FvH4_2g14200

SKP1-interacting partner

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
12457801 .. 12464182
6382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14200.t2

Sequence Viewer

Length: 1203 bp
ATGGGGTTCACTAGGATACAAAGAAAGACATACTCTAGCCCGAAACAGAAACCCCAAGTCATTTCATTTCAACCAGAGTCTTCATCCTTCTCCTCTCTCTCTTCACTCTCTCCCTATTCCGATCCAGTTCCATGGAGTCCCTCCCCCGCGACGCCCTCCACCACATCTTCTCCCTCCTCCCCCTCCGCCAGATCATCATCTGCCGCTGCGTCAGCAAGCACCTCCACCACCTCCTCACCTCCCCCTCCTTCCTCTCCTCCCCCTCCCTCCCTCCACCTCCTCGCCCTCCGGCCTCCCCACCACCGCCACCACCACCACCACCTCTCCTCCCTCCACCTCTTCGACCCTTCCCTCCACCGCTGGCTCCGCTTCTCCCTCGACTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCCGGCCTCCTCTACCTCTGGGCCGACTCCCCCTCCGACTCCTCCAAGTCCCTCCTCCTCTGCAACCCCCTCACGCGCCGCTTCCGCGCGTTGCCCCAGCTCGGCTCCGCCTGGTCAAGACACGGCTCCGTCCTCGTTGACTCCGCCGGACGCGTCATGGTCCTCACCGAGCTCGCCGCGCTCTACTTCTCCGCCGGAGAGGACGACCGCTGGCTCAAATTCTCCTCCAATCTCCCGTCCAAGCCGCGCAGCCCGATCCTGGCGGCGGAGGAGTCGGTCTTCGCTCTCTGCGACGTCGGCTCGCCGTGGCGGAGCCAGTGGAAGCTCTTCGCCTGCACCGTTTCGAAGCTGCGGAGCTCGCAGCAGTGGACGAGGCTGGAGAAGCCGGAGTGGGGGGACGTGTTTGATATCTTGAAACGGCCGCGTTTGGTGAAAGGAAATGGCAGCAAGATTCTGATGGTTGGCGGTTTGAAGTCGTCGTTTTCGCTCAACTCGTCGTGCTCGACGATTCTGATACTGAGGCTCGATTTGGAGAGCTGGGAGTGGGACGAGGCCGGGCGGATGCCGGTGGAGATGTTTAAGTGTTTTCAGGAGTGTAGCAAGTTCAAGGTGTTTGGTGGAGGCGACAGGGTTTGCTTTTCGGCCAAGAGGTTGGGGAAGTTGGCTTTGTGGGACAATTGTGAAGGGAAAGCAGAGTGGAAGTGGATTGAAGGCGTTCCCGGGAGTGGCGATGGGCTTTGCAGGGGGTTTGTTTTCGAGGCCAGGCTTACCCCATTGCCTTGA

Protein Analysis

401

Amino Acids

44.19

Weight (kDa)

9.52

Isoelectric Point (pI)

