Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Forward (+)

28891976 .. 28893721

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAATCGTCTCCGGTAAACTGTCTTCCACCTGATTCTCTCCACCAGATCTTCTCATCTCTTCCTATTCGTGATATCATGATCTGCAGATCCGTCTGCAAGTTCTTCAACCAGCTTTTGACCTCTCAGTGTTTCATAGAGATTATCTCAACTCGTCCGCCGTTGAATCTACTCGCTCTCCGACCTCCTCATCACCACCACAGTCACCGTCACAGCGGAAACGGACACGCAACGAATATCCGACCGTACATCCATGTATATGATCCAGAGCAGAATCAATGGTTCAGATTCAATCTCGATTTCCTCCCTTTCCGATCTCCTCAGCCTGTAGCTTCTTCAAGCGGATTGATCTATCTTTGGGGAGATTCGATTGATTTAGCTGAATCTAGCAAATCGCTCGTCGCTTGTAATCCGTTAACTCGGCAGTTCAAGGTTTTGCCTCAGCTTGGCTCAGCTTGGTCACGCCATGGTACTGTTCTTGTTGATTCGGTGAATCGAGTCATGGTGCTCACTGAGCTCGCTGCGTTGTATTACTCAGGTACTGTAGTTGCTAACCAATGGCTCAAATTCTCGTCGAATTTACCATCGAAACCTAGAAGTCCTGTGTTAATGTCTAGCTCGGTTTTCGCATTGTGTGATGTTGGATCTCCATGGAGAAGTCAATGGAAGCTTTTCTCATGTAAATTGACGAATCTCACAATCACTCATACCAATTGGGTTTGCTTGGAGAAACATGAATGGGGTGATATATTCGATATCATCAAACGACCGCGTTTATTGCGCGGTAACGGTGATTCTAAGCTTCTTATGATCGGTGGATTGAAATCGACGTTTTCGTTGAACCCGGCTTGTTCAACGATTCTGATACTTAGGCTTGATCTAGAAAGCTTGGAGTGGGAAGAAGCAGGTAGAATGCCGTTAGAGATGTACCGAGGTTTTCAAGAATCGAGTAAGTTTAAAGTTTTTGGAGGTGGAGATAGGGTTTACTTCTCTGCTAAAAGGATGGGGAAGCTTGCAATGTGGGATTGTTGGCAAGGTTGGAGATGGATTGAGGGCGTCCCTGGTTATGCAGATGGATTGTGTCGAGGTTTTGTGTTTGATGCTAAGCTTACATTGATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

374

Amino Acids

42.49

Weight (kDa)

