Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Reverse (-)

2615905 .. 2640658

Gene Structure 24754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCGAATTATGGACTTCCTATTTTTATTATTCCTACCCTTGTCATTTTTTGCCGACAAACGGAATTGTCGGCGGCACCGCCACGCCAGCATATGTTCAGACATAACGTCCTGTTCGCCGACGAATATGGCGGAAATTCAGGATGGATAATGACCAGGAAATTACCCAGCTCGGCTCCGCCTAGTCAAGGCACGGCTCCGTCCTCGTTGACTCCACCACCCGCGTCATGGTCCTCACCTAGCTCGCCGCGCTTTACTTCTCCGCCGGCGCCGGAAACCACTGGCTCAAATTCTCTTCCAATCTTCCGTCCAAGCCCCGCAGCCCGATCCTCGTGGCCGACTCTGTCTTCGCGCTCTGCGACGTCGGCTCGCCGTGGAGGAGCCAGTGGAAGCTCTTCGCGACAAACACGTCAAATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

14.94

Weight (kDa)

11.71

Isoelectric Point (pI)

86.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	408
AatII	GACGTC	1 cut(s)	365
AccB1I	GGYRCC	2 cut(s)	76, 268
AccII	CGCG	4 cut(s)	224, 250, 352, 400
AciI	CCGC	8 cut(s)	74, 80, 132, 179, 222, 248, 263, 318
AclWI	GGATC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	136, 289
AcyI	GRCGYC	2 cut(s)	269, 362
AfiI	CCNNNNNNNGG	4 cut(s)	11, 61, 188, 228
AflIII	ACRYGT	1 cut(s)	407
AhdI	GACNNNNNGTC	1 cut(s)	107
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	3 cut(s)	171, 243, 393
AluI	AGCT	3 cut(s)	171, 243, 393
AlwI	GGATC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	136, 289
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	3 cut(s)	252, 271, 354
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	2 cut(s)	76, 268
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	2 cut(s)	210, 357
BciT130I	CCWGG	1 cut(s)	157
BfaI	CTAG	2 cut(s)	183, 240
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	3 cut(s)	75, 248, 321
BlsI	GCNGC	3 cut(s)	76, 249, 322
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	231
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	5 cut(s)	78, 177, 198, 270, 382
BmrFI	CCNGG	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	339
BsaHI	GRCGYC	2 cut(s)	269, 362
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 61, 188, 228
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	286, 384
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	4 cut(s)	11, 61, 188, 228
BseNI	ACTGG	2 cut(s)	286, 384
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	4 cut(s)	224, 250, 352, 400
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	2 cut(s)	76, 268
BsiSI	CCGG	2 cut(s)	266, 272
BslI	CCNNNNNNNGG	4 cut(s)	11, 61, 188, 228
BsnI	GGCC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	326
Bsp68I	TCGCGA	1 cut(s)	400
BspACI	CCGC	8 cut(s)	74, 80, 132, 179, 222, 248, 263, 318
BspANI	GGCC	1 cut(s)	337
BspFNI	CGCG	4 cut(s)	224, 250, 352, 400
BspLI	GGNNCC	5 cut(s)	78, 177, 198, 270, 382
BspPI	GGATC	1 cut(s)	321
BspQI	GCTCTTC	1 cut(s)	400
BspT107I	GGYRCC	2 cut(s)	76, 268
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	286, 384
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	326
BssNI	GRCGYC	2 cut(s)	269, 362
BssSI	CACGAG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	300, 400
BstACI	GRCGYC	2 cut(s)	269, 362
BstC8I	GCNNGC	4 cut(s)	89, 245, 267, 370
BstDSI	CCRYGG	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	4 cut(s)	224, 250, 352, 400
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	3 cut(s)	252, 271, 354
BstKTI	GATC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 249, 365
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstUI	CGCG	4 cut(s)	224, 250, 352, 400
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	279, 391
BtuMI	TCGCGA	1 cut(s)	400
Cac8I	GCNNGC	4 cut(s)	89, 245, 267, 370
CfoI	GCGC	3 cut(s)	252, 271, 354
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	213
CviAII	CATG	1 cut(s)	228
