Rh6BG215800

SKP1-interacting partner

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
40734143 .. 40735688
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG215800.1

Sequence Viewer

Length: 1080 bp
ATGGAGTCTCTCCCACAAGACTCCCTCCACCACATCTTCTCCCTCCTCCCCCTCCCTCAGATCATGATCTGCCGCTCCGTCAGCAAGCACCTCCACCAAGTCCTCACCTCCCCCTCCTTCATCCACCTCATCTCCACCCACTCTCCTCCCCTCCGCCTCCTCGCCCTCCGCCCTCCCCACCACCGCCACCACCACCTCTCCTCCCCTCCCTCCCTCCACGTCTTCGACCCCGACCTCCGCCGCTGGCTCCGCTTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCCGGCCTCCTCTACCTCTGGGCCGACTCCCCCGACTCCACCAAGTCCCTCGTCGTCTGCAACCCTCTCACCCGCCGCTTCCTCACCTTGCCTCAGCTCGGCTCCGCCTGGTCAAGGCACGGCTCCGTCCTCGTTGACTCCGCCACCCGCGTCATGGTCCTCACCGAGCTCGCCGCGCTTTACTTCTCCGGCGGCGCCGGCAACCGCTGGCTCAAATTCTCTTCCAATCTTCCGTCCAAGCCCCGCAGCCCGATCCTCGTGGCCGACTCGGTCTTCGCGCTCTGCGACGTCGGCTCGCCGTGGAGGAGCCAGTGGAAGCTCTTCGCGTGCACCATTTCGAAGCTGAGGAGCTCGCAGACGTGGACGAGGCTCGAGAAGCAGGAGTGGGGGGACGTGTTCGACATTTTGAAACGGCCTCGTTTGGTTCGCGGGAATGGGAGCAAGATCTTGATGGTTGGGGGGTTGAAGTCCTCCTTCTCGCTGAACTCGGCGTGCTCGACGATTCTGATACTGAGGCTGGATTTGGATAGCTGGGAGTGGGACGAGGCGGGCCGAATGCCGGTGGATATGTTCAAGTGTTTCCAGGAGTGTAGCAAGTTCAAGGTGTTTGGTGGCGGCGACAGGGTTTGTTTTTCGGCTAAGAGATTGGGCAAGTTGGCTTTGTGGGACAATTGTCCGGGGAAGGCAGAGTGGCGGTGGATTGATGGCGTTCCCGGAAGTGGCGATGGGCTTTGCAGGGGGTTTGTTTTTGAGGCCAGGCTCACCACATTGCCTTGA

Protein Analysis

359

Amino Acids

40.39

Weight (kDa)

