Rroxscaffold_3G00242160

BEL1-like homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002935
Physical Location & Seq
Forward (+)
34555966 .. 34556935
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242160.1

Sequence Viewer

Length: 864 bp
ATGGTTTCACAAGACTCACCCCCAAGCCAAGCCTCAAGTATTCTCCACCATTTCATTGTCTCAGACTCCATGGCAGCTCAAAACCACATGGAATACCAACACCAGCTTGATGCTGCTTACGCCTCTAATTTTCGAACCAGCACTAGCACATACCCTCAGTCTCTTGGTCAACTCCCCAGCATTCATTCCCTTGAGGAGAGAATGTCTAGATCACTAGACCTTCTTCATGCTCTTCTAATAGTCGCGGCAGAGGGAACGGATCATATGAGCCACACAAAGCTTCTAATGGACCTGCACCAAGCACTCTCACTGTCCCTTGGCTCACAGATGCTTCTTCCTCCTAGTTCTCATTCTGCTCATTATGTGACCGATGACTATTCGTTCATGGGGAATGCGCTTGCTTCGTCTTCAAGCTCACTGAATCTGCAGTCTTTGGCAGCAGTCATTGGGAATTCGAGATATCTAAAGCCAGCTCAGTCACTATTAGAAGAGATAGTTAGTGTTGGTGGAAAGGCAGTTGATATCAGCAGTGAAAAACATGTTGGGAAAATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCAAATGTCAGCTGAGAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAAAGGTTGAGGACAGATGTGAGAACTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTGGGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTTCAGGCACTTTGGCAGCTTAAGGGATGCAATCATATATATGCAGAAAAGCGAAAGTTGA

Protein Analysis

287

Amino Acids

31.35

Weight (kDa)

