Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Forward (+)

3599303 .. 3600482

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1021300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACGCTCTCCCGCAGGACACGCTCCACCAGATCTTCTCGAGCCTTCCCCTCCGTCAGATCATGATCTGCCGCTCACTCTCCAAGTTCTTCAACCAACTCCTCACCTCACCCTCCTTCCTCCACCTCATCTCCACCCAATCTCCGCCCCTCAACCTCCTCGCCCTCCGCCCTCCCCATCACCGGCACCTGTCCTCCCCATCCTGCCTCCACGTCTTCGACCCCGACCTCAACCAATGGCTCAGATTCCCCCTGGATTTCCTCCCCTTCCGCTCCCCACACCCCGTCGCCTCCTCCCTCGGCCTCGTCTACCTCTGGGGCGACTCGCCCGACCCGCCCGAGTCAACCAAGTCACTCGTCGTCTGCAACCCTCTGACTCGCCAGTTCCGAGTCCTCCCTCAGCTTGGCTCGGCCTGGTCGCGCCACGGCTCGGTCCTCGTTGACTCCCAAACCCGAGTCATGGTCCTCACTGAGCTCGCTGCGCTCTACTTCTCCGGTTCGAACCAGTGGCTCAAGTTCTCATCGAACCTCCCTTCAAAACCCAGAAGCCCAATTTTGGTGTTCGACTCGGTTTACGCCCTGTGCGATGTGGGTTCGCCATGGCGGTGTCAATGGAAGCTATTCCGTTGCACAATTTCGAAGCTTAAGACCTCGCAGACGTGGACTCGGCTCGAAAAGCACGAGTGGGGGGACGTCTTCGACATCCTGAAGCGACCCCGTTTGGTTCGGGGGAATGGAAACAAGGTGCTGATGGTTGGTGGGTTGAAGTCGTCTTTCTCGCTCAACGCTTCGTGTTCGACGATTTTGATTCTGCGGCTGGACTTGGATAGCTTGGAGTGGGACGAGGCGGGCCGAATGCCGGTGGAGATGTTCAGGTGCTTTCAAGAGTCGAGCAAGTTCAAGGTGTTTGGTGGCGGCGACAAGGTTTGTTTTTCGGCAAAGAGAATTGGGAGATTGGCTTTGTGGGACCGTTGTTCCGGGAAAGCCGAGTGGCGGTGGATTGATGGGGTTCCCGGAAGTGGCGATGGGCTTTCCCGGGGTTTCGTTTTTGAGGCTACGCTCACTGCATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

359

Amino Acids

40.44

Weight (kDa)

