FvH4_2g39270

BEL1-like homeodomain protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28248654 .. 28251819
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39270.t2

Sequence Viewer

Length: 1269 bp
ATGGTTTCACAAGATTCACCCCCTAACCAAGCCTCAGGTATTCTCCACCAATTCATTGTCTCAGACTCCATGGCAGCTCAACACCACATGGAAAACCAACACCAGCTTGATGCTGCTTACTCCAATTTTCGAACCAGCACAAGCACATACCCTGGTCAACTTCCCAGCATTCATTCTCTTGAGGAGAGAATGTCTAGATCACTAGACCTTCTTCATGCTCCTCCAACAGCAGAGGGATCAGATCATATGAGCCACACAAGGCTTCTAATGGACCAGCACCAAGCTCTCTCACTGTCCCTTGGCTCACAGATGCTGCTTCCTCATAATTCTCATTCTGCTCATTATGTAAGCGATGACTATTCGTTCATGGGGAATGCGCTTGCTTCGTCTTCAAACTCACTGAATCAGCAGTCTTTGGGAGCTGTCATTGGGAATTCAAGATATCTGAAGCCAGCTCAGTCACTGTTAGAGGAGCTAGTTAGTGTTGGTGGGAAGTCAGTTGATATCAGCACTGAAAAACATGTAGGGAAGGTGTATGGTGGAGGGAGGAGAGGTTCTATGAGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTCATGTCAGCTGACAAACATGAATTCCAAACGAAAATTGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGAAGTGAGAAGTACTATCATCAAATGGAAGAAGTGATGCAATCATTTGAGATGGTAGTGGGTGCAGGAGCAGCGAAGTCTTACACAGCTCTGGCTCTCAAGGCAATGTCTAGGCACTTTGGCAGCTTAAGGGATGCTATAATGTCACACATAAATGCAGAAAAGCGGAAGTTGATGCAAGATTTTCCGAAAGTGAGCAGCGGACTAGCGCAACTAAGCTTGTATGATCGAGAGTGTAGACAGAAGAGAATGTCTCTTCAACAGCTTGGGATTATCCATGGCCAAAGGCAAGGTGCTTGGAGACCAATTAGAGGGCTGCCTGAGACCTCGGTGGCAATTCTTCGCACTTGGCTTTTCGAACACTTTCTTCATCCTTATCCAAATGACTCTGAGAAGCTAATGTTGGCATCACAAACAGGCCTGTCCAAGAACCAAGTTTCAAATTGGTTCATAAATGCTCGGGTTCGACTTTGGAAACCTATGATAGAGGAAATGTACAAAGAAGAATTTGCAGATTCTTCACAAGACTCCAATCCAGTAGCTAGTGGTTCCATGACCGGTGAAAGCAACACAGATCACACAGATGATTAA

Protein Analysis

423

Amino Acids

46.97

Weight (kDa)

