RLG00000013402

SKP1-interacting partner

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
31048548 .. 31049636
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013402

Sequence Viewer

Length: 1089 bp
ATGGAGTCTCTCCCACAAGACGCCCTCCACCATATCTTCTCCCTCCTCCCCCTCCCTCAGATCATGATCTGCCGCTCCGTCAGCAAGCACCTCCACCAAGTCCTCACCTCCCCTTCCTTCATCCACCTCATCTCCACCCACACTCCTCCCCTCCGCCTCCTCGCCCTCCGCCCTCCCCACCACCGCCACCACCACCTCTCCTCCCCTCCCTCCCTCCACGTCTTCGACCCCGACCTCCACCGCTGGCTCCGCTTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCCGGCCTCCTCTACCTCTGGGCCGACTCCCCCGACTCCACCAAGTCCCTCGTCGTCTGCAACCCTCTCACCCGCCGCTTCCTCACCTTGCCTCAGCTCGGCTCCGCCTGGTCAAGGCACGGCTCCGTCCTCGTTGACTCCGCCACCCGCGTCATGGTCCTCACCGAGCTCGCCGCGCTCTACTTCTCCGCCGGCGCCGGCAACGGCAACCACTGGCTCAAATTCTCTTCCAATCTTCCGTCCAAGCCCCGCAGCCCGATCCTGGTGGCCGACTCGGTCTTCGCGCTCTGCGACGTCGGCTCGCCGTGGAGGAGCCAGTGGAAGCTTTTCGCGTGCACCATTTCGAAGCTGAGGAGCTCGCAGACGTGGACGAGGCTCGAGAAGCAGGAGTGGGGGGACGTGTTCGACATTTTGAAACGGCCTCGTTTGGTTCGCGGAAATGGGAGCAATAAGATCTTGATGGTTGGGGGGTTGAAGTCCTCGTTTTCGCTGAACTCTGCGTGCTCGACGATTCTGATACTGAGGCTGGATTTGGATAGCTGGGAGTGGGACGAGGCGGGCCGAATGCCGGTGGATATGTTTAAGTGCTTTCAGGAGTGTAGCAAGTTCAAGGTGTTTGGTGGCGGCGACAGGGTTTGTTTTTCGGCTAAGAGATTGGGGAAGTTGGCTTTGTGGGACAATTGTCCGGGGAAGGCAGAGTGGCGGTGGATTGATGGCGTTCCCGGAAGTGGCGATGGGCTTTGCAGGGGGTTTGTTTTCGAGGCCAGGCTCACTCCATTGCCTTGA

Protein Analysis

363

Amino Acids

40.64

Weight (kDa)

