Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Forward (+)

8675414 .. 8676009

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14282.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGTGAAGATAAGAGAAAAATCGTAAAGGCCTCCACCGTTGCCTCCGCTTCTCTCTCGACTTCCTCCCCCCACCCTGTCGCCTCCTCCTCCAGCCTCCTCTACCTCTGGGCCGACTCCCCCTCCGACTCCTCCAAGTCCCTCCTCCTCTGCAACCCCCTCACGCGCCGCTTCCGCACGTTGCCCCAGCTCGGCTCCGCCTGGTCAAGACACGGCTCCGTCTTTGTTGACTCCGCCGGTAGAGTCATGGTCCTCACTGAGCTTGCCGCGCTCTACTTCTCCGCCGGAGAGGACGACCGCTGGCTCAAATTCTCCTCCAATCTCTCGTCCAAGCCAGCCCGATCCTGGCGGCGGAGGAGTCGGTCTTCGCTCTCTGCGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

128

Amino Acids

13.9

Weight (kDa)

10.64

Isoelectric Point (pI)

80.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	166, 269
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	191, 345, 351
AjnI	CCWGG	2 cut(s)	200, 344
AluBI	AGCT	2 cut(s)	190, 262
AluI	AGCT	2 cut(s)	190, 262
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	30, 111
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	168, 271
AspS9I	GGNCC	2 cut(s)	111, 250
AvaII	GGWCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	357
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	202, 346
BisI	GCNGC	3 cut(s)	169, 267, 350
BlsI	GCNGC	3 cut(s)	170, 268, 351
Bme1390I	CCNGG	2 cut(s)	202, 346
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	111, 250
BmiI	GGNNCC	2 cut(s)	196, 217
BmrFI	CCNGG	2 cut(s)	202, 346
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 345, 351
Bse118I	RCCGGY	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	202, 346
BseLI	CCNNNNNNNGG	3 cut(s)	191, 345, 351
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	8 cut(s)	76, 79, 89, 121, 134, 137, 304, 370
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	2 cut(s)	166, 269
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	32, 113
BsiEI	CGRYCG	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	237, 285
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	191, 345, 351
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	32, 113
Bsp143I	GATC	1 cut(s)	341
BspANI	GGCC	2 cut(s)	32, 113
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	166, 269
BspLI	GGNNCC	2 cut(s)	196, 217
BspPI	GGATC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	202, 346
Bst4CI	ACNGT	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	264, 302, 336
BstDEI	CTNAG	1 cut(s)	258
BstFNI	CGCG	2 cut(s)	166, 269
BstHHI	GCGC	2 cut(s)	168, 271
BstKTI	GATC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	341
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 268
BstNI	CCWGG	2 cut(s)	202, 346
BstSCI	CCNGG	2 cut(s)	200, 344
BstUI	CGCG	2 cut(s)	166, 269
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	32, 113
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	264, 302, 336
CfoI	GCGC	2 cut(s)	168, 271
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	111, 250
CviAII	CATG	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
EciI	GGCGGA	4 cut(s)	187, 223, 271, 367
Eco147I	AGGCCT	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	200, 344
FaeI	CATG	1 cut(s)	250
FaiI	YATR	1 cut(s)	248
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	169, 267, 350
Fsp4HI	GCNGC	3 cut(s)	169, 267, 350
GlaI	GCGC	2 cut(s)	167, 270
GluI	GCNGC	3 cut(s)	169, 267, 350
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	32, 113
HapII	CCGG	2 cut(s)	237, 285
HhaI	GCGC	2 cut(s)	168, 271
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	2 cut(s)	166, 269
HinP1I	GCGC	2 cut(s)	166, 269
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	116, 128, 230, 243, 358
HpaII	CCGG	2 cut(s)	237, 285
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	58, 207
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	179, 380
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 268
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	179, 380
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	2 cut(s)	166, 269
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	200, 221
MaeII	ACGT	2 cut(s)	179, 380
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	2 cut(s)	20, 357
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	5 cut(s)	110, 122, 224, 252, 367
MmeI	TCCRAC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	2 cut(s)	237, 285
MspR9I	CCNGG	2 cut(s)	202, 346
MvaI	CCWGG	2 cut(s)	202, 346
MvnI	CGCG	2 cut(s)	166, 269
MwoI	GCNNNNNNNGC	2 cut(s)	174, 268
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	196, 217
NmeAIII	GCCGAG	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	170, 268, 351
PleI	GAGTC	5 cut(s)	110, 122, 224, 251, 366
PpsI	GAGTC	5 cut(s)	110, 122, 224, 251, 366
Psp6I	CCWGG	2 cut(s)	200, 344
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	200, 344
PspN4I	GGNNCC	2 cut(s)	196, 217
PspPI	GGNCC	2 cut(s)	111, 250
SatI	GCNGC	3 cut(s)	169, 267, 350
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	2 cut(s)	111, 250
SchI	GAGTC	5 cut(s)	110, 122, 224, 252, 367
ScrFI	CCNGG	2 cut(s)	202, 346
SetI	ASST	5 cut(s)	108, 182, 192, 264, 383
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	200, 344
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	182, 383
TaqI	TCGA	1 cut(s)	59
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	308
TauI	GCSGC	3 cut(s)	171, 269, 352
TscAI	CASTG	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.