9.4

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	3 - 42	6.4e-07	F-box domain
Beta-prop_KIB1-4	PF03478	82 - 286	1.8e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	186
AccBSI	CCGCTC	2 cut(s)	75, 273
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	693
AfiI	CCNNNNNNNGG	8 cut(s)	183, 404, 430, 460, 556, 859, 993, 1019
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	5 cut(s)	94, 537, 766, 884, 901
AjiI	CACGTC	2 cut(s)	214, 660
AjnI	CCWGG	2 cut(s)	252, 413
AluBI	AGCT	5 cut(s)	403, 475, 619, 643, 831
AluI	AGCT	5 cut(s)	403, 475, 619, 643, 831
Alw21I	GWGCWC	1 cut(s)	477
Ama87I	CYCGRG	4 cut(s)	40, 338, 453, 1035
AoxI	GGCC	3 cut(s)	301, 411, 850
ApeKI	GCWGC	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	423, 484
AspS9I	GGNCC	4 cut(s)	433, 463, 850, 967
AsuC2I	CCSGG	4 cut(s)	979, 1014, 1036, 1037
AsuHPI	GGTGA	3 cut(s)	97, 102, 173
AsuII	TTCGAA	2 cut(s)	500, 638
AvaI	CYCGRG	4 cut(s)	40, 338, 453, 1035
AvaII	GGWCC	3 cut(s)	433, 463, 967
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	477
BauI	CACGAG	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	208, 688
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	5 cut(s)	186, 208, 745, 998, 1019
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	2 cut(s)	254, 415
BcnI	CCSGG	4 cut(s)	979, 1014, 1036, 1037
BfrI	CTTAAG	1 cut(s)	644
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	4 cut(s)	73, 480, 815, 916
BlsI	GCNGC	4 cut(s)	74, 481, 816, 917
Bme1390I	CCNGG	6 cut(s)	254, 415, 979, 1014, 1036, 1037
Bme18I	GGWCC	3 cut(s)	433, 463, 967
BmeT110I	CYCGRG	4 cut(s)	40, 338, 453, 1035
BmgBI	CACGTC	2 cut(s)	214, 660
BmgT120I	GGNCC	4 cut(s)	433, 463, 850, 967
BmiI	GGNNCC	3 cut(s)	188, 968, 1011
BmrFI	CCNGG	6 cut(s)	254, 415, 979, 1014, 1036, 1037
BpiI	GAAGAC	2 cut(s)	208, 688
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	2 cut(s)	500, 638
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	4 cut(s)	979, 1014, 1036, 1037
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	6 cut(s)	252, 298, 424, 599, 1035, 1036
BsaWI	WCCGGW	1 cut(s)	494
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 127, 146, 157, 179, 209
Bsc4I	CCNNNNNNNGG	8 cut(s)	183, 404, 430, 460, 556, 859, 993, 1019
Bse118I	RCCGGY	2 cut(s)	183, 859
Bse1I	ACTGG	2 cut(s)	382, 505
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	254, 415
BseDI	CCNNGG	6 cut(s)	252, 298, 424, 599, 1035, 1036
BseGI	GGATG	2 cut(s)	200, 702
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	8 cut(s)	183, 404, 430, 460, 556, 859, 993, 1019
BseMII	CTCAG	3 cut(s)	256, 413, 462
BseNI	ACTGG	2 cut(s)	382, 505
BseRI	GAGGAG	3 cut(s)	92, 149, 283
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	303, 413, 852
BshNI	GGYRCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	4 cut(s)	40, 338, 453, 1035
BsiSI	CCGG	6 cut(s)	184, 495, 860, 978, 1014, 1036
BslFI	GGGAC	3 cut(s)	704, 854, 980
BslI	CCNNNNNNNGG	8 cut(s)	183, 404, 430, 460, 556, 859, 993, 1019
BsmFI	GGGAC	3 cut(s)	704, 854, 980
BsmI	GAATGC	1 cut(s)	861
BsnI	GGCC	3 cut(s)	303, 413, 852
BsoBI	CYCGRG	4 cut(s)	40, 338, 453, 1035
Bsp119I	TTCGAA	2 cut(s)	500, 638
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	33, 60, 66
Bsp19I	CCATGG	1 cut(s)	599
BspANI	GGCC	3 cut(s)	303, 413, 852
BspCNI	CTCAG	3 cut(s)	255, 412, 463
BspFNI	CGCG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	188, 968, 1011