9.5

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 41 2.3e-08 F-box domain
F-box-like PF12937 2 - 39 1.1e-06 F-box-like
Beta-prop_KIB1-4 PF03478 83 - 290 2.3e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 497
AccBSI CCGCTC 2 cut(s) 75, 279
AccII CGCG 5 cut(s) 453, 479, 587, 635, 738
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 1 cut(s) 524
AcyI GRCGYC 3 cut(s) 21, 498, 597
AfiI CCNNNNNNNGG 6 cut(s) 401, 417, 457, 565, 871, 1031
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 3 cut(s) 718, 778, 913
AjiI CACGTC 3 cut(s) 220, 669, 703
AjnI CCWGG 3 cut(s) 410, 564, 1067
AluBI AGCT 6 cut(s) 400, 472, 628, 652, 660, 843
AluI AGCT 6 cut(s) 400, 472, 628, 652, 660, 843
Alw21I GWGCWC 4 cut(s) 474, 641, 662, 809
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 1 cut(s) 556
Ama87I CYCGRG 1 cut(s) 680
AoxI GGCC 6 cut(s) 307, 324, 570, 722, 862, 1065
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 555
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 3 cut(s) 481, 500, 589
AspS9I GGNCC 3 cut(s) 324, 460, 862
AsuC2I CCSGG 2 cut(s) 990, 1026
AsuHPI GGTGA 4 cut(s) 97, 364, 379, 457
AsuII TTCGAA 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 680
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 641
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 2 cut(s) 474, 662
BbsI GAAGAC 2 cut(s) 214, 574
Bbv12I GWGCWC 4 cut(s) 474, 641, 662, 809
BbvCI CCTCAGC 2 cut(s) 396, 653
BbvI GCAGC 1 cut(s) 567
BccI CCATC 3 cut(s) 757, 1010, 1031
BceAI ACGGC 4 cut(s) 439, 523, 592, 737
BciT130I CCWGG 3 cut(s) 412, 566, 1069
BcnI CCSGG 2 cut(s) 990, 1026
BcoDI GTCTC 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 756
BisI GCNGC 5 cut(s) 73, 379, 477, 556, 928
BlsI GCNGC 5 cut(s) 74, 380, 478, 557, 929
Bme1390I CCNGG 5 cut(s) 412, 566, 990, 1026, 1069
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 680
BmgBI CACGTC 3 cut(s) 220, 669, 703
BmgT120I GGNCC 3 cut(s) 324, 460, 862
BmiI GGNNCC 5 cut(s) 248, 406, 427, 499, 617
BmrFI CCNGG 5 cut(s) 412, 566, 990, 1026, 1069
BoxI GACNNNNGTC 1 cut(s) 984
BpiI GAAGAC 2 cut(s) 214, 574
Bpu10I CCTNAGC 2 cut(s) 396, 653
Bpu14I TTCGAA 1 cut(s) 647
BpuMI CCSGG 2 cut(s) 990, 1026
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 3 cut(s) 21, 498, 597
BsaJI CCNNGG 2 cut(s) 608, 989
BsaXI ACNNNNNCTCC 8 cut(s) 116, 127, 146, 157, 182, 185, 212, 215
Bsc4I CCNNNNNNNGG 6 cut(s) 401, 417, 457, 565, 871, 1031
Bse118I RCCGGY 3 cut(s) 494, 500, 871
Bse1I ACTGG 2 cut(s) 521, 619
Bse3DI GCAATG 1 cut(s) 1079
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 3 cut(s) 412, 566, 1069
BseDI CCNNGG 2 cut(s) 608, 989
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 6 cut(s) 401, 417, 457, 565, 871, 1031
BseMI GCAATG 1 cut(s) 1079
BseMII CTCAG 4 cut(s) 71, 410, 644, 815
BseNI ACTGG 2 cut(s) 521, 619
BseRI GAGGAG 9 cut(s) 35, 135, 149, 190, 289, 292, 302, 628, 670
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 1 cut(s) 567
BseYI CCCAGC 1 cut(s) 843
Bsh1236I CGCG 5 cut(s) 453, 479, 587, 635, 738
BshFI GGCC 6 cut(s) 309, 326, 572, 724, 864, 1067
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 4 cut(s) 474, 641, 662, 809
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 6 cut(s) 306, 495, 501, 872, 989, 1026
BslFI GGGAC 4 cut(s) 334, 713, 866, 992
BslI CCNNNNNNNGG 6 cut(s) 401, 417, 457, 565, 871, 1031
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 4 cut(s) 334, 713, 866, 992
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 6 cut(s) 309, 326, 572, 724, 864, 1067
BsoBI CYCGRG 1 cut(s) 680
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 4 cut(s) 474, 641, 662, 809
