Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Reverse (-)

55988179 .. 55988952

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTCCTCACTGAACTCGCCGTGCTCTACTTCTCCGGCGGCGCCGGCAACTGGTGGCTTAAATTCTCTTCCAATCTTCCATTACGTCCTGGGACGAATTTGTCGAACGATCCGTGCAGTTGTTCTGCAACAATCCTGATTCGTTACCATTTCGAAGCTGAGGAGCTTACAGATGTGGATGAGGCTCGAGAAGCAAGAGTGGGGGACGTGTTCGACAGTTTGAAACGGCCTCGTTTGGTTCGCTGGGAGCAAGATCTTAATGATTGGGGGTTTGAAGTCCTCATTTTCGCTGAACTCGGCATGCTCGATGATTCTGATACTGAGGCTGGATTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

113

Amino Acids

12.72

Weight (kDa)

4.35

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	62, 97
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	223, 275
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	158, 166
AluI	AGCT	2 cut(s)	158, 166
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	62, 97
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	159
BceAI	ACGGC	2 cut(s)	5, 242
BciT130I	CCWGG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	45
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	150, 312
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	36, 45
BslFI	GGGAC	2 cut(s)	106, 218
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	106, 218
BsnI	GGCC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	109, 253
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	151, 313
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	109, 253
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	46, 302
BstDEI	CTNAG	2 cut(s)	159, 321
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	112, 256
BstMBI	GATC	2 cut(s)	109, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 191
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	2 cut(s)	46, 302
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	6 cut(s)	58, 158, 166, 185, 229, 326
CviKI_1	RGCY	6 cut(s)	58, 158, 166, 185, 229, 326
DdeI	CTNAG	2 cut(s)	159, 321
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	2 cut(s)	111, 255
DpnII	GATC	2 cut(s)	109, 253
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	88
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	1 cut(s)	304
FaiI	YATR	1 cut(s)	302
FaqI	GGGAC	2 cut(s)	106, 218
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	40
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	40
GsaI	CCCAGC	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	2 cut(s)	36, 45
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	139, 311
HpaII	CCGG	2 cut(s)	36, 45
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	136, 188
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	85, 207
HpyCH4V	TGCA	2 cut(s)	117, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 191
HpyF3I	CTNAG	2 cut(s)	159, 321
HpySE526I	ACGT	2 cut(s)	85, 207
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	109, 253
LmnI	GCTCC	2 cut(s)	163, 247
LpnPI	CCDG	8 cut(s)	37, 49, 58, 75, 102, 149, 229, 312
MaeII	ACGT	2 cut(s)	85, 207
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	111, 255
MboI	GATC	2 cut(s)	109, 253
MboII	GAAGA	2 cut(s)	60, 68
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	62, 97
Mly113I	GGCGCC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	17, 154, 175, 240, 290, 316
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	2 cut(s)	60, 258
MspI	CCGG	2 cut(s)	36, 45
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	45, 191
NaeI	GCCGGC	1 cut(s)	46
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	2 cut(s)	109, 253
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	276
NspI	RCATGY	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	3 cut(s)	101, 110, 303
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	139, 311
PkrI	GCNGC	1 cut(s)	41
PluTI	GGCGCC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	60, 258
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	109, 253
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	88, 160, 168, 210
SfoI	GGCGCC	1 cut(s)	43
Sfr274I	CTCGAG	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	304
Sse9I	AATT	2 cut(s)	62, 97
SsiI	CCGC	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	88, 210
TaqI	TCGA	5 cut(s)	104, 153, 187, 213, 306
TasI	AATT	2 cut(s)	62, 97
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	139, 311
Tru1I	TTAA	2 cut(s)	60, 258
Tru9I	TTAA	2 cut(s)	60, 258
TscAI	CASTG	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	62, 97
XceI	RCATGY	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.