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DrdI	GACNNNNNNGTC	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	300, 400
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	2 cut(s)	300, 400
EciI	GGCGGA	3 cut(s)	147, 168, 252
Eco47I	GGWCC	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
FaeI	CATG	1 cut(s)	231
FaiI	YATR	7 cut(s)	12, 93, 95, 105, 129, 229, 421
FatI	CATG	1 cut(s)	227
FauI	CCCGC	2 cut(s)	229, 325
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	75, 248, 321
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	75, 248, 321
FspBI	CTAG	2 cut(s)	183, 240
GlaI	GCGC	3 cut(s)	251, 270, 353
GluI	GCNGC	3 cut(s)	75, 248, 321
GsaI	CCCAGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	2 cut(s)	266, 272
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	3 cut(s)	252, 271, 354
Hin1I	GRCGYC	2 cut(s)	269, 362
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	3 cut(s)	250, 269, 352
HinP1I	GCGC	3 cut(s)	250, 269, 352
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	211, 340
HpaII	CCGG	2 cut(s)	266, 272
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	141, 399
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	3 cut(s)	125, 364, 367
HpyCH4IV	ACGT	3 cut(s)	108, 362, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 249, 365
HpySE526I	ACGT	3 cut(s)	108, 362, 409
Hsp92I	GRCGYC	2 cut(s)	269, 362
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	3 cut(s)	250, 269, 352
KasI	GGCGCC	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	326
LguI	GCTCTTC	1 cut(s)	400
LmnI	GCTCC	3 cut(s)	181, 202, 380
Lsp1109I	GCAGC	1 cut(s)	332
MaeI	CTAG	2 cut(s)	183, 240
MaeII	ACGT	3 cut(s)	108, 362, 409
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	4 cut(s)	287, 295, 339, 387
MluCI	AATT	6 cut(s)	7, 65, 136, 161, 289, 414
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	205, 334
MnlI	CCTC	4 cut(s)	214, 244, 340, 371
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	394
MspI	CCGG	2 cut(s)	266, 272
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	4 cut(s)	224, 250, 352, 400
MwoI	GCNNNNNNNGC	3 cut(s)	88, 249, 365
NaeI	GCCGGC	1 cut(s)	267
NarI	GGCGCC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	1 cut(s)	326
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	5 cut(s)	78, 177, 198, 270, 382
NmeAIII	GCCGAG	1 cut(s)	152
NruI	TCGCGA	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	394
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	76, 249, 322
PleI	GAGTC	2 cut(s)	205, 334
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	205, 334
Psp6I	CCWGG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	5 cut(s)	78, 177, 198, 270, 382
PspPI	GGNCC	1 cut(s)	231
PsyI	GACNNNGTC	1 cut(s)	343
RruI	TCGCGA	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	400
SatI	GCNGC	3 cut(s)	75, 248, 321
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	205, 334
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	7 cut(s)	111, 173, 241, 245, 365, 395, 412
SfoI	GGCGCC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	6 cut(s)	7, 65, 136, 161, 289, 414
SsiI	CCGC	8 cut(s)	74, 80, 132, 179, 222, 248, 263, 318
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	183, 240
StyD4I	CCNGG	1 cut(s)	155
TaiI	ACGT	3 cut(s)	111, 365, 412
TasI	AATT	6 cut(s)	7, 65, 136, 161, 289, 414
TauI	GCSGC	2 cut(s)	77, 250
TscAI	CASTG	2 cut(s)	286, 391
TseI	GCWGC	1 cut(s)	320
TspGWI	ACGGA	3 cut(s)	77, 189, 296
TspRI	CASTG	2 cut(s)	286, 391
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	136, 289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	2 cut(s)	183, 240
ZraI	GACGTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.