Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Reverse (-)

33525669 .. 33526750

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGTCTCTCCCACACGACGCCCTCCACCACATCTTCTCGCTCCTCCCCCTCCCTCAGATCATGATCTGCCGCTCCGTCAGCAAGCACCTCCACCAAGTCCTCACCTCCCCCTCCTTCATCCAACTCATCTACACCCACTCTCCTCCCCTCCGCCTCCTCGCCCTCCGCCCTCCCCACCACCGCCACCACCACCTCTCCTCCCCTCCCTCCCTCCACGTCTTCGACCCCGACCTCCACCGCTGGCTCCGCTTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCCGGCCTCCTCTACCTCTGGGCCGACTCCCCCGACTCCACCAAGTCCCTCGTCGTCTGCAACCCTCTCACCCGCTGCTTCCACACCTTGCCTCAGCTCGGCTCCGCCTGGTCAAGGCACGGCTCCGTCCTCGTTGACTCCGCCACCCGCGTCATGCCCCGCAGCCCGATCCTCGTGGCCGACTCGGTCTTGGCGCTCTGCGACGTCGGCTCGCCGTGGAGGAGCCAGTGGAAGCTTTTCGCGTGCACCATTTCGAAGCTGAGGAGCTCGCAGACGTGGACGAGGCTCGAGAAGCAGGAGTGGGGGGACGTGTTCGACATTTTGAAACGGCCTCGTTTGGTTCGCGGAAATGGGAGCAAGATCTTGATGGTTGGGGGGTTAAAGTCCTCGTTTTCGCTGAACTCGGCGTGCTCGACGATTCTGATACTGAGGCTGGATTTGGATAGCTGGGAGTGGGACGAGGCGGGCCGAATGCCGGTGGATATGTTTAAGTGTTTTCAGGACTGTAGCAAGTTCAAGGTGTTTGGTGGCGGCGACAGGGTTTGTTTTTCGGCTAAGAGATTGGGGAAGTTGGCTTTGTGGGACAATTGTCCGGGGAAGGCAGAGTGGCGGTGGATTGATGGCGTTCCCGGAAGTGGCGATGGGCTTTGCAGGGGTTTGTTTTCGAGGCCAGGCTCACCCCATTGGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

332

Amino Acids

37.47

Weight (kDa)

