pycom05g01240

SKP1-interacting partner

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
1607445 .. 1608852
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01240.1

Sequence Viewer

Length: 1272 bp
ATGATAGCTCTCTTATTTTATTTTATTTTTTTAATAAAACAAGTCTCTTATTACAACAACCAATACTTGCGTCTTTTTTCCACGCAGCCCACAATCCACCATTTGATTCAACTGCGTTTCTCTGTGTCTCACTCTGAGTCTTCGATCTGTGCATTTCCTCTTGTCCAGTTCTCCGGCAGCCCACCGCAAAAAGCCATGGACGCTCTCCCGCAGGACACGCTCCACCAGATCTTCTCGAGCCTTCCCCTCCGTCAGATCATGATCTGCCGCTCACTCTCCAAGTTCTTCAACCAACTCCTCACCTCACCCTCCTTCCTCCACCTCATCTCCACCCAATCTCCGCCCCTCAACCTCCTCGCCCTCCGCCCTCCCCACCACCGGCACCTGTCCTCCCCATCCTGCCTCCACGTCTTCGACCCCGACCTCAACCAATGGCTCAGATTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCACACCCCGTCGCCTCCTCACTCGGCCTCGTCTACCTCTGGGGCGACTCGCCCGACCCGCCCGAGTCAACCAAGTCACTCGTCGTCTGCAACCCTCTGACTCGCCAGTTCCGAGTCCTCCCTCAGCTCGGCTCAGCCTGGTCGCGACACGGCTCGGTCCTCGTTGACTCCCAAACCCGAGTCATGGTCCTCACTGAGCTCGCTGCACTCTACTTCTCCGGTTCGAACCAGTGGCTCAAGTTCTCATCGAACCTCCCTTCAAAACCCAGAAGCCCAATTTTGGTGTTCGACTCGGTTTACGCCCTGTGCGATGTGGGTTCGCCGTGGCGGTGTCAATGGAAGCTGTTCCATTGCACAATTTCGAAGCTTAAGACCTCGCAGACGTGGACTCGGCTCGAAAAGCACGAGTGGGGGGACGTCTTCGACATCCTGAAGCGACCCCGTTTGGTTCGGGGGAATGGAAACAAGGTGCTGATGGTTGGTGGGTTGAAGTCTTCTTTCTTGCTCAACGCTTCGTGTTCGACGATTTTGATTCTGCGGCTGGACTTGGATAGCTTGGAGTGGGACGAGGCGGGCCGAATGCCGGTGGAGATGTTCAGGTGCTTTCAAGAGTCGAGCAAGTTCAAGGTGTTTGGTGGCGGCGATAAGGTTTGTTTTTCGGCAAAGAGAATTGGGAGATTGGCTTTGTGGGACCGTTGTTCCGGGAAAGCCGAGTGGCGGTGGATTGATGGGGTTCCCGGAAGTGGCGATGGGCTTTCCCGCGGTTTCGTTTTTGAGGCCACGCTCACTGCATTTCCGTGA

Protein Analysis

424

Amino Acids

47.99

Weight (kDa)