9.66

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 41 6.3e-08 F-box domain
F-box-like PF12937 2 - 39 2.9e-06 F-box-like
Beta-prop_KIB1-4 PF03478 84 - 287 2e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 497
AccBSI CCGCTC 2 cut(s) 75, 279
AccII CGCG 5 cut(s) 453, 479, 581, 629, 732
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 518
AcyI GRCGYC 2 cut(s) 498, 591
AfiI CCNNNNNNNGG 5 cut(s) 401, 417, 457, 862, 1022
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 4 cut(s) 712, 769, 877, 904
AjiI CACGTC 3 cut(s) 220, 663, 697
AjnI CCWGG 3 cut(s) 410, 885, 1058
AluBI AGCT 6 cut(s) 400, 472, 622, 646, 654, 834
AluI AGCT 6 cut(s) 400, 472, 622, 646, 654, 834
Alw21I GWGCWC 4 cut(s) 474, 635, 656, 800
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 631
AlwI GGATC 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 6 cut(s) 307, 324, 564, 716, 853, 1056
ApaLI GTGCAC 1 cut(s) 631
ApeKI GCWGC 1 cut(s) 549
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
Asp700I GAANNNNTTC 1 cut(s) 623
AspLEI GCGC 3 cut(s) 481, 500, 583
AspS9I GGNCC 3 cut(s) 324, 460, 853
AsuC2I CCSGG 2 cut(s) 981, 1017
AsuHPI GGTGA 5 cut(s) 97, 364, 379, 457, 1057
AsuII TTCGAA 1 cut(s) 641
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 2 cut(s) 474, 656
BauI CACGAG 1 cut(s) 560
BbsI GAAGAC 2 cut(s) 214, 568
Bbv12I GWGCWC 4 cut(s) 474, 635, 656, 800
BbvCI CCTCAGC 2 cut(s) 396, 647
BbvI GCAGC 1 cut(s) 561
BccI CCATC 3 cut(s) 748, 1001, 1022
BceAI ACGGC 3 cut(s) 439, 586, 731
BciT130I CCWGG 3 cut(s) 412, 887, 1060
BcnI CCSGG 2 cut(s) 981, 1017
BcoDI GTCTC 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 747
BisI GCNGC 7 cut(s) 73, 241, 379, 477, 496, 550, 919
BlsI GCNGC 7 cut(s) 74, 242, 380, 478, 497, 551, 920
Bme1390I CCNGG 5 cut(s) 412, 887, 981, 1017, 1060
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 674
BmgBI CACGTC 3 cut(s) 220, 663, 697
BmgT120I GGNCC 3 cut(s) 324, 460, 853
BmiI GGNNCC 5 cut(s) 248, 406, 427, 499, 611
BmrFI CCNGG 5 cut(s) 412, 887, 981, 1017, 1060
BoxI GACNNNNGTC 1 cut(s) 975
BpiI GAAGAC 2 cut(s) 214, 568
Bpu10I CCTNAGC 2 cut(s) 396, 647
Bpu14I TTCGAA 1 cut(s) 641
BpuMI CCSGG 2 cut(s) 981, 1017
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 2 cut(s) 498, 591
BsaJI CCNNGG 2 cut(s) 602, 980
Bsc4I CCNNNNNNNGG 5 cut(s) 401, 417, 457, 862, 1022
Bse118I RCCGGY 2 cut(s) 500, 862
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 1070
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 3 cut(s) 412, 887, 1060
BseDI CCNNGG 2 cut(s) 602, 980
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 5 cut(s) 401, 417, 457, 862, 1022
BseMI GCAATG 1 cut(s) 1070
BseMII CTCAG 4 cut(s) 71, 410, 638, 806
BseNI ACTGG 1 cut(s) 613
BseRI GAGGAG 9 cut(s) 35, 135, 149, 190, 289, 292, 302, 622, 664
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 1 cut(s) 561
BseYI CCCAGC 1 cut(s) 834
Bsh1236I CGCG 5 cut(s) 453, 479, 581, 629, 732
BshFI GGCC 6 cut(s) 309, 326, 566, 718, 855, 1058
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 4 cut(s) 474, 635, 656, 800
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 6 cut(s) 306, 492, 501, 863, 980, 1017
BslFI GGGAC 4 cut(s) 334, 707, 857, 983
BslI CCNNNNNNNGG 5 cut(s) 401, 417, 457, 862, 1022
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 4 cut(s) 334, 707, 857, 983
BsmI GAATGC 1 cut(s) 864
BsnI GGCC 6 cut(s) 309, 326, 566, 718, 855, 1058
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 4 cut(s) 474, 635, 656, 800
Bsp143I GATC 4 cut(s) 60, 66, 555, 747
BspANI GGCC 6 cut(s) 309, 326, 566, 718, 855, 1058
BspCNI CTCAG 4 cut(s) 70, 409, 639, 807
BspFNI CGCG 5 cut(s) 453, 479, 581, 629, 732