9.3

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 41	1.9e-08	F-box domain
F-box-like	PF12937	2 - 40	5.2e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	510
AccBSI	CCGCTC	2 cut(s)	75, 279
AccII	CGCG	3 cut(s)	453, 545, 648
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	480
AcyI	GRCGYC	2 cut(s)	21, 507
AfiI	CCNNNNNNNGG	4 cut(s)	401, 417, 778, 938
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	2 cut(s)	628, 820
AjiI	CACGTC	3 cut(s)	220, 579, 613
AjnI	CCWGG	2 cut(s)	410, 973
AluBI	AGCT	5 cut(s)	400, 538, 562, 570, 750
AluI	AGCT	5 cut(s)	400, 538, 562, 570, 750
Alw21I	GWGCWC	3 cut(s)	551, 572, 716
Alw26I	GTCTC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	6 cut(s)	307, 324, 480, 632, 769, 971
ApaLI	GTGCAC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	378, 465
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	324, 769
AsuC2I	CCSGG	2 cut(s)	897, 933
AsuHPI	GGTGA	3 cut(s)	97, 364, 972
AsuII	TTCGAA	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	572
BauI	CACGAG	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	3 cut(s)	551, 572, 716
BbvCI	CCTCAGC	2 cut(s)	396, 563
BbvI	GCAGC	2 cut(s)	365, 477
BccI	CCATC	3 cut(s)	664, 917, 938
BceAI	ACGGC	3 cut(s)	439, 502, 647
BciT130I	CCWGG	2 cut(s)	412, 975
BcnI	CCSGG	2 cut(s)	897, 933
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	808
BfoI	RGCGCY	1 cut(s)	500
BglII	AGATCT	1 cut(s)	663
BisI	GCNGC	4 cut(s)	73, 379, 466, 835
BlsI	GCNGC	4 cut(s)	74, 380, 467, 836
Bme1390I	CCNGG	4 cut(s)	412, 897, 933, 975
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	3 cut(s)	220, 579, 613
BmgT120I	GGNCC	2 cut(s)	324, 769
BmiI	GGNNCC	4 cut(s)	248, 406, 427, 527
BmrFI	CCNGG	4 cut(s)	412, 897, 933, 975
BoxI	GACNNNNGTC	1 cut(s)	891
BpiI	GAAGAC	1 cut(s)	214
Bpu10I	CCTNAGC	2 cut(s)	396, 563
Bpu14I	TTCGAA	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	897, 933
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	21, 507
BsaJI	CCNNGG	2 cut(s)	518, 896
BsaXI	ACNNNNNCTCC	6 cut(s)	127, 157, 182, 185, 212, 215
Bsc4I	CCNNNNNNNGG	4 cut(s)	401, 417, 778, 938
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	412, 975
BseDI	CCNNGG	2 cut(s)	518, 896
BseGI	GGATG	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	4 cut(s)	401, 417, 778, 938
BseMII	CTCAG	4 cut(s)	71, 410, 554, 722
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	9 cut(s)	35, 135, 149, 190, 289, 292, 302, 538, 580
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	365, 477
BseYI	CCCAGC	1 cut(s)	750
Bsh1236I	CGCG	3 cut(s)	453, 545, 648
BshFI	GGCC	6 cut(s)	309, 326, 482, 634, 771, 973
BsiHKAI	GWGCWC	3 cut(s)	551, 572, 716
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	4 cut(s)	306, 779, 896, 933
BslFI	GGGAC	4 cut(s)	334, 623, 773, 899
BslI	CCNNNNNNNGG	4 cut(s)	401, 417, 778, 938
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	4 cut(s)	334, 623, 773, 899
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	6 cut(s)	309, 326, 482, 634, 771, 973
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	3 cut(s)	551, 572, 716
Bsp143I	GATC	4 cut(s)	60, 66, 471, 663
BspANI	GGCC	6 cut(s)	309, 326, 482, 634, 771, 973
BspCNI	CTCAG	4 cut(s)	70, 409, 555, 723
BspFNI	CGCG	3 cut(s)	453, 545, 648
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	4 cut(s)	248, 406, 427, 527
BspPI	GGATC	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	557
BsrBI	CCGCTC	2 cut(s)	75, 279
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	2 cut(s)	518, 896
BssMI	GATC	4 cut(s)	60, 66, 471, 663
BssNI	GRCGYC	2 cut(s)	21, 507
BssSI	CACGAG	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	476
Bst2UI	CCWGG	2 cut(s)	412, 975
Bst4CI	ACNGT	1 cut(s)	809
BstACI	GRCGYC	2 cut(s)	21, 507
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	7 cut(s)	86, 245, 515, 547, 572, 712, 769
BstDEI	CTNAG	5 cut(s)	57, 396, 563, 731, 858
BstDSI	CCRYGG	1 cut(s)	518
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	3 cut(s)	453, 545, 648
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	63, 69, 474, 666
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	60, 66, 471, 663
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 249, 510, 595
BstNI	CCWGG	2 cut(s)	412, 975
BstPAI	GACNNNNGTC	1 cut(s)	891
BstSCI	CCNGG	4 cut(s)	410, 895, 931, 973
BstSFI	CTRYAG	1 cut(s)	808
BstSLI	GKGCMC	1 cut(s)	551
BstUI	CGCG	3 cut(s)	453, 545, 648
BstV1I	GCAGC	2 cut(s)	365, 477
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	6 cut(s)	309, 326, 482, 634, 771, 973
BtgI	CCRYGG	1 cut(s)	518
BtgZI	GCGATG	1 cut(s)	957
BtrI	CACGTC	3 cut(s)	220, 579, 613
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	7 cut(s)	86, 245, 515, 547, 572, 712, 769
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	324, 769