9.4

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 68 - 107 8e-07 F-box domain
Beta-prop_KIB1-4 PF03478 147 - 351 5.2e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 381
AccBSI CCGCTC 2 cut(s) 270, 468
AccI GTMKAC 1 cut(s) 504
AccII CGCG 2 cut(s) 616, 1233
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 888
AfiI CCNNNNNNNGG 7 cut(s) 378, 599, 655, 751, 1054, 1188, 1214
AflII CTTAAG 1 cut(s) 839
AgsI TTSAA 6 cut(s) 110, 289, 732, 961, 1079, 1096
AjiI CACGTC 2 cut(s) 409, 855
AjnI CCWGG 1 cut(s) 608
AluBI AGCT 6 cut(s) 8, 598, 670, 814, 838, 1026
AluI AGCT 6 cut(s) 8, 598, 670, 814, 838, 1026
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 2 cut(s) 49, 132
Ama87I CYCGRG 3 cut(s) 235, 533, 648
AoxI GGCC 3 cut(s) 496, 1045, 1248
ApeKI GCWGC 3 cut(s) 85, 177, 674
Asp700I GAANNNNTTC 1 cut(s) 815
AspS9I GGNCC 4 cut(s) 628, 658, 1045, 1162
AsuC2I CCSGG 2 cut(s) 1174, 1209
AsuHPI GGTGA 2 cut(s) 292, 297
AsuII TTCGAA 2 cut(s) 695, 833
AvaI CYCGRG 3 cut(s) 235, 533, 648
AvaII GGWCC 3 cut(s) 628, 658, 1162
BanI GGYRCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 672
BauI CACGAG 1 cut(s) 875
BbsI GAAGAC 4 cut(s) 132, 403, 883, 957
Bbv12I GWGCWC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 97, 189, 661
BccI CCATC 4 cut(s) 403, 940, 1193, 1214
BceAI ACGGC 2 cut(s) 637, 778
BciT130I CCWGG 1 cut(s) 610
BcnI CCSGG 2 cut(s) 1174, 1209
BcoDI GTCTC 2 cut(s) 49, 132
BfrI CTTAAG 1 cut(s) 839
BglII AGATCT 1 cut(s) 228
BisI GCNGC 6 cut(s) 86, 178, 268, 675, 1010, 1111
BlpI GCTNAGC 1 cut(s) 604
BlsI GCNGC 6 cut(s) 87, 179, 269, 676, 1011, 1112
Bme1390I CCNGG 3 cut(s) 610, 1174, 1209
Bme18I GGWCC 3 cut(s) 628, 658, 1162
BmeT110I CYCGRG 3 cut(s) 235, 533, 648
BmgBI CACGTC 2 cut(s) 409, 855
BmgT120I GGNCC 4 cut(s) 628, 658, 1045, 1162
BmiI GGNNCC 3 cut(s) 383, 1163, 1206
BmrFI CCNGG 3 cut(s) 610, 1174, 1209
BpiI GAAGAC 4 cut(s) 132, 403, 883, 957
Bpu10I CCTNAGC 1 cut(s) 594
Bpu1102I GCTNAGC 1 cut(s) 604
Bpu14I TTCGAA 2 cut(s) 695, 833
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 2 cut(s) 1174, 1209
BsaBI GATNNNNATC 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 3 cut(s) 195, 794, 1231
BsaWI WCCGGW 1 cut(s) 689
BsaXI ACNNNNNCTCC 6 cut(s) 311, 322, 341, 352, 374, 404
Bsc4I CCNNNNNNNGG 7 cut(s) 378, 599, 655, 751, 1054, 1188, 1214
Bse118I RCCGGY 2 cut(s) 378, 1054
Bse1I ACTGG 3 cut(s) 166, 577, 700
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 260
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 3 cut(s) 195, 794, 1231
BseGI GGATG 2 cut(s) 395, 897
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 7 cut(s) 378, 599, 655, 751, 1054, 1188, 1214
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 5 cut(s) 126, 451, 608, 618, 657
BseNI ACTGG 3 cut(s) 166, 577, 700
BseRI GAGGAG 3 cut(s) 287, 344, 478
BseXI GCAGC 3 cut(s) 97, 189, 661
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 2 cut(s) 616, 1233
BshFI GGCC 3 cut(s) 498, 1047, 1250
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 3 cut(s) 235, 533, 648
BsiSI CCGG 6 cut(s) 174, 379, 690, 1055, 1173, 1209
BslFI GGGAC 3 cut(s) 899, 1049, 1175
BslI CCNNNNNNNGG 7 cut(s) 378, 599, 655, 751, 1054, 1188, 1214
BsmAI GTCTC 2 cut(s) 49, 132
BsmFI GGGAC 3 cut(s) 899, 1049, 1175
BsmI GAATGC 1 cut(s) 1056
BsnI GGCC 3 cut(s) 498, 1047, 1250
BsoBI CYCGRG 3 cut(s) 235, 533, 648
Bsp119I TTCGAA 2 cut(s) 695, 833