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 5 cut(s) 248, 406, 427, 499, 611
BspPI GGATC 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 629
BspT104I TTCGAA 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 497
BsrBI CCGCTC 2 cut(s) 75, 279
BsrDI GCAATG 1 cut(s) 1070
BsrFI RCCGGY 2 cut(s) 500, 862
BsrI ACTGG 1 cut(s) 613
BssAI RCCGGY 2 cut(s) 500, 862
BssECI CCNNGG 2 cut(s) 602, 980
BssMI GATC 4 cut(s) 60, 66, 555, 747
BssNI GRCGYC 2 cut(s) 498, 591
BssSI CACGAG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 3 cut(s) 412, 887, 1060
Bst6I CTCTTC 2 cut(s) 529, 629
BstACI GRCGYC 2 cut(s) 498, 591
BstBI TTCGAA 1 cut(s) 641
BstDEI CTNAG 5 cut(s) 57, 396, 647, 815, 942
BstDSI CCRYGG 1 cut(s) 602
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 5 cut(s) 453, 479, 581, 629, 732
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 3 cut(s) 481, 500, 583
BstKTI GATC 4 cut(s) 63, 69, 558, 750
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 4 cut(s) 60, 66, 555, 747
BstMWI GCNNNNNNNGC 6 cut(s) 81, 249, 478, 501, 594, 679
BstNI CCWGG 3 cut(s) 412, 887, 1060
BstPAI GACNNNNGTC 1 cut(s) 975
BstSCI CCNGG 5 cut(s) 410, 885, 979, 1015, 1058
BstSLI GKGCMC 1 cut(s) 635
BstUI CGCG 5 cut(s) 453, 479, 581, 629, 732
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 2 cut(s) 214, 568
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
BsuRI GGCC 6 cut(s) 309, 326, 566, 718, 855, 1058
BtgI CCRYGG 1 cut(s) 602
BtgZI GCGATG 1 cut(s) 1041
BtrI CACGTC 3 cut(s) 220, 663, 697
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 63
CfoI GCGC 3 cut(s) 481, 500, 583
Cfr10I RCCGGY 2 cut(s) 500, 862
Cfr13I GGNCC 3 cut(s) 324, 460, 853
CseI GACGC 1 cut(s) 442
CviAII CATG 2 cut(s) 64, 457
DdeI CTNAG 5 cut(s) 57, 396, 647, 815, 942
DinI GGCGCC 1 cut(s) 499
DpnI GATC 4 cut(s) 62, 68, 557, 749
DpnII GATC 4 cut(s) 60, 66, 555, 747
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 529, 629
EarI CTCTTC 2 cut(s) 529, 629
EciI GGCGGA 5 cut(s) 143, 158, 227, 397, 433
Ecl136II GAGCTC 2 cut(s) 472, 654
Eco24I GRGCYC 2 cut(s) 474, 656
Eco47I GGWCC 1 cut(s) 460
Eco53kI GAGCTC 2 cut(s) 472, 654
Eco88I CYCGRG 1 cut(s) 674
EcoICRI GAGCTC 2 cut(s) 472, 654
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoRII CCWGG 3 cut(s) 410, 885, 1058
EcoT38I GRGCYC 2 cut(s) 474, 656
EgeI GGCGCC 1 cut(s) 499
EheI GGCGCC 1 cut(s) 499
FaeI CATG 2 cut(s) 67, 460
FaiI YATR 3 cut(s) 65, 458, 872
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FaqI GGGAC 4 cut(s) 334, 707, 857, 983
FatI CATG 2 cut(s) 63, 456
FauI CCCGC 5 cut(s) 383, 458, 554, 725, 844
Fnu4HI GCNGC 7 cut(s) 73, 241, 379, 477, 496, 550, 919
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 474, 656
Fsp4HI GCNGC 7 cut(s) 73, 241, 379, 477, 496, 550, 919
GlaI GCGC 3 cut(s) 480, 499, 582
GluI GCNGC 7 cut(s) 73, 241, 379, 477, 496, 550, 919
GsaI CCCAGC 1 cut(s) 838
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 6 cut(s) 309, 326, 566, 718, 855, 1058
HapII CCGG 6 cut(s) 306, 492, 501, 863, 980, 1017
HgaI GACGC 1 cut(s) 442
HhaI GCGC 3 cut(s) 481, 500, 583
Hin1I GRCGYC 2 cut(s) 498, 591
Hin1II CATG 2 cut(s) 67, 460
Hin6I GCGC 3 cut(s) 479, 498, 581
HinP1I GCGC 3 cut(s) 479, 498, 581
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 7 cut(s) 5, 20, 329, 338, 440, 569, 805
HpaII CCGG 6 cut(s) 306, 492, 501, 863, 980, 1017
HphI GGTGA 5 cut(s) 97, 364, 379, 457, 1057
Hpy166II GTNNAC 3 cut(s) 439, 633, 666
Hpy188I TCNGA 2 cut(s) 60, 810
Hpy188III TCNNGA 3 cut(s) 64, 676, 751
Hpy8I GTNNAC 3 cut(s) 439, 633, 666
Hpy99I CGWCG 5 cut(s) 296, 359, 593, 596, 805
HpyAV CCTTC 4 cut(s) 127, 283, 787, 979