73.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 118 - 328 7.6e-08 KIB1-4 beta-propeller
Kelch_2 PF07646 286 - 329 7.1e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 396
AccII CGCG 8 cut(s) 149, 496, 507, 509, 573, 599, 667, 844
AclWI GGATC 2 cut(s) 116, 670
AcoI YGGCCR 2 cut(s) 839, 1062
AcsI RAATTY 1 cut(s) 638
AcyI GRCGYC 2 cut(s) 152, 714
AfiI CCNNNNNNNGG 5 cut(s) 521, 679, 685, 812, 1145
AflIII ACRYGT 2 cut(s) 571, 819
AgsI TTSAA 5 cut(s) 71, 835, 892, 1027, 1130
AjiI CACGTC 1 cut(s) 820
AjnI CCWGG 3 cut(s) 530, 678, 1181
AluBI AGCT 6 cut(s) 520, 592, 745, 769, 777, 957
AluI AGCT 6 cut(s) 520, 592, 745, 769, 777, 957
Alw21I GWGCWC 3 cut(s) 594, 779, 923
AlwI GGATC 2 cut(s) 116, 670
Ama87I CYCGRG 1 cut(s) 1139
AoxI GGCC 7 cut(s) 290, 424, 441, 839, 972, 1062, 1179
ApeKI GCWGC 5 cut(s) 206, 669, 769, 781, 864
ApoI RAATTY 1 cut(s) 638
Asp700I GAANNNNTTC 2 cut(s) 746, 1134
AspLEI GCGC 4 cut(s) 498, 509, 601, 669
AspS9I GGNCC 2 cut(s) 441, 580
AsuC2I CCSGG 3 cut(s) 976, 1140, 1141
AsuHPI GGTGA 3 cut(s) 228, 577, 862
AsuII TTCGAA 1 cut(s) 764
AvaI CYCGRG 1 cut(s) 1139
AvaII GGWCC 1 cut(s) 580
BanII GRGCYC 2 cut(s) 594, 779
BbsI GAAGAC 2 cut(s) 72, 691
Bbv12I GWGCWC 3 cut(s) 594, 779, 923
BbvI GCAGC 5 cut(s) 193, 681, 756, 793, 876
BccI CCATC 2 cut(s) 871, 1145
BceAI ACGGC 3 cut(s) 559, 709, 854
BciT130I CCWGG 3 cut(s) 532, 680, 1183
BciVI GTATCC 1 cut(s) 9
BcnI CCSGG 3 cut(s) 976, 1140, 1141
BfaI CTAG 2 cut(s) 12, 36
BfuI GTATCC 1 cut(s) 9
Bme1390I CCNGG 6 cut(s) 532, 680, 976, 1140, 1141, 1183
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 1139
BmgBI CACGTC 1 cut(s) 820
BmgT120I GGNCC 2 cut(s) 441, 580
BmiI GGNNCC 4 cut(s) 365, 526, 547, 734
BmrFI CCNGG 6 cut(s) 532, 680, 976, 1140, 1141, 1183
BmsI GCATC 1 cut(s) 972
BpiI GAAGAC 2 cut(s) 72, 691
BpmI CTGGAG 1 cut(s) 818
Bpu14I TTCGAA 1 cut(s) 764
BpuMI CCSGG 3 cut(s) 976, 1140, 1141
BsaBI GATNNNNATC 1 cut(s) 196
BsaHI GRCGYC 2 cut(s) 152, 714
BsaJI CCNNGG 3 cut(s) 131, 725, 1139
BsaXI ACNNNNNCTCC 8 cut(s) 154, 184, 308, 311, 338, 341, 437, 467
Bsc4I CCNNNNNNNGG 5 cut(s) 521, 679, 685, 812, 1145
Bse118I RCCGGY 1 cut(s) 985
Bse1I ACTGG 2 cut(s) 125, 736
Bse3DI GCAATG 1 cut(s) 1193
Bse8I GATNNNNATC 1 cut(s) 196
BseBI CCWGG 3 cut(s) 532, 680, 1183
BseDI CCNNGG 3 cut(s) 131, 725, 1139
BseGI GGATG 2 cut(s) 83, 987
BseJI GATNNNNATC 1 cut(s) 196
BseLI CCNNNNNNNGG 5 cut(s) 521, 679, 685, 812, 1145
BseMI GCAATG 1 cut(s) 1193
BseMII CTCAG 1 cut(s) 929
BseNI ACTGG 2 cut(s) 125, 736
BseX3I CGGCCG 1 cut(s) 839
BseXI GCAGC 5 cut(s) 193, 681, 756, 793, 876
BseYI CCCAGC 2 cut(s) 516, 957