6.15

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 119 - 251 4.6e-37 Associated with HOX
Homeobox_KN PF05920 320 - 359 5.9e-19 Homeobox KN domain
Homeodomain PF00046 327 - 359 3.3e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 916
AciI CCGC 2 cut(s) 844, 879
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 3 cut(s) 433, 626, 1184
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 2 cut(s) 692, 1175
AfiI CCNNNNNNNGG 1 cut(s) 989
AflII CTTAAG 1 cut(s) 805
AflIII ACRYGT 1 cut(s) 520
AgeI ACCGGT 1 cut(s) 1235
AgsI TTSAA 5 cut(s) 393, 438, 580, 938, 1119
AjnI CCWGG 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 1064, 1096
AloI GAACNNNNNNTCC 2 cut(s) 538, 570
Alw26I GTCTC 4 cut(s) 64, 936, 973, 995
AlwI GGATC 1 cut(s) 244
AlwNI CAGNNNCTG 2 cut(s) 313, 463
Ama87I CYCGRG 1 cut(s) 1137
AoxI GGCC 3 cut(s) 601, 958, 1096
ApeKI GCWGC 8 cut(s) 74, 113, 313, 594, 749, 801, 876, 994
ApoI RAATTY 3 cut(s) 433, 626, 1184
AsiGI ACCGGT 1 cut(s) 1235
Asp700I GAANNNNTTC 1 cut(s) 1041
AspLEI GCGC 2 cut(s) 379, 889
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 9, 646, 1250
AsuII TTCGAA 2 cut(s) 130, 1035
AvaI CYCGRG 1 cut(s) 1137
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 34
BalI TGGCCA 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 8 cut(s) 86, 100, 300, 581, 761, 813, 888, 981
BccI CCATC 1 cut(s) 724
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 4 cut(s) 64, 936, 973, 995
BfaI CTAG 6 cut(s) 195, 203, 476, 789, 884, 1221
BfrI CTTAAG 1 cut(s) 805
BisI GCNGC 8 cut(s) 75, 114, 314, 595, 750, 802, 877, 995
BlsI GCNGC 8 cut(s) 76, 115, 315, 596, 751, 803, 878, 996
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 1137
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 1228
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 6 cut(s) 100, 300, 705, 802, 843, 1094
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 916, 948
Bpu14I TTCGAA 2 cut(s) 130, 1035
BpuEI CTTGAG 2 cut(s) 200, 761
BsaI GGTCTC 2 cut(s) 973, 995
BsaJI CCNNGG 5 cut(s) 69, 151, 298, 955, 1005
BsaWI WCCGGW 1 cut(s) 1235
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 538, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse118I RCCGGY 1 cut(s) 1235
Bse1I ACTGG 1 cut(s) 1214
Bse21I CCTNAGG 1 cut(s) 34
Bse3DI GCAATG 2 cut(s) 604, 789
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 5 cut(s) 69, 151, 298, 955, 1005
BseGI GGATG 2 cut(s) 817, 1048
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMI GCAATG 2 cut(s) 604, 789
BseMII CTCAG 5 cut(s) 48, 75, 470, 990, 1059
BseNI ACTGG 1 cut(s) 1214
BseRI GAGGAG 4 cut(s) 197, 210, 485, 562
BseXI GCAGC 8 cut(s) 86, 100, 300, 581, 761, 813, 888, 981
BseYI CCCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 3 cut(s) 603, 960, 1098
BshTI ACCGGT 1 cut(s) 1235
BsiHKCI CYCGRG 1 cut(s) 1137
BsiSI CCGG 1 cut(s) 1236
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 4 cut(s) 64, 936, 973, 995
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 2 cut(s) 168, 379
BsnI GGCC 3 cut(s) 603, 960, 1098
Bso31I GGTCTC 2 cut(s) 973, 995
BsoBI CYCGRG 1 cut(s) 1137
Bsp119I TTCGAA 2 cut(s) 130, 1035
Bsp1407I TGTACA 1 cut(s) 1173
Bsp143I GATC 5 cut(s) 197, 236, 241, 904, 1252
Bsp19I CCATGG 2 cut(s) 69, 955
BspACI CCGC 2 cut(s) 844, 879
BspANI GGCC 3 cut(s) 603, 960, 1098
BspCNI CTCAG 5 cut(s) 47, 74, 469, 991, 1060
BspLI GGNNCC 1 cut(s) 1228
BspPI GGATC 1 cut(s) 244