Bsp143I GATC 4 cut(s) 60, 66, 561, 756
BspANI GGCC 6 cut(s) 309, 326, 572, 724, 864, 1067
BspCNI CTCAG 4 cut(s) 70, 409, 645, 816
BspFNI CGCG 5 cut(s) 453, 479, 587, 635, 738
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 5 cut(s) 248, 406, 427, 499, 617
BspPI GGATC 1 cut(s) 556
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 497
BsrBI CCGCTC 2 cut(s) 75, 279
BsrDI GCAATG 1 cut(s) 1079
BsrFI RCCGGY 3 cut(s) 494, 500, 871
BsrI ACTGG 2 cut(s) 521, 619
BssAI RCCGGY 3 cut(s) 494, 500, 871
BssECI CCNNGG 2 cut(s) 608, 989
BssMI GATC 4 cut(s) 60, 66, 561, 756
BssNI GRCGYC 3 cut(s) 21, 498, 597
Bst2UI CCWGG 3 cut(s) 412, 566, 1069
Bst6I CTCTTC 1 cut(s) 535
BstACI GRCGYC 3 cut(s) 21, 498, 597
BstBI TTCGAA 1 cut(s) 647
BstDEI CTNAG 5 cut(s) 57, 396, 653, 824, 951
BstDSI CCRYGG 1 cut(s) 608
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 5 cut(s) 453, 479, 587, 635, 738
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 3 cut(s) 481, 500, 589
BstKTI GATC 4 cut(s) 63, 69, 564, 759
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 4 cut(s) 60, 66, 561, 756
BstMWI GCNNNNNNNGC 5 cut(s) 81, 249, 478, 600, 685
BstNI CCWGG 3 cut(s) 412, 566, 1069
BstPAI GACNNNNGTC 1 cut(s) 984
BstSCI CCNGG 5 cut(s) 410, 564, 988, 1024, 1067
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 5 cut(s) 453, 479, 587, 635, 738
BstV1I GCAGC 1 cut(s) 567
BstV2I GAAGAC 2 cut(s) 214, 574
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
BsuRI GGCC 6 cut(s) 309, 326, 572, 724, 864, 1067
BtgI CCRYGG 1 cut(s) 608
BtgZI GCGATG 1 cut(s) 1050
BtrI CACGTC 3 cut(s) 220, 669, 703
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 514, 626
CciI TCATGA 1 cut(s) 63
CfoI GCGC 3 cut(s) 481, 500, 589
Cfr10I RCCGGY 3 cut(s) 494, 500, 871
Cfr13I GGNCC 3 cut(s) 324, 460, 862
CseI GACGC 2 cut(s) 29, 442
CviAII CATG 2 cut(s) 64, 457
DdeI CTNAG 5 cut(s) 57, 396, 653, 824, 951
DinI GGCGCC 1 cut(s) 499
DpnI GATC 4 cut(s) 62, 68, 563, 758
DpnII GATC 4 cut(s) 60, 66, 561, 756
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
EciI GGCGGA 5 cut(s) 143, 158, 397, 433, 481
Ecl136II GAGCTC 2 cut(s) 472, 660
Eco24I GRGCYC 2 cut(s) 474, 662
Eco47I GGWCC 1 cut(s) 460
Eco53kI GAGCTC 2 cut(s) 472, 660
Eco88I CYCGRG 1 cut(s) 680
EcoICRI GAGCTC 2 cut(s) 472, 660
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoRII CCWGG 3 cut(s) 410, 564, 1067
EcoT38I GRGCYC 2 cut(s) 474, 662
EgeI GGCGCC 1 cut(s) 499
EheI GGCGCC 1 cut(s) 499
FaeI CATG 2 cut(s) 67, 460
FaiI YATR 4 cut(s) 33, 65, 458, 881
FaqI GGGAC 4 cut(s) 334, 713, 866, 992
FatI CATG 2 cut(s) 63, 456
FauI CCCGC 4 cut(s) 383, 458, 560, 853
Fnu4HI GCNGC 5 cut(s) 73, 379, 477, 556, 928
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 474, 662
Fsp4HI GCNGC 5 cut(s) 73, 379, 477, 556, 928
GlaI GCGC 3 cut(s) 480, 499, 588
GluI GCNGC 5 cut(s) 73, 379, 477, 556, 928
GsaI CCCAGC 1 cut(s) 847
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 6 cut(s) 309, 326, 572, 724, 864, 1067
HapII CCGG 6 cut(s) 306, 495, 501, 872, 989, 1026
HgaI GACGC 2 cut(s) 29, 442
HhaI GCGC 3 cut(s) 481, 500, 589
Hin1I GRCGYC 3 cut(s) 21, 498, 597
Hin1II CATG 2 cut(s) 67, 460
Hin6I GCGC 3 cut(s) 479, 498, 587
HinP1I GCGC 3 cut(s) 479, 498, 587
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 6 cut(s) 5, 329, 338, 440, 575, 814
HpaII CCGG 6 cut(s) 306, 495, 501, 872, 989, 1026
HphI GGTGA 4 cut(s) 97, 364, 379, 457
Hpy166II GTNNAC 3 cut(s) 439, 639, 672
Hpy188I TCNGA 2 cut(s) 60, 819
Hpy188III TCNNGA 4 cut(s) 64, 682, 760, 896
Hpy8I GTNNAC 3 cut(s) 439, 639, 672
Hpy99I CGWCG 5 cut(s) 296, 359, 599, 602, 814
HpyAV CCTTC 4 cut(s) 123, 127, 283, 988
HpyCH4IV ACGT 4 cut(s) 219, 597, 668, 702
