7 cut(s)	101, 172, 287, 352, 687, 700, 971
BstDEI	CTNAG	4 cut(s)	61, 507, 624, 891
BstFNI	CGCG	2 cut(s)	1187, 1189
BstHHI	GCGC	2 cut(s)	236, 1189
BstKTI	GATC	3 cut(s)	206, 437, 1306
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	3 cut(s)	203, 434, 1303
BstMWI	GCNNNNNNNGC	7 cut(s)	265, 396, 479, 695, 833, 904, 1195
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	3 cut(s)	357, 358, 653
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	2 cut(s)	1187, 1189
BstV1I	GCAGC	7 cut(s)	457, 815, 867, 891, 894, 942, 1113
BstV2I	GAAGAC	1 cut(s)	1239
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	836
BtgZI	GCGATG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	246, 425, 888
Cac8I	GCNNGC	7 cut(s)	101, 172, 287, 352, 687, 700, 971
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	2 cut(s)	236, 1189
Cfr10I	RCCGGY	5 cut(s)	170, 309, 502, 1274, 1286
Cfr9I	CCCGGG	1 cut(s)	358
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	7 cut(s)	138, 307, 313, 385, 586, 745, 1225
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	4 cut(s)	286, 661, 838, 1282
CviQI	GTAC	7 cut(s)	138, 307, 313, 385, 586, 745, 1225
DdeI	CTNAG	4 cut(s)	61, 507, 624, 891
DpnI	GATC	3 cut(s)	205, 436, 1305
DpnII	GATC	3 cut(s)	203, 434, 1303
Eam1104I	CTCTTC	2 cut(s)	516, 1227
EarI	CTCTTC	2 cut(s)	516, 1227
EciI	GGCGGA	2 cut(s)	108, 555
Eco24I	GRGCYC	2 cut(s)	618, 660
Eco32I	GATATC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	1233
Eco88I	CYCGRG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	771
EcoT38I	GRGCYC	2 cut(s)	618, 660
FaeI	CATG	4 cut(s)	289, 664, 841, 1285
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	3 cut(s)	496, 754, 970
FatI	CATG	4 cut(s)	285, 660, 837, 1281
FauI	CCCGC	2 cut(s)	290, 926
FblI	GTMKAC	1 cut(s)	210
FriOI	GRGCYC	2 cut(s)	618, 660
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	2 cut(s)	235, 1188
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	8 cut(s)	171, 310, 359, 503, 654, 1195, 1275, 1287
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	236, 1189
Hin1II	CATG	4 cut(s)	289, 664, 841, 1285
Hin6I	GCGC	2 cut(s)	234, 1187
HinP1I	GCGC	2 cut(s)	234, 1187
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	1023
HinfI	GANTC	8 cut(s)	14, 65, 162, 338, 461, 1066, 1244, 1256
HpaII	CCGG	8 cut(s)	171, 310, 359, 503, 654, 1195, 1275, 1287
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	211, 553
Hpy188I	TCNGA	8 cut(s)	64, 161, 625, 670, 921, 1031, 1252, 1308
Hpy188III	TCNNGA	3 cut(s)	92, 661, 1009
Hpy8I	GTNNAC	2 cut(s)	211, 553
HpyAV	CCTTC	7 cut(s)	30, 132, 306, 587, 791, 998, 1286
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	372, 743
HpyCH4V	TGCA	8 cut(s)	354, 482, 648, 685, 698, 855, 910, 969
HpyF10VI	GCNNNNNNNGC	7 cut(s)	265, 396, 479, 695, 833, 904, 1195
HpyF3I	CTNAG	4 cut(s)	61, 507, 624, 891
HpySE526I	ACGT	2 cut(s)	372, 743
Hsp92II	CATG	4 cut(s)	289, 664, 841, 1285
HspAI	GCGC	2 cut(s)	234, 1187
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	203, 434, 1303
LmnI	GCTCC	4 cut(s)	229, 446, 455, 800
Lsp1109I	GCAGC	7 cut(s)	457, 815, 867, 891, 894, 942, 1113
LweI	GCATC	3 cut(s)	245, 856, 1145
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	2 cut(s)	372, 743