9.03

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 40	2.6e-07	F-box-like
F-box	PF00646	8 - 45	6.9e-09	F-box domain
Kelch_2	PF07646	256 - 306	8.3e-06	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	896
AccII	CGCG	2 cut(s)	772, 783
AciI	CCGC	5 cut(s)	158, 216, 342, 770, 783
AclWI	GGATC	3 cut(s)	84, 257, 652
AcsI	RAATTY	2 cut(s)	566, 577
AcyI	GRCGYC	1 cut(s)	1056
AfaI	GTAC	4 cut(s)	248, 472, 541, 929
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	9 cut(s)	109, 166, 292, 339, 430, 823, 841, 855, 941
AjnI	CCWGG	1 cut(s)	1060
Alw21I	GWGCWC	2 cut(s)	510, 519
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	3 cut(s)	84, 257, 652
AlwNI	CAGNNNCTG	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	566, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	783
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	5 cut(s)	185, 197, 502, 755, 803
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BanII	GRGCYC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	510, 519
BbvCI	CCTCAGC	2 cut(s)	321, 441
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	4 cut(s)	592, 997, 1038, 1067
BceAI	ACGGC	2 cut(s)	145, 901
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	1 cut(s)	1062
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	4 cut(s)	387, 594, 615, 881
BfmI	CTRYAG	3 cut(s)	85, 327, 543
BfuAI	ACCTGC	1 cut(s)	896
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	522
BlpI	GCTNAGC	2 cut(s)	451, 1104
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	845, 1062
BmrFI	CCNGG	2 cut(s)	845, 1062
BmsI	GCATC	2 cut(s)	1090, 1107
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bpu10I	CCTNAGC	2 cut(s)	321, 441
Bpu1102I	GCTNAGC	2 cut(s)	451, 1104
BpuMI	CCSGG	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	823
BsaHI	GRCGYC	1 cut(s)	1056
BsaJI	CCNNGG	4 cut(s)	466, 650, 931, 1060
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 966, 996
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	1023
Bse8I	GATNNNNATC	1 cut(s)	823
BseBI	CCWGG	1 cut(s)	1062
BseDI	CCNNGG	4 cut(s)	466, 650, 931, 1060
BseGI	GGATG	2 cut(s)	249, 1008
BseJI	GATNNNNATC	1 cut(s)	823
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	1023
BseMII	CTCAG	6 cut(s)	140, 335, 455, 465, 504, 549
BseRI	GAGGAG	2 cut(s)	177, 309
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	2 cut(s)	772, 783
Bsh1285I	CGRYCG	2 cut(s)	245, 770
BsiEI	CGRYCG	2 cut(s)	245, 770
BsiHKAI	GWGCWC	2 cut(s)	510, 519
BsiSI	CCGG	2 cut(s)	14, 845
BslFI	GGGAC	1 cut(s)	1043
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	1043
BsmI	GAATGC	1 cut(s)	918
Bsp1286I	GDGCHC	2 cut(s)	510, 519
Bsp143I	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
Bsp1720I	GCTNAGC	2 cut(s)	451, 1104
Bsp19I	CCATGG	2 cut(s)	466, 650
BspACI	CCGC	5 cut(s)	158, 216, 342, 770, 783
BspCNI	CTCAG	6 cut(s)	139, 334, 454, 464, 505, 548
BspFNI	CGCG	2 cut(s)	772, 783
BspHI	TCATGA	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	896
BspPI	GGATC	3 cut(s)	84, 257, 652
BsrDI	GCAATG	1 cut(s)	1023
BssECI	CCNNGG	4 cut(s)	466, 650, 931, 1060
BssMI	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
BssNI	GRCGYC	1 cut(s)	1056
BssT1I	CCWWGG	2 cut(s)	466, 650
Bst2UI	CCWGG	1 cut(s)	1062
Bst4CI	ACNGT	7 cut(s)	23, 203, 209, 246, 475, 544, 791
Bst6I	CTCTTC	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	1056
BstC8I	GCNNGC	2 cut(s)	519, 1014
BstDEI	CTNAG	9 cut(s)	126, 321, 441, 451, 513, 535, 798, 869, 1104
BstDSI	CCRYGG	2 cut(s)	466, 650
BstF5I	GGATG	2 cut(s)	249, 1008
BstFNI	CGCG	2 cut(s)	772, 783
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	9 cut(s)	51, 84, 92, 265, 317, 351, 647, 813, 880
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
BstMCI	CGRYCG	2 cut(s)	245, 770
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 778
BstNI	CCWGG	1 cut(s)	1062
BstSCI	CCNGG	2 cut(s)	843, 1060
BstSFI	CTRYAG	3 cut(s)	85, 327, 543
BstUI	CGCG	2 cut(s)	772, 783
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	3 cut(s)	48, 89, 644
BstYI	RGATCY	3 cut(s)	48, 89, 644
BtgI	CCRYGG	2 cut(s)	466, 650
BtsCI	GGATG	2 cut(s)	249, 1008
BtsIMutI	CAGTG	2 cut(s)	134, 510
BveI	ACCTGC	1 cut(s)	896
Cac8I	GCNNGC	2 cut(s)	519, 1014
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	783
CseI	GACGC	1 cut(s)	1045
Csp6I	GTAC	4 cut(s)	247, 471, 540, 928
CviAII	CATG	8 cut(s)	79, 254, 467, 502, 651, 678, 734, 1122
CviQI	GTAC	4 cut(s)	247, 471, 540, 928
DdeI	CTNAG	9 cut(s)	126, 321, 441, 451, 513, 535, 798, 869, 1104
DpnI	GATC	9 cut(s)	50, 83, 91, 264, 316, 350, 646, 812, 879
DpnII	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
DraI	TTTAAA	1 cut(s)	958