HpyCH4V TGCA 3 cut(s) 363, 639, 1047
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 249, 478, 600, 685
HpyF3I CTNAG 5 cut(s) 57, 396, 653, 824, 951
HpySE526I ACGT 4 cut(s) 219, 597, 668, 702
Hsp92I GRCGYC 3 cut(s) 21, 498, 597
Hsp92II CATG 2 cut(s) 67, 460
HspAI GCGC 3 cut(s) 479, 498, 587
KasI GGCGCC 1 cut(s) 497
KroI GCCGGC 2 cut(s) 494, 500
KroNI GCCGGC 2 cut(s) 496, 502
Kzo9I GATC 4 cut(s) 60, 66, 561, 756
LmnI GCTCC 8 cut(s) 80, 252, 284, 410, 431, 615, 657, 747
Lsp1109I GCAGC 1 cut(s) 567
MaeII ACGT 4 cut(s) 219, 597, 668, 702
MalI GATC 4 cut(s) 62, 68, 563, 758
MbiI CCGCTC 2 cut(s) 75, 279
MboI GATC 4 cut(s) 60, 66, 561, 756
MboII GAAGA 5 cut(s) 28, 214, 522, 530, 574
MfeI CAATTG 1 cut(s) 982
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 4 cut(s) 474, 641, 662, 809
MluCI AATT 2 cut(s) 524, 982
Mly113I GGCGCC 1 cut(s) 498
MlyI GAGTC 5 cut(s) 14, 323, 332, 434, 569
MreI CGCCGGCG 1 cut(s) 494
MroNI GCCGGC 2 cut(s) 494, 500
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 6 cut(s) 306, 495, 501, 872, 989, 1026
MspR9I CCNGG 5 cut(s) 412, 566, 990, 1026, 1069
MunI CAATTG 1 cut(s) 982
Mva1269I GAATGC 1 cut(s) 873
MvaI CCWGG 3 cut(s) 412, 566, 1069
MvnI CGCG 5 cut(s) 453, 479, 587, 635, 738
MwoI GCNNNNNNNGC 5 cut(s) 81, 249, 478, 600, 685
NaeI GCCGGC 2 cut(s) 496, 502
NarI GGCGCC 1 cut(s) 498
NciI CCSGG 2 cut(s) 990, 1026
NdeII GATC 4 cut(s) 60, 66, 561, 756
NgoMIV GCCGGC 2 cut(s) 494, 500
NlaIII CATG 2 cut(s) 67, 460
NlaIV GGNNCC 5 cut(s) 248, 406, 427, 499, 617
NmeAIII GCCGAG 1 cut(s) 381
NspV TTCGAA 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 680
PagI TCATGA 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PctI GAATGC 1 cut(s) 873
PdiI GCCGGC 2 cut(s) 496, 502
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 1 cut(s) 814
PflFI GACNNNGTC 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 1024
PkrI GCNGC 5 cut(s) 74, 380, 478, 557, 929
PleI GAGTC 5 cut(s) 13, 323, 332, 434, 569
PluTI GGCGCC 1 cut(s) 501
PpsI GAGTC 5 cut(s) 13, 323, 332, 434, 569
PshAI GACNNNNGTC 1 cut(s) 984
Psp124BI GAGCTC 2 cut(s) 474, 662
Psp6I CCWGG 3 cut(s) 410, 564, 1067
PspFI CCCAGC 1 cut(s) 843
PspGI CCWGG 3 cut(s) 410, 564, 1067
PspN4I GGNNCC 5 cut(s) 248, 406, 427, 499, 617
PspPI GGNCC 3 cut(s) 324, 460, 862
PsuI RGATCY 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 578
SacI GAGCTC 2 cut(s) 474, 662
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 5 cut(s) 73, 379, 477, 556, 928
Sau3AI GATC 4 cut(s) 60, 66, 561, 756
Sau96I GGNCC 3 cut(s) 324, 460, 862
SchI GAGTC 5 cut(s) 14, 323, 332, 434, 569
ScrFI CCNGG 5 cut(s) 412, 566, 990, 1026, 1069
SduI GDGCHC 4 cut(s) 474, 641, 662, 809
SfoI GGCGCC 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 680
SfuI TTCGAA 1 cut(s) 647
SgrAI CRCCGGYG 1 cut(s) 494
SinI GGWCC 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 2 cut(s) 524, 982
SspDI GGCGCC 1 cut(s) 497
SstI GAGCTC 2 cut(s) 474, 662
StyD4I CCNGG 5 cut(s) 410, 564, 988, 1024, 1067
TaiI ACGT 4 cut(s) 222, 600, 671, 705
TaqI TCGA 7 cut(s) 225, 261, 647, 681, 708, 809, 1062
TaqII GACCGA 1 cut(s) 568
TasI AATT 2 cut(s) 524, 982
TauI GCSGC 4 cut(s) 75, 381, 479, 930
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TscAI CASTG 2 cut(s) 521, 626
TseI GCWGC 1 cut(s) 555
TspDTI ATGAA 1 cut(s) 109
TspGWI ACGGA 3 cut(s) 67, 418, 531
TspRI CASTG 2 cut(s) 521, 626
Tth111I GACNNNGTC 1 cut(s) 578
VneI GTGCAC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 460
XagI CCTNNNNNAGG 1 cut(s) 415
XapI RAATTY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 629
ZraI GACGTC 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.