BsgI GTGCAG 1 cut(s) 739
Bsh1236I CGCG 8 cut(s) 149, 496, 507, 509, 573, 599, 667, 844
Bsh1285I CGRYCG 2 cut(s) 628, 842
BshFI GGCC 7 cut(s) 292, 426, 443, 841, 974, 1064, 1181
BsiEI CGRYCG 2 cut(s) 628, 842
BsiHKAI GWGCWC 3 cut(s) 594, 779, 923
BsiHKCI CYCGRG 1 cut(s) 1139
BsiSI CCGG 8 cut(s) 289, 423, 567, 615, 806, 975, 986, 1140
BslFI GGGAC 5 cut(s) 123, 454, 830, 980, 1106
BslI CCNNNNNNNGG 5 cut(s) 521, 679, 685, 812, 1145
BsmFI GGGAC 5 cut(s) 123, 454, 830, 980, 1106
BsnI GGCC 7 cut(s) 292, 426, 443, 841, 974, 1064, 1181
BsoBI CYCGRG 1 cut(s) 1139
Bsp119I TTCGAA 1 cut(s) 764
Bsp1286I GDGCHC 3 cut(s) 594, 779, 923
Bsp143I GATC 3 cut(s) 121, 191, 675
Bsp19I CCATGG 1 cut(s) 131
BspANI GGCC 7 cut(s) 292, 426, 443, 841, 974, 1064, 1181
BspCNI CTCAG 1 cut(s) 930
BspFNI CGCG 8 cut(s) 149, 496, 507, 509, 573, 599, 667, 844
BspLI GGNNCC 4 cut(s) 365, 526, 547, 734
BspPI GGATC 2 cut(s) 116, 670
BspQI GCTCTTC 1 cut(s) 752
BspT104I TTCGAA 1 cut(s) 764
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 1193
BsrFI RCCGGY 1 cut(s) 985
BsrI ACTGG 2 cut(s) 125, 736
BssAI RCCGGY 1 cut(s) 985
BssECI CCNNGG 3 cut(s) 131, 725, 1139
BssMI GATC 3 cut(s) 121, 191, 675
BssNI GRCGYC 2 cut(s) 152, 714
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 3 cut(s) 532, 680, 1183
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 3 cut(s) 106, 344, 752
BstACI GRCGYC 2 cut(s) 152, 714
BstBI TTCGAA 1 cut(s) 764
BstC8I GCNNGC 7 cut(s) 217, 362, 594, 632, 722, 754, 779
BstDEI CTNAG 1 cut(s) 938
BstDSI CCRYGG 2 cut(s) 131, 725
BstF5I GGATG 2 cut(s) 83, 987
BstFNI CGCG 8 cut(s) 149, 496, 507, 509, 573, 599, 667, 844
BstHHI GCGC 4 cut(s) 498, 509, 601, 669
BstKTI GATC 3 cut(s) 124, 194, 678
BstMBI GATC 3 cut(s) 121, 191, 675
BstMCI CGRYCG 2 cut(s) 628, 842
BstMWI GCNNNNNNNGC 7 cut(s) 212, 366, 504, 598, 717, 778, 802
BstNI CCWGG 3 cut(s) 532, 680, 1183
BstSCI CCNGG 6 cut(s) 530, 678, 974, 1138, 1139, 1181
BstUI CGCG 8 cut(s) 149, 496, 507, 509, 573, 599, 667, 844
BstV1I GCAGC 5 cut(s) 193, 681, 756, 793, 876
BstV2I GAAGAC 2 cut(s) 72, 691
BstXI CCANNNNNNTGG 2 cut(s) 132, 1072
BstZI CGGCCG 1 cut(s) 839
BsuI GTATCC 1 cut(s) 9
BsuRI GGCC 7 cut(s) 292, 426, 443, 841, 974, 1064, 1181
BtgI CCRYGG 2 cut(s) 131, 725
BtgZI GCGATG 1 cut(s) 1164
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 2 cut(s) 83, 987
BtsI GCAGTG 1 cut(s) 791
BtsIMutI CAGTG 2 cut(s) 743, 791
Cac8I GCNNGC 7 cut(s) 217, 362, 594, 632, 722, 754, 779
CfoI GCGC 4 cut(s) 498, 509, 601, 669
Cfr10I RCCGGY 1 cut(s) 985
Cfr13I GGNCC 2 cut(s) 441, 580
Cfr9I CCCGGG 1 cut(s) 1139