5.99

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 148 - 279 5.1e-37 Associated with HOX
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 721
AccII CGCG 1 cut(s) 245
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 2 cut(s) 451, 644
AfiI CCNNNNNNNGG 2 cut(s) 721, 807
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 3 cut(s) 411, 598, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 8 cut(s) 77, 106, 280, 414, 473, 632, 785, 822
AluI AGCT 8 cut(s) 77, 106, 280, 414, 473, 632, 785, 822
Alw26I GTCTC 2 cut(s) 64, 165
AlwI GGATC 1 cut(s) 267
AoxI GGCC 3 cut(s) 580, 619, 798
ApeKI GCWGC 6 cut(s) 74, 113, 437, 612, 767, 819
ApoI RAATTY 2 cut(s) 451, 644
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 289, 580
AsuHPI GGTGA 2 cut(s) 9, 664
AsuII TTCGAA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 6 cut(s) 86, 100, 449, 599, 779, 831
BccI CCATC 2 cut(s) 723, 742
BcoDI GTCTC 2 cut(s) 64, 165
BfaI CTAG 4 cut(s) 144, 207, 215, 342
BfmI CTRYAG 1 cut(s) 425
BfrI CTTAAG 1 cut(s) 823
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 7 cut(s) 75, 114, 246, 438, 613, 768, 820
BlsI GCNGC 7 cut(s) 76, 115, 247, 439, 614, 769, 821
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 289, 580
BmsI GCATC 3 cut(s) 100, 318, 820
BpiI GAAGAC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 133
BpuEI CTTGAG 3 cut(s) 19, 212, 779
BsaJI CCNNGG 2 cut(s) 69, 316
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 721, 807
Bse3DI GCAATG 1 cut(s) 622
BseDI CCNNGG 2 cut(s) 69, 316
BseGI GGATG 1 cut(s) 835
BseLI CCNNNNNNNGG 2 cut(s) 721, 807
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 4 cut(s) 75, 170, 488, 624
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 6 cut(s) 86, 100, 449, 599, 779, 831
BseYI CCCAGC 1 cut(s) 176
BsgI GTGCAG 2 cut(s) 278, 780
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 582, 621, 800
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 721, 807
BsmAI GTCTC 2 cut(s) 64, 165
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 2 cut(s) 180, 397
BsnI GGCC 3 cut(s) 582, 621, 800
Bsp119I TTCGAA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 209, 259
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 1 cut(s) 245
BspANI GGCC 3 cut(s) 582, 621, 800
BspCNI CTCAG 4 cut(s) 74, 169, 487, 625
BspFNI CGCG 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 133
BspTI CTTAAG 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 69, 316
BssMI GATC 2 cut(s) 209, 259
BssT1I CCWWGG 2 cut(s) 69, 316
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 237, 483
BstAFI CTTAAG 1 cut(s) 823
BstBI TTCGAA 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 399, 471
BstDEI CTNAG 4 cut(s) 61, 156, 474, 633
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 835
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 2 cut(s) 212, 262
BstMAI GTCTC 2 cut(s) 64, 165
BstMBI GATC 2 cut(s) 209, 259
BstMWI GCNNNNNNNGC 5 cut(s) 119, 579, 618, 767, 797
BstNSI RCATGY 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 425
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 6 cut(s) 86, 100, 449, 599, 779, 831
BstV2I GAAGAC 1 cut(s) 399
BsuRI GGCC 3 cut(s) 582, 621, 800
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 835
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 3 cut(s) 308, 416, 535
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 2 cut(s) 399, 471
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 289, 580
CviAII CATG 7 cut(s) 70, 88, 227, 385, 539, 641, 802
DdeI CTNAG 4 cut(s) 61, 156, 474, 633
DpnI GATC 2 cut(s) 211, 261
DpnII GATC 2 cut(s) 209, 259
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 237, 483
EarI CTCTTC 2 cut(s) 237, 483
Eco130I CCWWGG 2 cut(s) 69, 316
Eco32I GATATC 2 cut(s) 461, 523
Eco47I GGWCC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 451
EcoRV GATATC 2 cut(s) 461, 523
EcoT14I CCWWGG 2 cut(s) 69, 316
ErhI CCWWGG 2 cut(s) 69, 316
FaeI CATG 7 cut(s) 73, 91, 230, 388, 542, 644, 805
FaqI GGGAC 1 cut(s) 298
FatI CATG 7 cut(s) 69, 87, 226, 384, 538, 640, 801
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 7 cut(s) 75, 114, 246, 438, 613, 768, 820
FokI GGATG 1 cut(s) 842
Fsp4HI GCNGC 7 cut(s) 75, 114, 246, 438, 613, 768, 820
FspBI CTAG 4 cut(s) 144, 207, 215, 342
GlaI GCGC 1 cut(s) 396
GluI GCNGC 7 cut(s) 75, 114, 246, 438, 613, 768, 820
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 3 cut(s) 582, 621, 800
HhaI GCGC 1 cut(s) 397
Hin1II CATG 7 cut(s) 73, 91, 230, 388, 542, 644, 805
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 14, 65, 421
HphI GGTGA 2 cut(s) 9, 664
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 64, 592
Hpy188III TCNNGA 2 cut(s) 207, 456
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 295, 427, 615, 761, 833, 847
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 579, 618, 767, 797
HpyF3I CTNAG 4 cut(s) 61, 156, 474, 633
Hsp92II CATG 7 cut(s) 73, 91, 230, 388, 542, 644, 805
HspAI GCGC 1 cut(s) 395
Kzo9I GATC 2 cut(s) 209, 259
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 764
LpnPI CCDG 9 cut(s) 116, 151, 190, 305, 483, 665, 747, 773, 793
Lsp1109I GCAGC 6 cut(s) 86, 100, 449, 599, 779, 831
LweI GCATC 3 cut(s) 100, 318, 820
MaeI CTAG 4 cut(s) 144, 207, 215, 342
MaeIII GTNAC 2 cut(s) 364, 477
MalI GATC 2 cut(s) 211, 261
MboI GATC 2 cut(s) 209, 259
MboII GAAGA 7 cut(s) 215, 224, 326, 399, 500, 579, 737
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 4 cut(s) 127, 451, 593, 644
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 2 cut(s) 8, 59
Mox20I TGGCCA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 621
MseI TTAA 1 cut(s) 824
MslI CAYNNNNRTG 1 cut(s) 842
Msp20I TGGCCA 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 823
Mva1269I GAATGC 2 cut(s) 180, 397
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 5 cut(s) 119, 579, 618, 767, 797
NcoI CCATGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 264
NdeII GATC 2 cut(s) 209, 259
NlaIII CATG 7 cut(s) 73, 91, 230, 388, 542, 644, 805
NmuCI GTSAC 2 cut(s) 364, 477
NspI RCATGY 1 cut(s) 542
NspV TTCGAA 1 cut(s) 133
PciI ACATGT 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 2 cut(s) 180, 397
PfeI GAWTC 1 cut(s) 421
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 7 cut(s) 76, 115, 247, 439, 614, 769, 821
PleI GAGTC 2 cut(s) 8, 59
PpsI GAGTC 2 cut(s) 8, 59
PscI ACATGT 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 289, 580
PstI CTGCAG 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 632
RseI CAYNNNNRTG 1 cut(s) 842
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 824
SatI GCNGC 7 cut(s) 75, 114, 246, 438, 613, 768, 820
Sau3AI GATC 2 cut(s) 209, 259
Sau96I GGNCC 2 cut(s) 289, 580
SchI GAGTC 2 cut(s) 8, 59
SfaNI GCATC 3 cut(s) 100, 318, 820
SfcI CTRYAG 1 cut(s) 425
SfuI TTCGAA 1 cut(s) 133
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 4 cut(s) 34, 191, 794, 823
SmoI CTYRAG 4 cut(s) 34, 191, 794, 823
Sse9I AATT 4 cut(s) 127, 451, 593, 644
SsiI CCGC 1 cut(s) 245
SspMI CTAG 4 cut(s) 144, 207, 215, 342
StyI CCWWGG 2 cut(s) 69, 316
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 133, 455, 653
TaqII GACCGA 1 cut(s) 383
TasI AATT 4 cut(s) 127, 451, 593, 644
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 824
Tru9I TTAA 1 cut(s) 824
TscAI CASTG 3 cut(s) 315, 423, 535
TseFI GTSAC 2 cut(s) 364, 477
TseI GCWGC 6 cut(s) 74, 113, 437, 612, 767, 819
Tsp45I GTSAC 2 cut(s) 364, 477
TspDTI ATGAA 5 cut(s) 43, 173, 215, 373, 657
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 3 cut(s) 315, 423, 535
Van91I CCANNNNNTGG 1 cut(s) 721
Vha464I CTTAAG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 2 cut(s) 451, 644
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 542
XspI CTAG 4 cut(s) 144, 207, 215, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.