BspT104I TTCGAA 2 cut(s) 130, 1035
BspTI CTTAAG 1 cut(s) 805
BspTNI GGTCTC 2 cut(s) 973, 995
BsrDI GCAATG 2 cut(s) 604, 789
BsrFI RCCGGY 1 cut(s) 1235
BsrGI TGTACA 1 cut(s) 1173
BsrI ACTGG 1 cut(s) 1214
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 5 cut(s) 69, 151, 298, 955, 1005
BssMI GATC 5 cut(s) 197, 236, 241, 904, 1252
BssT1I CCWWGG 3 cut(s) 69, 298, 955
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 294, 465
Bst6I CTCTTC 3 cut(s) 660, 917, 939
BstAFI CTTAAG 1 cut(s) 805
BstAUI TGTACA 1 cut(s) 1173
BstBI TTCGAA 2 cut(s) 130, 1035
BstC8I GCNNGC 2 cut(s) 381, 453
BstDEI CTNAG 6 cut(s) 34, 61, 456, 893, 999, 1068
BstDSI CCRYGG 2 cut(s) 69, 955
BstF5I GGATG 2 cut(s) 817, 1048
BstHHI GCGC 2 cut(s) 379, 889
BstKTI GATC 5 cut(s) 200, 239, 244, 907, 1255
BstMAI GTCTC 4 cut(s) 64, 936, 973, 995
BstMBI GATC 5 cut(s) 197, 236, 241, 904, 1252
BstMWI GCNNNNNNNGC 3 cut(s) 600, 749, 779
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 8 cut(s) 86, 100, 300, 581, 761, 813, 888, 981
BstV2I GAAGAC 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 34
BsuRI GGCC 3 cut(s) 603, 960, 1098
BtgI CCRYGG 2 cut(s) 69, 955
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 817, 1048
BtsIMutI CAGTG 4 cut(s) 290, 398, 461, 510
Cac8I GCNNGC 2 cut(s) 381, 453
CaiI CAGNNNCTG 2 cut(s) 313, 463
CfoI GCGC 2 cut(s) 379, 889
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 691, 1174
CspAI ACCGGT 1 cut(s) 1235
CviAII CATG 9 cut(s) 70, 88, 215, 367, 521, 607, 623, 956, 1231
CviQI GTAC 2 cut(s) 691, 1174
DdeI CTNAG 6 cut(s) 34, 61, 456, 893, 999, 1068
DpnI GATC 5 cut(s) 199, 238, 243, 906, 1254
DpnII GATC 5 cut(s) 197, 236, 241, 904, 1252
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 3 cut(s) 660, 917, 939
EarI CTCTTC 3 cut(s) 660, 917, 939
Eco130I CCWWGG 3 cut(s) 69, 298, 955
Eco147I AGGCCT 1 cut(s) 1098
Eco31I GGTCTC 2 cut(s) 973, 995
Eco32I GATATC 2 cut(s) 443, 505
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 467
Eco81I CCTNAGG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 1137
EcoRI GAATTC 2 cut(s) 433, 626
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 2 cut(s) 443, 505
EcoT14I CCWWGG 3 cut(s) 69, 298, 955
ErhI CCWWGG 3 cut(s) 69, 298, 955
FaeI CATG 9 cut(s) 73, 91, 218, 370, 524, 610, 626, 959, 1234
FaqI GGGAC 1 cut(s) 280
FatI CATG 9 cut(s) 69, 87, 214, 366, 520, 606, 622, 955, 1230
FauNDI CATATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 916
Fnu4HI GCNGC 8 cut(s) 75, 114, 314, 595, 750, 802, 877, 995
FokI GGATG 2 cut(s) 824, 1035
Fsp4HI GCNGC 8 cut(s) 75, 114, 314, 595, 750, 802, 877, 995
FspBI CTAG 6 cut(s) 195, 203, 476, 789, 884, 1221
GlaI GCGC 2 cut(s) 378, 888
GluI GCNGC 8 cut(s) 75, 114, 314, 595, 750, 802, 877, 995
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 603, 960, 1098
HapII CCGG 1 cut(s) 1236
HhaI GCGC 2 cut(s) 379, 889
Hin1II CATG 9 cut(s) 73, 91, 218, 370, 524, 610, 626, 959, 1234
Hin6I GCGC 2 cut(s) 377, 887
HinP1I GCGC 2 cut(s) 377, 887
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 6 cut(s) 14, 65, 403, 1064, 1193, 1205
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 3 cut(s) 9, 646, 1250
Hpy166II GTNNAC 2 cut(s) 158, 917
Hpy188I TCNGA 6 cut(s) 64, 241, 447, 574, 867, 1069
Hpy188III TCNNGA 4 cut(s) 179, 195, 438, 908
Hpy8I GTNNAC 2 cut(s) 158, 917
HpyAV CCTTC 2 cut(s) 218, 523
HpyCH4III ACNGT 2 cut(s) 294, 465
