Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000825.1

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Reverse (-)

85098 .. 85376

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000825.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgtggacaaggatcgagaagcaggagtggggggacgtgttcgacattttgaaacgacctcgtttgtttcgttgggaggaagagcttaatgattgggggggggggggggggttggagccctcgttttcgctgaactcggcgtgctcaacgattctgatactgaggttggatttggatagctgggagtggaacgaggcaggcaggataccggtggatatgattaagtgttttcaggagtgtagcaagcgcagtagcagaacccgaatacgagggcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

92

Amino Acids

10.85

Weight (kDa)

5.46

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	36
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	2 cut(s)	85, 180
AluI	AGCT	2 cut(s)	85, 180
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	249
BaeI	ACNNNNGTAYC	2 cut(s)	149, 182
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse118I	RCCGGY	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	180
BshTI	ACCGGT	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	120, 146
Bsp143I	GATC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	142, 199, 245
BstDEI	CTNAG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	142, 199, 245
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	208
CviJI	RGCY	3 cut(s)	85, 118, 180
CviKI_1	RGCY	3 cut(s)	85, 118, 180
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	248
GsaI	CCCAGC	1 cut(s)	184
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	16, 233
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	36
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	8, 166, 183, 187, 218, 222
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	120, 146
MmeI	TCCRAC	2 cut(s)	93, 147
MnlI	CCTC	6 cut(s)	69, 70, 130, 156, 187, 263
MseI	TTAA	2 cut(s)	87, 222
MspI	CCGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	12
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	87, 222
Sau3AI	GATC	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	120, 146
SetI	ASST	5 cut(s)	39, 61, 87, 167, 182
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	15, 42
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	87, 222
Tru9I	TTAA	2 cut(s)	87, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.