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 4 cut(s) 144, 228, 255, 261
Bsp1720I GCTNAGC 1 cut(s) 604
Bsp19I CCATGG 1 cut(s) 195
Bsp68I TCGCGA 1 cut(s) 616
BspANI GGCC 3 cut(s) 498, 1047, 1250
BspCNI CTCAG 5 cut(s) 127, 450, 607, 617, 658
BspFNI CGCG 2 cut(s) 616, 1233
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 383, 1163, 1206
BspT104I TTCGAA 2 cut(s) 695, 833
BspT107I GGYRCC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 839
BsrBI CCGCTC 2 cut(s) 270, 468
BsrDI GCAATG 1 cut(s) 820
BsrFI RCCGGY 2 cut(s) 378, 1054
BsrI ACTGG 3 cut(s) 166, 577, 700
BssAI RCCGGY 2 cut(s) 378, 1054
BssECI CCNNGG 3 cut(s) 195, 794, 1231
BssMI GATC 4 cut(s) 144, 228, 255, 261
BssNI GRCGYC 1 cut(s) 888
BssSI CACGAG 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 875
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 1 cut(s) 1166
BstACI GRCGYC 1 cut(s) 888
BstAFI CTTAAG 1 cut(s) 839
BstBI TTCGAA 2 cut(s) 695, 833
BstC8I GCNNGC 2 cut(s) 672, 1045
BstDEI CTNAG 5 cut(s) 135, 437, 594, 604, 666
BstDSI CCRYGG 3 cut(s) 195, 794, 1231
BstF5I GGATG 2 cut(s) 395, 897
BstFNI CGCG 2 cut(s) 616, 1233
BstKTI GATC 4 cut(s) 147, 231, 258, 264
BstMAI GTCTC 2 cut(s) 49, 132
BstMBI GATC 4 cut(s) 144, 228, 255, 261
BstMWI GCNNNNNNNGC 4 cut(s) 200, 217, 529, 871
BstNI CCWGG 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 608, 1172, 1207
BstUI CGCG 2 cut(s) 616, 1233
BstV1I GCAGC 3 cut(s) 97, 189, 661
BstV2I GAAGAC 4 cut(s) 132, 403, 883, 957
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 3 cut(s) 498, 1047, 1250
BtgI CCRYGG 3 cut(s) 195, 794, 1231
BtgZI GCGATG 2 cut(s) 795, 1233
BtrI CACGTC 2 cut(s) 409, 855
BtsCI GGATG 2 cut(s) 395, 897
BtsI GCAGTG 1 cut(s) 1257
BtsIMutI CAGTG 3 cut(s) 663, 707, 1257
BtuMI TCGCGA 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 672, 1045
CciI TCATGA 1 cut(s) 258
Cfr10I RCCGGY 2 cut(s) 378, 1054
Cfr13I GGNCC 4 cut(s) 628, 658, 1045, 1162
Cfr42I CCGCGG 1 cut(s) 1234
CseI GACGC 2 cut(s) 59, 209
CviAII CATG 3 cut(s) 196, 259, 655
DdeI CTNAG 5 cut(s) 135, 437, 594, 604, 666
DpnI GATC 4 cut(s) 146, 230, 257, 263
DpnII GATC 4 cut(s) 144, 228, 255, 261
EciI GGCGGA 2 cut(s) 330, 353
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 672
Eco47I GGWCC 3 cut(s) 628, 658, 1162
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 923
Eco88I CYCGRG 3 cut(s) 235, 533, 648
EcoICRI GAGCTC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 199, 262, 658
FaiI YATR 3 cut(s) 197, 260, 656
FaqI GGGAC 3 cut(s) 899, 1049, 1175
FatI CATG 3 cut(s) 195, 258, 654
FauI CCCGC 4 cut(s) 216, 537, 1036, 1238
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 6 cut(s) 86, 178, 268, 675, 1010, 1111
FokI GGATG 2 cut(s) 382, 884
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 6 cut(s) 86, 178, 268, 675, 1010, 1111
GluI GCNGC 6 cut(s) 86, 178, 268, 675, 1010, 1111
HaeIII GGCC 3 cut(s) 498, 1047, 1250
HapII CCGG 6 cut(s) 174, 379, 690, 1055, 1173, 1209
HgaI GACGC 2 cut(s) 59, 209
Hin1I GRCGYC 1 cut(s) 888
Hin1II CATG 3 cut(s) 199, 262, 658
HincII GTYRAC 2 cut(s) 540, 637
HindII GTYRAC 2 cut(s) 540, 637
HindIII AAGCTT 1 cut(s) 836
HpaII CCGG 6 cut(s) 174, 379, 690, 1055, 1173, 1209
HphI GGTGA 2 cut(s) 292, 297
Hpy166II GTNNAC 5 cut(s) 505, 540, 637, 769, 858
Hpy188I TCNGA 5 cut(s) 136, 255, 440, 570, 584
Hpy188III TCNNGA 5 cut(s) 235, 259, 615, 901, 1079
Hpy8I GTNNAC 5 cut(s) 505, 540, 637, 769, 858