BspT104I	TTCGAA	2 cut(s)	500, 638
BspT107I	GGYRCC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	644
BsrBI	CCGCTC	2 cut(s)	75, 273
BsrFI	RCCGGY	2 cut(s)	183, 859
BsrI	ACTGG	2 cut(s)	382, 505
BssAI	RCCGGY	2 cut(s)	183, 859
BssECI	CCNNGG	6 cut(s)	252, 298, 424, 599, 1035, 1036
BssMI	GATC	3 cut(s)	33, 60, 66
BssNI	GRCGYC	1 cut(s)	693
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	1 cut(s)	599
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	254, 415
Bst4CI	ACNGT	1 cut(s)	971
BstACI	GRCGYC	1 cut(s)	693
BstAFI	CTTAAG	1 cut(s)	644
BstBI	TTCGAA	2 cut(s)	500, 638
BstC8I	GCNNGC	2 cut(s)	477, 850
BstDEI	CTNAG	3 cut(s)	242, 399, 471
BstDSI	CCRYGG	2 cut(s)	424, 599
BstF5I	GGATG	2 cut(s)	200, 702
BstFNI	CGCG	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	423, 484
BstKTI	GATC	3 cut(s)	36, 63, 69
BstMBI	GATC	3 cut(s)	33, 60, 66
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 334, 481, 676
BstNI	CCWGG	2 cut(s)	254, 415
BstSCI	CCNGG	6 cut(s)	252, 413, 977, 1012, 1034, 1035
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	2 cut(s)	208, 688
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	3 cut(s)	303, 413, 852
BtgI	CCRYGG	2 cut(s)	424, 599
BtgZI	GCGATG	2 cut(s)	600, 1038
BtrI	CACGTC	2 cut(s)	214, 660
BtsCI	GGATG	2 cut(s)	200, 702
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	3 cut(s)	468, 512, 1062
Cac8I	GCNNGC	2 cut(s)	477, 850
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	2 cut(s)	423, 484
Cfr10I	RCCGGY	2 cut(s)	183, 859
Cfr13I	GGNCC	4 cut(s)	433, 463, 850, 967
Cfr9I	CCCGGG	1 cut(s)	1035
CseI	GACGC	1 cut(s)	14
CviAII	CATG	3 cut(s)	64, 460, 600
DdeI	CTNAG	3 cut(s)	242, 399, 471
DpnI	GATC	3 cut(s)	35, 62, 68
DpnII	GATC	3 cut(s)	33, 60, 66
EciI	GGCGGA	2 cut(s)	135, 158
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	433, 463, 967
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	728
Eco88I	CYCGRG	4 cut(s)	40, 338, 453, 1035
EcoICRI	GAGCTC	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	252, 413
EcoT14I	CCWWGG	1 cut(s)	599
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	3 cut(s)	67, 463, 603
FaiI	YATR	3 cut(s)	65, 461, 601
FaqI	GGGAC	3 cut(s)	704, 854, 980
FatI	CATG	3 cut(s)	63, 459, 599
FauI	CCCGC	3 cut(s)	21, 342, 841
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	73, 480, 815, 916
FokI	GGATG	2 cut(s)	187, 689
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	73, 480, 815, 916
GlaI	GCGC	2 cut(s)	422, 483
GluI	GCNGC	4 cut(s)	73, 480, 815, 916
HaeIII	GGCC	3 cut(s)	303, 413, 852
HapII	CCGG	6 cut(s)	184, 495, 860, 978, 1014, 1036
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	423, 484
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	3 cut(s)	67, 463, 603
Hin6I	GCGC	2 cut(s)	421, 482
HinP1I	GCGC	2 cut(s)	421, 482
HincII	GTYRAC	2 cut(s)	345, 442
HindII	GTYRAC	2 cut(s)	345, 442
HindIII	AAGCTT	1 cut(s)	641
HpaII	CCGG	6 cut(s)	184, 495, 860, 978, 1014, 1036
HphI	GGTGA	3 cut(s)	97, 102, 173
Hpy166II	GTNNAC	5 cut(s)	310, 345, 442, 574, 663
Hpy188I	TCNGA	4 cut(s)	60, 245, 375, 389
Hpy188III	TCNNGA	4 cut(s)	40, 64, 706, 884
Hpy8I	GTNNAC	5 cut(s)	310, 345, 442, 574, 663
Hpy99I	CGWCG	3 cut(s)	290, 362, 802
HpyAV	CCTTC	4 cut(s)	56, 127, 277, 543
HpyCH4III	ACNGT	1 cut(s)	971
HpyCH4IV	ACGT	3 cut(s)	213, 659, 693
HpyCH4V	TGCA	3 cut(s)	366, 630, 1067