HpyCH4V TGCA 7 cut(s) 597, 644, 718, 743, 836, 856, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 600, 749, 779
HpyF3I CTNAG 6 cut(s) 34, 61, 456, 893, 999, 1068
Hsp92II CATG 9 cut(s) 73, 91, 218, 370, 524, 610, 626, 959, 1234
HspAI GCGC 2 cut(s) 377, 887
Kzo9I GATC 5 cut(s) 197, 236, 241, 904, 1252
LmnI GCTCC 4 cut(s) 223, 419, 472, 746
Lsp1109I GCAGC 8 cut(s) 86, 100, 300, 581, 761, 813, 888, 981
LweI GCATC 6 cut(s) 100, 300, 705, 802, 843, 1094
MaeI CTAG 6 cut(s) 195, 203, 476, 789, 884, 1221
MaeIII GTNAC 2 cut(s) 459, 822
MalI GATC 5 cut(s) 199, 238, 243, 906, 1254
MboI GATC 5 cut(s) 197, 236, 241, 904, 1252
MlsI TGGCCA 1 cut(s) 960
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 3 cut(s) 59, 1058, 1199
MmeI TCCRAC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 960
MseI TTAA 2 cut(s) 806, 1267
MslI CAYNNNNRTG 2 cut(s) 831, 1260
Msp20I TGGCCA 1 cut(s) 960
MspA1I CMGCKG 2 cut(s) 614, 879
MspCI CTTAAG 1 cut(s) 805
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 2 cut(s) 168, 379
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 600, 749, 779
NcoI CCATGG 2 cut(s) 69, 955
NdeI CATATG 1 cut(s) 246
NdeII GATC 5 cut(s) 197, 236, 241, 904, 1252
NlaIII CATG 9 cut(s) 73, 91, 218, 370, 524, 610, 626, 959, 1234
NlaIV GGNNCC 1 cut(s) 1228
NmuCI GTSAC 2 cut(s) 459, 822
NspI RCATGY 1 cut(s) 524
NspV TTCGAA 2 cut(s) 130, 1035
PceI AGGCCT 1 cut(s) 1098
PciI ACATGT 1 cut(s) 520
PctI GAATGC 2 cut(s) 168, 379
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 3 cut(s) 14, 403, 1193
PinAI ACCGGT 1 cut(s) 1235
PkrI GCNGC 8 cut(s) 76, 115, 315, 596, 751, 803, 878, 996
PleI GAGTC 3 cut(s) 59, 1058, 1199
PpsI GAGTC 3 cut(s) 59, 1058, 1199
PscI ACATGT 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 1228
PspPI GGNCC 1 cut(s) 271
PstNI CAGNNNCTG 2 cut(s) 313, 463
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 692, 1175
RsaNI GTAC 2 cut(s) 691, 1174
RseI CAYNNNNRTG 2 cut(s) 831, 1260
SaqAI TTAA 2 cut(s) 806, 1267
SatI GCNGC 8 cut(s) 75, 114, 314, 595, 750, 802, 877, 995
Sau3AI GATC 5 cut(s) 197, 236, 241, 904, 1252
Sau96I GGNCC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 692
SchI GAGTC 3 cut(s) 59, 1058, 1199
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 6 cut(s) 100, 300, 705, 802, 843, 1094
SfuI TTCGAA 2 cut(s) 130, 1035
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 831, 1260
SmlI CTYRAG 3 cut(s) 179, 776, 805
SmoI CTYRAG 3 cut(s) 179, 776, 805
SseBI AGGCCT 1 cut(s) 1098
SsiI CCGC 2 cut(s) 844, 879
SspMI CTAG 6 cut(s) 195, 203, 476, 789, 884, 1221
StuI AGGCCT 1 cut(s) 1098
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 3 cut(s) 69, 298, 955
TaaI ACNGT 2 cut(s) 294, 465
TaqI TCGA 4 cut(s) 130, 907, 1035, 1144
TatI WGTACW 2 cut(s) 690, 1173
TfiI GAWTC 3 cut(s) 14, 403, 1193
Tru1I TTAA 2 cut(s) 806, 1267
Tru9I TTAA 2 cut(s) 806, 1267
TscAI CASTG 4 cut(s) 297, 405, 468, 517
TseFI GTSAC 2 cut(s) 459, 822
TseI GCWGC 8 cut(s) 74, 113, 313, 594, 749, 801, 876, 994
Tsp45I GTSAC 2 cut(s) 459, 822
TspDTI ATGAA 7 cut(s) 43, 161, 203, 355, 639, 1037, 1117
TspRI CASTG 4 cut(s) 297, 405, 468, 517
Vha464I CTTAAG 1 cut(s) 805
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 433, 626, 1184
XbaI TCTAGA 1 cut(s) 194
XceI RCATGY 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 916
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 6 cut(s) 195, 203, 476, 789, 884, 1221
ZrmI AGTACT 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.