Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002935

Physical Location & Seq

Genomic Coordinates Forward (+)

46038181 .. 46038567

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0308600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATGGTCACACCAACGTGCCTGGTCCTGCGACTCCTACTAGTGGTCTTGCTGCAACCATAAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTTGTTTTAATGGAGTCGAAGCAGAAGGGTATCCCCCCTCCCGGTGGACCTAATCCGCCCACCAACACGCCTGGTCATAAGCCTCGTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

128

Amino Acids

13.39

Weight (kDa)

9.87

Isoelectric Point (pI)

21.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75430 AT1G75430
fragaria_vesca	FvH4_2g39270 FvH4_2g39270 FvH4_2g39270
malus_domestica	MD08G1024300.v1.1 MD15G1021900.v1.1
prunus_persica	Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1 Prupe.1G373700_v2.0.a1
pyrus_communis	pycom08g01910 pycom15g01820
rosa_chinensis	RchiOBHm_Chr6g0245211 RchiOBHm_Chr6g0301741
rosa_laevigata	RLG00000011226 RLG00000015315 RLG00000021395
rosa_multiflora	Rmu_sc0001288.1_g000006 Rmu_sc0005454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242160 Rroxscaffold_7G00166460 Rroxscaffold_7G00215350
rosa_rugosa	Rorug05G0512900 Rorug05G0512900 Rorug06G0308600 Rorug06G0308700.1 Rorug06G0308800.1 Rorug06G0308900.1
rosa_samantha	Rh6AG028000 Rh6AG028100 Rh6AG421100 Rh6BG024200 Rh6BG427800 Rh6CG434400 Rh6DG421300
rosa_wichuraiana	Rw6G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AciI	CCGC	1 cut(s)	314
AfiI	CCNNNNNNNGG	4 cut(s)	134, 182, 299, 302
AgsI	TTSAA	1 cut(s)	366
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	160, 328
AleI	CACNNNNGTG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	191, 359
AspS9I	GGNCC	3 cut(s)	137, 164, 305
AsuC2I	CCSGG	2 cut(s)	132, 300
AvaII	GGWCC	3 cut(s)	137, 164, 305
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	178, 346
BciT130I	CCWGG	2 cut(s)	162, 330
BciVI	GTATCC	1 cut(s)	299
BcnI	CCSGG	2 cut(s)	132, 300
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	180, 348
BfmI	CTRYAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	192, 360
BlsI	GCNGC	2 cut(s)	193, 361
Bme1390I	CCNGG	4 cut(s)	132, 162, 300, 330
Bme18I	GGWCC	3 cut(s)	137, 164, 305
BmgT120I	GGNCC	3 cut(s)	137, 164, 305
BmrFI	CCNGG	4 cut(s)	132, 162, 300, 330
BpuMI	CCSGG	2 cut(s)	132, 300
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 182, 299, 302
BseBI	CCWGG	2 cut(s)	162, 330
BseLI	CCNNNNNNNGG	4 cut(s)	134, 182, 299, 302
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	178, 346
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	132, 300
BslI	CCNNNNNNNGG	4 cut(s)	134, 182, 299, 302
BsnI	GGCC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	162, 330
Bst4CI	ACNGT	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	59, 76, 220
BstDEI	CTNAG	1 cut(s)	69
BstNI	CCWGG	2 cut(s)	162, 330
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	130, 160, 298, 328
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	178, 346
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	59, 76, 220
Cfr13I	GGNCC	3 cut(s)	137, 164, 305
CviAII	CATG	3 cut(s)	58, 89, 356
CviJI	RGCY	4 cut(s)	74, 119, 222, 340
CviKI_1	RGCY	4 cut(s)	74, 119, 222, 340
DdeI	CTNAG	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	137, 164, 305
EcoRII	CCWGG	2 cut(s)	160, 328
FaeI	CATG	3 cut(s)	61, 92, 359
FaiI	YATR	6 cut(s)	53, 59, 90, 200, 336, 357
FatI	CATG	3 cut(s)	57, 88, 355
Fnu4HI	GCNGC	2 cut(s)	192, 360
Fsp4HI	GCNGC	2 cut(s)	192, 360
FspBI	CTAG	2 cut(s)	180, 348
GluI	GCNGC	2 cut(s)	192, 360
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	132, 300
Hin1II	CATG	3 cut(s)	61, 92, 359
HinfI	GANTC	2 cut(s)	172, 272
HpaII	CCGG	2 cut(s)	132, 300
Hpy166II	GTNNAC	2 cut(s)	137, 305
Hpy188I	TCNGA	2 cut(s)	23, 70
Hpy8I	GTNNAC	2 cut(s)	137, 305
HpyAV	CCTTC	2 cut(s)	109, 277
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	61, 88, 194, 218
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	61, 92, 359
Lsp1109I	GCAGC	2 cut(s)	178, 346
MaeI	CTAG	2 cut(s)	180, 348
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	25, 146
MboII	GAAGA	3 cut(s)	116, 124, 259
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 382
MlyI	GAGTC	2 cut(s)	166, 281
MnlI	CCTC	5 cut(s)	64, 88, 138, 306, 351
MseI	TTAA	4 cut(s)	12, 266, 372, 385
MslI	CAYNNNNRTG	2 cut(s)	56, 155
MspI	CCGG	2 cut(s)	132, 300
MspR9I	CCNGG	4 cut(s)	132, 162, 300, 330
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	2 cut(s)	162, 330
NciI	CCSGG	2 cut(s)	132, 300
NlaIII	CATG	3 cut(s)	61, 92, 359
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	193, 361
PleI	GAGTC	2 cut(s)	166, 280
PpsI	GAGTC	2 cut(s)	166, 280
Psp6I	CCWGG	2 cut(s)	160, 328
PspGI	CCWGG	2 cut(s)	160, 328
PspPI	GGNCC	3 cut(s)	137, 164, 305
RseI	CAYNNNNRTG	2 cut(s)	56, 155
SaqAI	TTAA	4 cut(s)	12, 266, 372, 385
SatI	GCNGC	2 cut(s)	192, 360
Sau96I	GGNCC	3 cut(s)	137, 164, 305
SchI	GAGTC	2 cut(s)	166, 281
ScrFI	CCNGG	4 cut(s)	132, 162, 300, 330
SetI	ASST	3 cut(s)	142, 159, 310
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	3 cut(s)	137, 164, 305
SmiMI	CAYNNNNRTG	2 cut(s)	56, 155
SpeI	ACTAGT	1 cut(s)	179
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 382
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	2 cut(s)	180, 348
StyD4I	CCNGG	4 cut(s)	130, 160, 298, 328
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	62, 382
Tru1I	TTAA	4 cut(s)	12, 266, 372, 385
Tru9I	TTAA	4 cut(s)	12, 266, 372, 385
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	191, 359
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	3 cut(s)	137, 164, 305
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	2 cut(s)	180, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.