Hpy99I CGWCG 3 cut(s) 485, 557, 997
HpyAV CCTTC 4 cut(s) 251, 322, 472, 738
HpyCH4III ACNGT 1 cut(s) 1166
HpyCH4IV ACGT 3 cut(s) 408, 854, 888
HpyCH4V TGCA 5 cut(s) 152, 561, 677, 825, 1262
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 217, 529, 871
HpyF3I CTNAG 5 cut(s) 135, 437, 594, 604, 666
HpySE526I ACGT 3 cut(s) 408, 854, 888
Hsp92I GRCGYC 1 cut(s) 888
Hsp92II CATG 3 cut(s) 199, 262, 658
KspI CCGCGG 1 cut(s) 1234
Kzo9I GATC 4 cut(s) 144, 228, 255, 261
LmnI GCTCC 2 cut(s) 225, 473
Lsp1109I GCAGC 3 cut(s) 97, 189, 661
MaeII ACGT 3 cut(s) 408, 854, 888
MaeIII GTNAC 1 cut(s) 546
MalI GATC 4 cut(s) 146, 230, 257, 263
MbiI CCGCTC 2 cut(s) 270, 468
MboI GATC 4 cut(s) 144, 228, 255, 261
MboII GAAGA 6 cut(s) 132, 223, 277, 403, 883, 957
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 3 cut(s) 747, 828, 1140
MroXI GAANNNNTTC 1 cut(s) 815
MseI TTAA 2 cut(s) 32, 840
MslI CAYNNNNRTG 1 cut(s) 1267
MspA1I CMGCKG 1 cut(s) 1233
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 6 cut(s) 174, 379, 690, 1055, 1173, 1209
MspR9I CCNGG 3 cut(s) 610, 1174, 1209
Mva1269I GAATGC 1 cut(s) 1056
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 2 cut(s) 616, 1233
MwoI GCNNNNNNNGC 4 cut(s) 200, 217, 529, 871
NciI CCSGG 2 cut(s) 1174, 1209
NcoI CCATGG 1 cut(s) 195
NdeII GATC 4 cut(s) 144, 228, 255, 261
NlaIII CATG 3 cut(s) 199, 262, 658
NlaIV GGNNCC 3 cut(s) 383, 1163, 1206
NmeAIII GCCGAG 4 cut(s) 474, 579, 841, 1207
NmuCI GTSAC 1 cut(s) 546
NruI TCGCGA 1 cut(s) 616
NspV TTCGAA 2 cut(s) 695, 833
PaeR7I CTCGAG 1 cut(s) 235
PagI TCATGA 1 cut(s) 258
PcsI WCGNNNNNNNCGW 4 cut(s) 580, 777, 873, 992
PctI GAATGC 1 cut(s) 1056
PdmI GAANNNNTTC 1 cut(s) 815
PfeI GAWTC 3 cut(s) 106, 441, 1003
PfoI TCCNGGA 2 cut(s) 1172, 1207
PkrI GCNGC 6 cut(s) 87, 179, 269, 676, 1011, 1112
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 383, 1163, 1206
PspPI GGNCC 4 cut(s) 628, 658, 1045, 1162
PsuI RGATCY 1 cut(s) 228
RruI TCGCGA 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 1267
SacI GAGCTC 1 cut(s) 672
SacII CCGCGG 1 cut(s) 1234
SaqAI TTAA 2 cut(s) 32, 840
SatI GCNGC 6 cut(s) 86, 178, 268, 675, 1010, 1111
Sau3AI GATC 4 cut(s) 144, 228, 255, 261
Sau96I GGNCC 4 cut(s) 628, 658, 1045, 1162
ScrFI CCNGG 3 cut(s) 610, 1174, 1209
SduI GDGCHC 1 cut(s) 672
Sfr274I CTCGAG 1 cut(s) 235
Sfr303I CCGCGG 1 cut(s) 1234
SfuI TTCGAA 2 cut(s) 695, 833
SgrBI CCGCGG 1 cut(s) 1234
SinI GGWCC 3 cut(s) 628, 658, 1162
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 1267
SmlI CTYRAG 3 cut(s) 235, 707, 839
SmoI CTYRAG 3 cut(s) 235, 707, 839
Sse9I AATT 3 cut(s) 747, 828, 1140
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 3 cut(s) 608, 1172, 1207
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 1166
TaiI ACGT 3 cut(s) 411, 857, 891
TaqII GACCGA 1 cut(s) 616
TasI AATT 3 cut(s) 747, 828, 1140
TauI GCSGC 3 cut(s) 270, 1012, 1113
TfiI GAWTC 3 cut(s) 106, 441, 1003
Tru1I TTAA 2 cut(s) 32, 840
Tru9I TTAA 2 cut(s) 32, 840
TscAI CASTG 3 cut(s) 670, 707, 1264
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 3 cut(s) 85, 177, 674
Tsp45I GTSAC 1 cut(s) 546
TspGWI ACGGA 2 cut(s) 239, 1257
TspRI CASTG 3 cut(s) 670, 707, 1264
Vha464I CTTAAG 1 cut(s) 839
VpaK11BI GGWCC 3 cut(s) 628, 658, 1162
XhoI CTCGAG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 815
ZraI GACGTC 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.