CseI GACGC 4 cut(s) 160, 198, 562, 579
CviAII CATG 2 cut(s) 132, 577
DdeI CTNAG 1 cut(s) 938
DpnI GATC 3 cut(s) 123, 193, 677
DpnII GATC 3 cut(s) 121, 191, 675
EaeI YGGCCR 2 cut(s) 839, 1062
EagI CGGCCG 1 cut(s) 839
Eam1104I CTCTTC 3 cut(s) 106, 344, 752
EarI CTCTTC 3 cut(s) 106, 344, 752
EciI GGCGGA 7 cut(s) 175, 517, 553, 601, 701, 745, 994
Ecl136II GAGCTC 2 cut(s) 592, 777
EclXI CGGCCG 1 cut(s) 839
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 2 cut(s) 594, 779
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 580
Eco52I CGGCCG 1 cut(s) 839
Eco53kI GAGCTC 2 cut(s) 592, 777
Eco88I CYCGRG 1 cut(s) 1139
EcoICRI GAGCTC 2 cut(s) 592, 777
EcoRII CCWGG 3 cut(s) 530, 678, 1181
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 2 cut(s) 594, 779
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 135, 580
FaiI YATR 3 cut(s) 31, 133, 578
FaqI GGGAC 5 cut(s) 123, 454, 830, 980, 1106
FatI CATG 2 cut(s) 131, 576
FauI CCCGC 1 cut(s) 154
FokI GGATG 2 cut(s) 70, 994
FriOI GRGCYC 2 cut(s) 594, 779
FspBI CTAG 2 cut(s) 12, 36
GlaI GCGC 4 cut(s) 497, 508, 600, 668
GsaI CCCAGC 2 cut(s) 520, 961
GsuI CTGGAG 1 cut(s) 818
HaeIII GGCC 7 cut(s) 292, 426, 443, 841, 974, 1064, 1181
HapII CCGG 8 cut(s) 289, 423, 567, 615, 806, 975, 986, 1140
HgaI GACGC 4 cut(s) 160, 198, 562, 579
HhaI GCGC 4 cut(s) 498, 509, 601, 669
Hin1I GRCGYC 2 cut(s) 152, 714
Hin1II CATG 2 cut(s) 135, 580
Hin6I GCGC 4 cut(s) 496, 507, 599, 667
HinP1I GCGC 4 cut(s) 496, 507, 599, 667
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 8 cut(s) 77, 136, 446, 458, 560, 692, 871, 928
HpaII CCGG 8 cut(s) 289, 423, 567, 615, 806, 975, 986, 1140
HphI GGTGA 3 cut(s) 228, 577, 862
Hpy166II GTNNAC 3 cut(s) 9, 559, 789
Hpy188I TCNGA 4 cut(s) 121, 457, 876, 933
Hpy188III TCNNGA 3 cut(s) 537, 832, 1010
Hpy8I GTNNAC 3 cut(s) 9, 559, 789
Hpy99I CGWCG 7 cut(s) 154, 413, 716, 719, 901, 919, 928
HpyAV CCTTC 6 cut(s) 97, 258, 357, 400, 1097, 1124
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 2 cut(s) 714, 819
HpyCH4V TGCA 3 cut(s) 483, 756, 1161
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 366, 504, 598, 717, 778, 802
HpyF3I CTNAG 1 cut(s) 938
HpySE526I ACGT 2 cut(s) 714, 819
Hsp92I GRCGYC 2 cut(s) 152, 714
Hsp92II CATG 2 cut(s) 135, 580
HspAI GCGC 4 cut(s) 496, 507, 599, 667
Kzo9I GATC 3 cut(s) 121, 191, 675
LguI GCTCTTC 1 cut(s) 752
LmnI GCTCC 6 cut(s) 369, 401, 530, 551, 732, 774
Lsp1109I GCAGC 5 cut(s) 193, 681, 756, 793, 876
LweI GCATC 1 cut(s) 972
MaeI CTAG 2 cut(s) 12, 36
MaeII ACGT 2 cut(s) 714, 819
MalI GATC 3 cut(s) 123, 193, 677
MbiI CCGCTC 1 cut(s) 396