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	3 cut(s)	205, 436, 1305
MboI	GATC	3 cut(s)	203, 434, 1303
MboII	GAAGA	6 cut(s)	347, 533, 1061, 1229, 1239, 1244
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	4 cut(s)	372, 427, 618, 660
MluCI	AATT	6 cut(s)	484, 545, 581, 680, 1035, 1171
MlyI	GAGTC	5 cut(s)	8, 59, 171, 1250, 1253
MmeI	TCCRAC	1 cut(s)	693
MroNI	GCCGGC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	1175
MseI	TTAA	3 cut(s)	498, 531, 1318
MspA1I	CMGCKG	2 cut(s)	259, 933
MspI	CCGG	8 cut(s)	171, 310, 359, 503, 654, 1195, 1275, 1287
MspR9I	CCNGG	3 cut(s)	359, 360, 655
Mva1269I	GAATGC	3 cut(s)	174, 201, 415
MvnI	CGCG	2 cut(s)	1187, 1189
MwoI	GCNNNNNNNGC	7 cut(s)	265, 396, 479, 695, 833, 904, 1195
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	3 cut(s)	359, 360, 655
NdeII	GATC	3 cut(s)	203, 434, 1303
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	4 cut(s)	289, 664, 841, 1285
NlaIV	GGNNCC	2 cut(s)	280, 1279
NmeAIII	GCCGAG	2 cut(s)	165, 978
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	2 cut(s)	488, 1086
PaeI	GCATGC	1 cut(s)	289
PagI	TCATGA	1 cut(s)	660
PctI	GAATGC	3 cut(s)	174, 201, 415
PdiI	GCCGGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	1175
PfeI	GAWTC	3 cut(s)	338, 461, 1066
PflMI	CCANNNNNTGG	3 cut(s)	91, 757, 1040
PinAI	ACCGGT	1 cut(s)	309
PleI	GAGTC	5 cut(s)	8, 59, 170, 1250, 1252
PpsI	GAGTC	5 cut(s)	8, 59, 170, 1250, 1252
Ppu21I	YACGTR	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	280, 1279
PsrI	GAACNNNNNNTAC	2 cut(s)	201, 233
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	7 cut(s)	139, 308, 314, 386, 587, 746, 1226
RsaNI	GTAC	7 cut(s)	138, 307, 313, 385, 586, 745, 1225
SaqAI	TTAA	3 cut(s)	498, 531, 1318
Sau3AI	GATC	3 cut(s)	203, 434, 1303
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	5 cut(s)	8, 59, 171, 1250, 1253
ScrFI	CCNGG	3 cut(s)	359, 360, 655
SduI	GDGCHC	4 cut(s)	372, 427, 618, 660
SfaNI	GCATC	3 cut(s)	245, 856, 1145
SfuI	TTCGAA	2 cut(s)	488, 1086
SmaI	CCCGGG	1 cut(s)	360
SmlI	CTYRAG	3 cut(s)	34, 830, 859
SmoI	CTYRAG	3 cut(s)	34, 830, 859
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	6 cut(s)	484, 545, 581, 680, 1035, 1171
SsiI	CCGC	9 cut(s)	119, 259, 283, 399, 540, 598, 606, 933, 1272
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	357, 358, 653
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	375, 746
TaqI	TCGA	2 cut(s)	488, 1086
TasI	AATT	6 cut(s)	484, 545, 581, 680, 1035, 1171
TatI	WGTACW	2 cut(s)	384, 1224
TauI	GCSGC	4 cut(s)	262, 402, 601, 1274
TfiI	GAWTC	3 cut(s)	338, 461, 1066
Tru1I	TTAA	3 cut(s)	498, 531, 1318
Tru9I	TTAA	3 cut(s)	498, 531, 1318
TscAI	CASTG	3 cut(s)	246, 432, 895
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	7 cut(s)	470, 803, 855, 904, 907, 930, 1126
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	5 cut(s)	43, 114, 677, 1134, 1168
TspGWI	ACGGA	2 cut(s)	454, 603
TspMI	CCCGGG	1 cut(s)	358
TspRI	CASTG	3 cut(s)	246, 432, 895
Van91I	CCANNNNNTGG	3 cut(s)	91, 757, 1040
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	289
XmaI	CCCGGG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	1175
XspI	CTAG	1 cut(s)	690
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.