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 334, 481, 676
HpyF3I	CTNAG	3 cut(s)	242, 399, 471
HpySE526I	ACGT	3 cut(s)	213, 659, 693
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	3 cut(s)	67, 463, 603
HspAI	GCGC	2 cut(s)	421, 482
Kzo9I	GATC	3 cut(s)	33, 60, 66
LmnI	GCTCC	2 cut(s)	30, 278
Lsp1109I	GCAGC	1 cut(s)	466
MaeII	ACGT	3 cut(s)	213, 659, 693
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	3 cut(s)	35, 62, 68
MbiI	CCGCTC	2 cut(s)	75, 273
MboI	GATC	3 cut(s)	33, 60, 66
MboII	GAAGA	4 cut(s)	28, 82, 208, 688
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	552, 633, 945
MlyI	GAGTC	9 cut(s)	317, 350, 370, 399, 437, 465, 560, 658, 896
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	604
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	6 cut(s)	184, 495, 860, 978, 1014, 1036
MspR9I	CCNGG	6 cut(s)	254, 415, 979, 1014, 1036, 1037
Mva1269I	GAATGC	1 cut(s)	861
MvaI	CCWGG	2 cut(s)	254, 415
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	4 cut(s)	22, 334, 481, 676
NciI	CCSGG	4 cut(s)	979, 1014, 1036, 1037
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	3 cut(s)	33, 60, 66
NlaIII	CATG	3 cut(s)	67, 463, 603
NlaIV	GGNNCC	3 cut(s)	188, 968, 1011
NmeAIII	GCCGAG	4 cut(s)	279, 389, 646, 1012
NmuCI	GTSAC	1 cut(s)	351
NspV	TTCGAA	2 cut(s)	500, 638
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	4 cut(s)	385, 582, 678, 797
PctI	GAATGC	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	246, 808
PfoI	TCCNGGA	2 cut(s)	977, 1012
PkrI	GCNGC	4 cut(s)	74, 481, 816, 917
PleI	GAGTC	9 cut(s)	317, 349, 370, 398, 437, 464, 560, 658, 895
PpsI	GAGTC	9 cut(s)	317, 349, 370, 398, 437, 464, 560, 658, 895
Psp124BI	GAGCTC	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	252, 413
PspGI	CCWGG	2 cut(s)	252, 413
PspN4I	GGNNCC	3 cut(s)	188, 968, 1011
PspPI	GGNCC	4 cut(s)	433, 463, 850, 967
PsuI	RGATCY	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	604
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	73, 480, 815, 916
Sau3AI	GATC	3 cut(s)	33, 60, 66
Sau96I	GGNCC	4 cut(s)	433, 463, 850, 967
SchI	GAGTC	9 cut(s)	317, 350, 370, 399, 437, 465, 560, 658, 896
ScrFI	CCNGG	6 cut(s)	254, 415, 979, 1014, 1036, 1037
SduI	GDGCHC	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	40
SfuI	TTCGAA	2 cut(s)	500, 638
SinI	GGWCC	3 cut(s)	433, 463, 967
SlaI	CTCGAG	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	1037
SmiMI	CAYNNNNRTG	1 cut(s)	604
SmlI	CTYRAG	3 cut(s)	40, 512, 644
SmoI	CTYRAG	3 cut(s)	40, 512, 644
Sse9I	AATT	3 cut(s)	552, 633, 945
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	6 cut(s)	252, 413, 977, 1012, 1034, 1035
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	971
TaiI	ACGT	3 cut(s)	216, 662, 696
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	3 cut(s)	552, 633, 945
TauI	GCSGC	3 cut(s)	75, 817, 918
TfiI	GAWTC	2 cut(s)	246, 808
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	3 cut(s)	475, 512, 1069
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	351
TspGWI	ACGGA	2 cut(s)	44, 614
TspMI	CCCGGG	1 cut(s)	1035
TspRI	CASTG	3 cut(s)	475, 512, 1069
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	3 cut(s)	433, 463, 967
XhoI	CTCGAG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	1035
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	620
ZraI	GACGTC	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.