MboI GATC 3 cut(s) 121, 191, 675
MboII GAAGA 6 cut(s) 72, 93, 159, 331, 691, 739
MfeI CAATTG 1 cut(s) 1096
MhlI GDGCHC 3 cut(s) 594, 779, 923
MluCI AATT 2 cut(s) 638, 1096
MluI ACGCGT 1 cut(s) 571
MlyI GAGTC 6 cut(s) 86, 145, 440, 452, 554, 701
MmeI TCCRAC 1 cut(s) 480
MroXI GAANNNNTTC 2 cut(s) 746, 1134
MseI TTAA 1 cut(s) 999
MspA1I CMGCKG 3 cut(s) 206, 360, 630
MspI CCGG 8 cut(s) 289, 423, 567, 615, 806, 975, 986, 1140
MspR9I CCNGG 6 cut(s) 532, 680, 976, 1140, 1141, 1183
MunI CAATTG 1 cut(s) 1096
MvaI CCWGG 3 cut(s) 532, 680, 1183
MvnI CGCG 8 cut(s) 149, 496, 507, 509, 573, 599, 667, 844
MwoI GCNNNNNNNGC 7 cut(s) 212, 366, 504, 598, 717, 778, 802
NciI CCSGG 3 cut(s) 976, 1140, 1141
NcoI CCATGG 1 cut(s) 131
NdeII GATC 3 cut(s) 121, 191, 675
NlaIII CATG 2 cut(s) 135, 580
NlaIV GGNNCC 4 cut(s) 365, 526, 547, 734
NmeAIII GCCGAG 1 cut(s) 501
NspV TTCGAA 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 752
PcsI WCGNNNNNNNCGW 5 cut(s) 708, 756, 911, 920, 923
PdmI GAANNNNTTC 2 cut(s) 746, 1134
PfeI GAWTC 2 cut(s) 871, 928
PleI GAGTC 6 cut(s) 85, 144, 440, 452, 554, 700
PpsI GAGTC 6 cut(s) 85, 144, 440, 452, 554, 700
Psp124BI GAGCTC 2 cut(s) 594, 779
Psp6I CCWGG 3 cut(s) 530, 678, 1181
PspFI CCCAGC 2 cut(s) 516, 957
PspGI CCWGG 3 cut(s) 530, 678, 1181
PspN4I GGNNCC 4 cut(s) 365, 526, 547, 734
PspPI GGNCC 2 cut(s) 441, 580
SacI GAGCTC 2 cut(s) 594, 779
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 1 cut(s) 999
Sau3AI GATC 3 cut(s) 121, 191, 675
Sau96I GGNCC 2 cut(s) 441, 580
SchI GAGTC 6 cut(s) 86, 145, 440, 452, 554, 701
ScrFI CCNGG 6 cut(s) 532, 680, 976, 1140, 1141, 1183
SduI GDGCHC 3 cut(s) 594, 779, 923
SfaNI GCATC 1 cut(s) 972
SfuI TTCGAA 1 cut(s) 764
SinI GGWCC 1 cut(s) 580
SmaI CCCGGG 1 cut(s) 1141
Sse9I AATT 2 cut(s) 638, 1096
SspMI CTAG 2 cut(s) 12, 36
SstI GAGCTC 2 cut(s) 594, 779
StyD4I CCNGG 6 cut(s) 530, 678, 974, 1138, 1139, 1181
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 2 cut(s) 717, 822
TaqI TCGA 6 cut(s) 342, 378, 764, 923, 945, 1176
TaqII GACCGA 1 cut(s) 685
TasI AATT 2 cut(s) 638, 1096
TauI GCSGC 6 cut(s) 206, 501, 599, 667, 686, 844
TfiI GAWTC 2 cut(s) 871, 928
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TscAI CASTG 2 cut(s) 743, 791
TseI GCWGC 5 cut(s) 206, 669, 769, 781, 864
TspDTI ATGAA 2 cut(s) 54, 72
TspGWI ACGGA 1 cut(s) 538
TspMI CCCGGG 1 cut(s) 1139
TspRI CASTG 2 cut(s) 743, 791
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 1 cut(s) 638
XmaI CCCGGG 1 cut(s) 1139
XmnI GAANNNNTTC 2 cut(s) 746, 1134
XspI CTAG 2 cut(s) 12, 36
ZraI GACGTC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.