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	466, 650
Eco24I	GRGCYC	1 cut(s)	519
Eco32I	GATATC	2 cut(s)	76, 757
Eco53kI	GAGCTC	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	1060
EcoRV	GATATC	2 cut(s)	76, 757
EcoT14I	CCWWGG	2 cut(s)	466, 650
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	2 cut(s)	466, 650
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	8 cut(s)	82, 257, 470, 505, 654, 681, 737, 1125
FaqI	GGGAC	1 cut(s)	1043
FatI	CATG	8 cut(s)	78, 253, 466, 501, 650, 677, 733, 1121
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	2 cut(s)	236, 1015
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	4 cut(s)	387, 594, 615, 881
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	1 cut(s)	522
HapII	CCGG	2 cut(s)	14, 845
HgaI	GACGC	1 cut(s)	1045
HhaI	GCGC	1 cut(s)	783
Hin1I	GRCGYC	1 cut(s)	1056
Hin1II	CATG	8 cut(s)	82, 257, 470, 505, 654, 681, 737, 1125
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	5 cut(s)	668, 800, 886, 1010, 1106
HpaI	GTTAAC	1 cut(s)	417
HpaII	CCGG	2 cut(s)	14, 845
HphI	GGTGA	5 cut(s)	185, 197, 502, 755, 803
Hpy166II	GTNNAC	3 cut(s)	19, 417, 985
Hpy188I	TCNGA	5 cut(s)	182, 242, 287, 314, 864
Hpy188III	TCNNGA	6 cut(s)	71, 79, 266, 296, 881, 941
Hpy8I	GTNNAC	3 cut(s)	19, 417, 985
Hpy99I	CGWCG	3 cut(s)	404, 577, 832
HpyCH4III	ACNGT	7 cut(s)	23, 203, 209, 246, 475, 544, 791
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	4 cut(s)	87, 99, 1016, 1070
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 778
HpyF3I	CTNAG	9 cut(s)	126, 321, 441, 451, 513, 535, 798, 869, 1104
HpySE526I	ACGT	1 cut(s)	830
Hsp92I	GRCGYC	1 cut(s)	1056
Hsp92II	CATG	8 cut(s)	82, 257, 470, 505, 654, 681, 737, 1125
HspAI	GCGC	1 cut(s)	781
KspAI	GTTAAC	1 cut(s)	417
Kzo9I	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	2 cut(s)	1090, 1107
MaeI	CTAG	4 cut(s)	387, 594, 615, 881
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	4 cut(s)	203, 209, 459, 785
MalI	GATC	9 cut(s)	50, 83, 91, 264, 316, 350, 646, 812, 879
MboI	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
MboII	GAAGA	6 cut(s)	17, 43, 53, 97, 327, 911
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	3 cut(s)	48, 89, 644
MhlI	GDGCHC	2 cut(s)	510, 519
MluCI	AATT	4 cut(s)	566, 577, 683, 712
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	4 cut(s)	205, 265, 622, 1019
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	3 cut(s)	416, 608, 957
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	2 cut(s)	14, 845
MspR9I	CCNGG	2 cut(s)	845, 1062
MunI	CAATTG	1 cut(s)	712
Mva1269I	GAATGC	1 cut(s)	918
MvaI	CCWGG	1 cut(s)	1062
MvnI	CGCG	2 cut(s)	772, 783
MwoI	GCNNNNNNNGC	2 cut(s)	514, 778
NciI	CCSGG	1 cut(s)	845
NcoI	CCATGG	2 cut(s)	466, 650
NdeII	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
NlaIII	CATG	8 cut(s)	82, 257, 470, 505, 654, 681, 737, 1125
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	3 cut(s)	203, 209, 459
PagI	TCATGA	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	833
PctI	GAATGC	1 cut(s)	918
PdmI	GAANNNNTTC	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	523
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	1060
PspGI	CCWGG	1 cut(s)	1060
PstI	CTGCAG	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	3 cut(s)	48, 89, 644
RsaI	GTAC	4 cut(s)	248, 472, 541, 929
RsaNI	GTAC	4 cut(s)	247, 471, 540, 928
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	416, 608, 957
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	9 cut(s)	48, 81, 89, 262, 314, 348, 644, 810, 877
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	845, 1062
SduI	GDGCHC	2 cut(s)	510, 519
SfaNI	GCATC	2 cut(s)	1090, 1107
SfcI	CTRYAG	3 cut(s)	85, 327, 543
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	566, 577, 683, 712
SsiI	CCGC	5 cut(s)	158, 216, 342, 770, 783
SspMI	CTAG	4 cut(s)	387, 594, 615, 881
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	843, 1060
StyI	CCWWGG	2 cut(s)	466, 650
TaaI	ACNGT	7 cut(s)	23, 203, 209, 246, 475, 544, 791
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	9 cut(s)	297, 368, 496, 575, 587, 753, 827, 947, 1084
TasI	AATT	4 cut(s)	566, 577, 683, 712
Tru1I	TTAA	3 cut(s)	416, 608, 957
Tru9I	TTAA	3 cut(s)	416, 608, 957
TscAI	CASTG	2 cut(s)	134, 517
TseFI	GTSAC	3 cut(s)	203, 209, 459
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	3 cut(s)	203, 209, 459
TspDTI	ATGAA	2 cut(s)	124, 750
TspGWI	ACGGA	3 cut(s)	82, 237, 402
TspRI	CASTG	2 cut(s)	134, 517
XapI	RAATTY	2 cut(s)	566, 577
XbaI	TCTAGA	1 cut(s)	880
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	4 cut(s)	387, 594, 615, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.