HpyCH4IV ACGT 4 cut(s) 219, 591, 662, 696
HpyCH4V TGCA 3 cut(s) 363, 633, 1038
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 249, 478, 501, 594, 679
HpyF3I CTNAG 5 cut(s) 57, 396, 647, 815, 942
HpySE526I ACGT 4 cut(s) 219, 591, 662, 696
Hsp92I GRCGYC 2 cut(s) 498, 591
Hsp92II CATG 2 cut(s) 67, 460
HspAI GCGC 3 cut(s) 479, 498, 581
KasI GGCGCC 1 cut(s) 497
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 60, 66, 555, 747
LguI GCTCTTC 1 cut(s) 629
LmnI GCTCC 8 cut(s) 80, 252, 284, 410, 431, 609, 651, 741
Lsp1109I GCAGC 1 cut(s) 561
MaeII ACGT 4 cut(s) 219, 591, 662, 696
MalI GATC 4 cut(s) 62, 68, 557, 749
MbiI CCGCTC 2 cut(s) 75, 279
MboI GATC 4 cut(s) 60, 66, 555, 747
MboII GAAGA 6 cut(s) 28, 214, 516, 524, 568, 616
MfeI CAATTG 1 cut(s) 973
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 4 cut(s) 474, 635, 656, 800
MluCI AATT 2 cut(s) 518, 973
Mly113I GGCGCC 1 cut(s) 498
MlyI GAGTC 6 cut(s) 14, 14, 323, 332, 434, 563
MroNI GCCGGC 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 623
MspA1I CMGCKG 2 cut(s) 243, 510
MspI CCGG 6 cut(s) 306, 492, 501, 863, 980, 1017
MspR9I CCNGG 5 cut(s) 412, 887, 981, 1017, 1060
MunI CAATTG 1 cut(s) 973
Mva1269I GAATGC 1 cut(s) 864
MvaI CCWGG 3 cut(s) 412, 887, 1060
MvnI CGCG 5 cut(s) 453, 479, 581, 629, 732
MwoI GCNNNNNNNGC 6 cut(s) 81, 249, 478, 501, 594, 679
NaeI GCCGGC 1 cut(s) 502
NarI GGCGCC 1 cut(s) 498
NciI CCSGG 2 cut(s) 981, 1017
NdeII GATC 4 cut(s) 60, 66, 555, 747
NgoMIV GCCGGC 1 cut(s) 500
NlaIII CATG 2 cut(s) 67, 460
NlaIV GGNNCC 5 cut(s) 248, 406, 427, 499, 611
NmeAIII GCCGAG 2 cut(s) 381, 770
NspV TTCGAA 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 674
PagI TCATGA 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 2 cut(s) 585, 797
PctI GAATGC 1 cut(s) 864
PdiI GCCGGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 1 cut(s) 805
PflFI GACNNNGTC 1 cut(s) 572
PfoI TCCNGGA 2 cut(s) 885, 1015
PkrI GCNGC 7 cut(s) 74, 242, 380, 478, 497, 551, 920
PleI GAGTC 6 cut(s) 13, 14, 323, 332, 434, 563
PluTI GGCGCC 1 cut(s) 501
PpsI GAGTC 6 cut(s) 13, 14, 323, 332, 434, 563
PshAI GACNNNNGTC 1 cut(s) 975
Psp124BI GAGCTC 2 cut(s) 474, 656
Psp6I CCWGG 3 cut(s) 410, 885, 1058
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 3 cut(s) 410, 885, 1058
PspN4I GGNNCC 5 cut(s) 248, 406, 427, 499, 611
PspPI GGNCC 3 cut(s) 324, 460, 853
PsuI RGATCY 1 cut(s) 747
PsyI GACNNNGTC 1 cut(s) 572
SacI GAGCTC 2 cut(s) 474, 656
SapI GCTCTTC 1 cut(s) 629
SatI GCNGC 7 cut(s) 73, 241, 379, 477, 496, 550, 919
Sau3AI GATC 4 cut(s) 60, 66, 555, 747
Sau96I GGNCC 3 cut(s) 324, 460, 853
SchI GAGTC 6 cut(s) 14, 14, 323, 332, 434, 563
ScrFI CCNGG 5 cut(s) 412, 887, 981, 1017, 1060
SduI GDGCHC 4 cut(s) 474, 635, 656, 800
SfoI GGCGCC 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 674
SfuI TTCGAA 1 cut(s) 641
SinI GGWCC 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 2 cut(s) 518, 973
SspDI GGCGCC 1 cut(s) 497
SstI GAGCTC 2 cut(s) 474, 656
StyD4I CCNGG 5 cut(s) 410, 885, 979, 1015, 1058
TaiI ACGT 4 cut(s) 222, 594, 665, 699
TaqI TCGA 6 cut(s) 225, 261, 641, 675, 702, 800
TaqII GACCGA 1 cut(s) 562
TasI AATT 2 cut(s) 518, 973
TauI GCSGC 6 cut(s) 75, 243, 381, 479, 498, 921
TfiI GAWTC 1 cut(s) 805
TscAI CASTG 1 cut(s) 620
TseI GCWGC 1 cut(s) 549
TspDTI ATGAA 1 cut(s) 109
TspGWI ACGGA 3 cut(s) 67, 418, 525
TspRI CASTG 1 cut(s) 620
Tth111I GACNNNGTC 1 cut(s) 572
VneI GTGCAC 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 460
XagI CCTNNNNNAGG 1 cut(s) 415
XapI RAATTY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 623
ZraI GACGTC 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.