CseI	GACGC	2 cut(s)	29, 442
CviAII	CATG	2 cut(s)	64, 457
DdeI	CTNAG	5 cut(s)	57, 396, 563, 731, 858
DpnI	GATC	4 cut(s)	62, 68, 473, 665
DpnII	GATC	4 cut(s)	60, 66, 471, 663
EaeI	YGGCCR	1 cut(s)	480
EciI	GGCGGA	4 cut(s)	143, 158, 397, 433
Ecl136II	GAGCTC	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	570
EcoNI	CCTNNNNNAGG	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	410, 973
EcoT38I	GRGCYC	1 cut(s)	572
FaeI	CATG	2 cut(s)	67, 460
FaiI	YATR	3 cut(s)	65, 458, 788
FaqI	GGGAC	4 cut(s)	334, 623, 773, 899
FatI	CATG	2 cut(s)	63, 456
FauI	CCCGC	4 cut(s)	383, 458, 470, 760
Fnu4HI	GCNGC	4 cut(s)	73, 379, 466, 835
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	4 cut(s)	73, 379, 466, 835
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	4 cut(s)	73, 379, 466, 835
GsaI	CCCAGC	1 cut(s)	754
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	6 cut(s)	309, 326, 482, 634, 771, 973
HapII	CCGG	4 cut(s)	306, 779, 896, 933
HgaI	GACGC	2 cut(s)	29, 442
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	2 cut(s)	21, 507
Hin1II	CATG	2 cut(s)	67, 460
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	6 cut(s)	5, 329, 338, 440, 485, 721
HpaII	CCGG	4 cut(s)	306, 779, 896, 933
HphI	GGTGA	3 cut(s)	97, 364, 972
Hpy166II	GTNNAC	3 cut(s)	439, 549, 582
Hpy188I	TCNGA	2 cut(s)	60, 726
Hpy188III	TCNNGA	4 cut(s)	64, 592, 667, 803
Hpy8I	GTNNAC	3 cut(s)	439, 549, 582
Hpy99I	CGWCG	6 cut(s)	23, 296, 359, 509, 512, 721
HpyAV	CCTTC	3 cut(s)	127, 283, 895
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	4 cut(s)	219, 507, 578, 612
HpyCH4V	TGCA	3 cut(s)	363, 549, 954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 249, 510, 595
HpyF3I	CTNAG	5 cut(s)	57, 396, 563, 731, 858
HpySE526I	ACGT	4 cut(s)	219, 507, 578, 612
Hsp92I	GRCGYC	2 cut(s)	21, 507
Hsp92II	CATG	2 cut(s)	67, 460
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	4 cut(s)	60, 66, 471, 663
LmnI	GCTCC	9 cut(s)	48, 80, 252, 284, 410, 431, 525, 567, 657
Lsp1109I	GCAGC	2 cut(s)	365, 477
MaeII	ACGT	4 cut(s)	219, 507, 578, 612
MalI	GATC	4 cut(s)	62, 68, 473, 665
MbiI	CCGCTC	2 cut(s)	75, 279
MboI	GATC	4 cut(s)	60, 66, 471, 663
MboII	GAAGA	2 cut(s)	28, 214
MfeI	CAATTG	1 cut(s)	889
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	3 cut(s)	551, 572, 716
MluCI	AATT	1 cut(s)	889
MlyI	GAGTC	5 cut(s)	14, 323, 332, 434, 479
MmeI	TCCRAC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	2 cut(s)	683, 792
MspA1I	CMGCKG	2 cut(s)	243, 378
MspI	CCGG	4 cut(s)	306, 779, 896, 933
MspR9I	CCNGG	4 cut(s)	412, 897, 933, 975
MunI	CAATTG	1 cut(s)	889
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	2 cut(s)	412, 975
MvnI	CGCG	3 cut(s)	453, 545, 648
MwoI	GCNNNNNNNGC	4 cut(s)	81, 249, 510, 595
NciI	CCSGG	2 cut(s)	897, 933
NdeII	GATC	4 cut(s)	60, 66, 471, 663
NlaIII	CATG	2 cut(s)	67, 460
NlaIV	GGNNCC	4 cut(s)	248, 406, 427, 527
NmeAIII	GCCGAG	2 cut(s)	381, 686
NspV	TTCGAA	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	590
PagI	TCATGA	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	713
PctI	GAATGC	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	721
PflFI	GACNNNGTC	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	931
PkrI	GCNGC	4 cut(s)	74, 380, 467, 836
PleI	GAGTC	5 cut(s)	13, 323, 332, 434, 479
PpsI	GAGTC	5 cut(s)	13, 323, 332, 434, 479
PshAI	GACNNNNGTC	1 cut(s)	891
Psp124BI	GAGCTC	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	410, 973
PspFI	CCCAGC	1 cut(s)	750
PspGI	CCWGG	2 cut(s)	410, 973
PspN4I	GGNNCC	4 cut(s)	248, 406, 427, 527
PspPI	GGNCC	2 cut(s)	324, 769
PsuI	RGATCY	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	683, 792
SatI	GCNGC	4 cut(s)	73, 379, 466, 835
Sau3AI	GATC	4 cut(s)	60, 66, 471, 663
Sau96I	GGNCC	2 cut(s)	324, 769
SchI	GAGTC	5 cut(s)	14, 323, 332, 434, 479
ScrFI	CCNGG	4 cut(s)	412, 897, 933, 975
SduI	GDGCHC	3 cut(s)	551, 572, 716
SfcI	CTRYAG	1 cut(s)	808
Sfr274I	CTCGAG	1 cut(s)	590
SfuI	TTCGAA	1 cut(s)	557
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	1 cut(s)	889
SstI	GAGCTC	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	410, 895, 931, 973
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	4 cut(s)	222, 510, 581, 615
TaqI	TCGA	7 cut(s)	225, 261, 557, 591, 618, 716, 968
TaqII	GACCGA	1 cut(s)	478
TasI	AATT	1 cut(s)	889
TauI	GCSGC	2 cut(s)	75, 837
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	2 cut(s)	683, 792
Tru9I	TTAA	2 cut(s)	683, 792
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	2 cut(s)	378, 465
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	2 cut(s)	67, 418
TspRI	CASTG	1 cut(s)	536
Tth111I	GACNNNGTC	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	547
XagI	CCTNNNNNAGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	539
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.