Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001288.1

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Reverse (-)

27707 .. 28148

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001288.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgtccaggcactttggcagcttaagggatgcaataatgtcatatatatccagaaaagcgaaagttgatgcaagattttccgaaagtgagacagtgttagacagaagagaatgtcccttcaacagcttgggattatccatggccaaaggcaagcagcttggagaccaattagagggctgcctgagaacttggcttttcaaacactttcttcatccttatccttatgactctgagaagctaatgttggcatcacaaacaggcctgtccaagaaccaagtaatacttcgtaacagttttgtctacgtcctgatttcatcactttcttataacctggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

112

Amino Acids

12.84

Weight (kDa)

9.43

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	121, 199
AjnI	CCWGG	2 cut(s)	5, 330
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 259, 267, 299
AluBI	AGCT	4 cut(s)	21, 126, 157, 238
AluI	AGCT	4 cut(s)	21, 126, 157, 238
Alw26I	GTCTC	2 cut(s)	83, 156
AoxI	GGCC	2 cut(s)	141, 259
ApeKI	GCWGC	3 cut(s)	18, 154, 177
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	30, 164, 166
BciT130I	CCWGG	2 cut(s)	7, 332
BcoDI	GTCTC	2 cut(s)	83, 156
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	19, 155, 178
BlsI	GCNGC	3 cut(s)	20, 156, 179
Bme1390I	CCNGG	2 cut(s)	7, 332
BmrFI	CCNGG	2 cut(s)	7, 332
BmsI	GCATC	3 cut(s)	19, 58, 257
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	7, 332
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	34, 211
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	173, 222
BseXI	GCAGC	3 cut(s)	30, 164, 166
BshFI	GGCC	2 cut(s)	143, 261
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	83, 156
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	143, 261
Bso31I	GGTCTC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	2 cut(s)	143, 261
BspCNI	CTCAG	2 cut(s)	174, 223
BspTI	CTTAAG	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	7, 332
Bst4CI	ACNGT	2 cut(s)	94, 293
Bst6I	CTCTTC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	182, 231
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	34, 211
BstMAI	GTCTC	2 cut(s)	83, 156
BstNI	CCWGG	2 cut(s)	7, 332
BstSCI	CCNGG	2 cut(s)	5, 330
BstV1I	GCAGC	3 cut(s)	30, 164, 166
BsuRI	GGCC	2 cut(s)	143, 261
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	34, 211
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	152
CsiI	ACCWGGT	1 cut(s)	330
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	8 cut(s)	21, 126, 143, 157, 177, 193, 238, 261
CviKI_1	RGCY	8 cut(s)	21, 126, 143, 157, 177, 193, 238, 261
DdeI	CTNAG	2 cut(s)	182, 231
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	5, 330
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	142
FaiI	YATR	6 cut(s)	43, 45, 47, 140, 225, 327
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	19, 155, 178
FokI	GGATG	2 cut(s)	41, 198
Fsp4HI	GCNGC	3 cut(s)	19, 155, 178
GluI	GCNGC	3 cut(s)	19, 155, 178
HaeIII	GGCC	2 cut(s)	143, 261
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	82, 232
Hpy188III	TCNNGA	2 cut(s)	51, 307
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	94, 293
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	32, 71
HpyF3I	CTNAG	2 cut(s)	182, 231
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	142
LpnPI	CCDG	7 cut(s)	19, 64, 194, 243, 275, 317, 320
Lsp1109I	GCAGC	3 cut(s)	30, 164, 166
LweI	GCATC	3 cut(s)	19, 58, 257
MabI	ACCWGGT	1 cut(s)	330
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	117, 200
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	1 cut(s)	166
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	7, 332
MvaI	CCWGG	2 cut(s)	7, 332
NcoI	CCATGG	1 cut(s)	138
NlaIII	CATG	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	20, 156, 179
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	5, 330
PspGI	CCWGG	2 cut(s)	5, 330
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	19, 155, 178
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	7, 332
SetI	ASST	6 cut(s)	23, 128, 159, 240, 306, 333
SexAI	ACCWGGT	1 cut(s)	330
SfaNI	GCATC	3 cut(s)	19, 58, 257
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	167
SseBI	AGGCCT	1 cut(s)	261
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	5, 330
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	94, 293
TaiI	ACGT	1 cut(s)	306
TasI	AATT	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	3 cut(s)	18, 154, 177
TspDTI	ATGAA	2 cut(s)	200, 303
TspRI	CASTG	1 cut(s)	99
Vha464I	CTTAAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.