Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Forward (+)

43273444 .. 43275825

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0346400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTATGGGAGATTTCGGAACATTGTGAAAGTTGGTGAAAGTTGGTGTCCGCTTTTGAAAGTTGCAGATATGGGATTATATGATTTTCATCTTAATGATCTTATAAGGATGTTATATTATGGATGGTGGAAGCTTCTTGATCCATGTAATCTGGCTTCCAATCCTCTAGAATCAAATAAATACTTGAATGCACCGAACAAACCCCAACAAGTGATGGGCCAAATAGAGCCTGTACGTGCTCGACATAGTGAGAAAGGGCGACATTCAATGAGTTTTTCACAACATCGAGCATATTTGGCCCGACGACGTGCAATAGCTCAAGGAAAGCGACCAATGGTGGAAACTAGCTCAAGCAACAGAGCTAAACAAGCTCCAGGAAAGGTACGAGCTAGGCGCCCTCAACAAAAGAAAAAGTTCCAAAGAGACGAGGACTTTAGGAGACGTGTTTCCATGTTTTCATCTGGTTGGCGGATGGGACAATCAGTAAAAATTAACACCGCTTATCTCAGTGAGCTGATTTTGAAAGAGTGGAAGAAAAAGAAGCATGCACATTGGCGCTACAGAAACGCACGTACAGAGTTGATGACACACGATATTGGTCACATTAAACGAACTTGGAGAAAGGTTTTGCGCATTAGGAGGCAAAAGCATCGTGAACAAAACAGCTTTTTGGCTAAGTTCTACATCAAGCGTTTTGAGGATTTGAAACATGATATTGAGAACTCTTCCAATAATTGGACCAAAGGTGTTGCAGTAAGGGAATTATCTAACTTCATGTATGGGCAACGATTGTTGACAAATGGATGGCTGAGATGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

273

Amino Acids

32.73

Weight (kDa)

10.86

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
Acc16I	TGCGCA	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	393
AccB7I	CCANNNNNTGG	1 cut(s)	735
AciI	CCGC	3 cut(s)	50, 469, 498
AclWI	GGATC	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	3 cut(s)	234, 384, 574
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	5 cut(s)	58, 187, 267, 523, 706
AjiI	CACGTC	2 cut(s)	308, 443
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	8 cut(s)	133, 317, 348, 362, 371, 389, 514, 666
AluI	AGCT	8 cut(s)	133, 317, 348, 362, 371, 389, 514, 666
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	417, 433
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	217, 297
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	3 cut(s)	396, 558, 633
AspS9I	GGNCC	3 cut(s)	217, 298, 738
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	139, 171
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	5 cut(s)	117, 208, 466, 798, 807
BcgI	CGANNNNNNTGC	2 cut(s)	632, 666
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	417, 433
BfaI	CTAG	3 cut(s)	167, 345, 390
BfmI	CTRYAG	1 cut(s)	559
BfoI	RGCGCY	2 cut(s)	397, 559
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	738
BmgBI	CACGTC	2 cut(s)	308, 443
BmgT120I	GGNCC	3 cut(s)	217, 298, 738
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	658
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	303, 334
BsaAI	YACGTR	2 cut(s)	236, 572
BsaBI	GATNNNNATC	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	114, 128, 477, 809
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	520, 800
BshFI	GGCC	2 cut(s)	219, 299
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	2 cut(s)	417, 433
BsmBI	CGTCTC	2 cut(s)	417, 433
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	219, 299
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	97, 139
BspACI	CCGC	3 cut(s)	50, 469, 498
BspANI	GGCC	2 cut(s)	219, 299
BspCNI	CTCAG	2 cut(s)	519, 801
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	393
BssMI	GATC	2 cut(s)	97, 139
BssNI	GRCGYC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	730
BstACI	GRCGYC	1 cut(s)	394
BstBAI	YACGTR	2 cut(s)	236, 572
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	506, 675, 809
BstF5I	GGATG	4 cut(s)	114, 128, 477, 809
BstH2I	RGCGCY	2 cut(s)	397, 559
BstHHI	GCGC	3 cut(s)	396, 558, 633
BstKTI	GATC	2 cut(s)	100, 142
BstMAI	GTCTC	2 cut(s)	417, 433
BstMBI	GATC	2 cut(s)	97, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 368
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	219, 299
BtrI	CACGTC	2 cut(s)	308, 443
BtsCI	GGATG	4 cut(s)	114, 128, 477, 809
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	3 cut(s)	396, 558, 633
Cfr13I	GGNCC	3 cut(s)	217, 298, 738
Csp6I	GTAC	3 cut(s)	233, 383, 573
CviAII	CATG	5 cut(s)	144, 451, 545, 710, 775
CviQI	GTAC	3 cut(s)	233, 383, 573
DdeI	CTNAG	3 cut(s)	506, 675, 809
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	2 cut(s)	99, 141
DpnII	GATC	2 cut(s)	97, 139
Eam1104I	CTCTTC	1 cut(s)	730
EarI	CTCTTC	1 cut(s)	730
EciI	GGCGGA	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
Esp3I	CGTCTC	2 cut(s)	417, 433
FaeI	CATG	5 cut(s)	147, 454, 548, 713, 778
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	5 cut(s)	143, 450, 544, 709, 774
FokI	GGATG	4 cut(s)	121, 135, 484, 816
FspBI	CTAG	3 cut(s)	167, 345, 390
FspI	TGCGCA	1 cut(s)	632
GlaI	GCGC	3 cut(s)	395, 557, 632
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	2 cut(s)	397, 559
HaeIII	GGCC	2 cut(s)	219, 299
HhaI	GCGC	3 cut(s)	396, 558, 633
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	5 cut(s)	147, 454, 548, 713, 778
Hin6I	GCGC	3 cut(s)	394, 556, 631
HinP1I	GCGC	3 cut(s)	394, 556, 631
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	656, 795
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	3 cut(s)	137, 167, 653
Hpy8I	GTNNAC	2 cut(s)	656, 795
Hpy99I	CGWCG	2 cut(s)	306, 309
HpyCH4IV	ACGT	4 cut(s)	235, 307, 442, 571
HpyCH4V	TGCA	5 cut(s)	65, 191, 311, 548, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 368
HpyF3I	CTNAG	3 cut(s)	506, 675, 809
HpySE526I	ACGT	4 cut(s)	235, 307, 442, 571
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	5 cut(s)	147, 454, 548, 713, 778
HspAI	GCGC	3 cut(s)	394, 556, 631
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	97, 139
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	5 cut(s)	137, 243, 360, 387, 447
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	3 cut(s)	167, 345, 390
MaeII	ACGT	4 cut(s)	235, 307, 442, 571
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	2 cut(s)	99, 141
MboI	GATC	2 cut(s)	97, 139
MboII	GAAGA	2 cut(s)	544, 717
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	489, 733, 761
Mly113I	GGCGCC	1 cut(s)	394
MnlI	CCTC	5 cut(s)	174, 408, 421, 633, 691
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	3 cut(s)	93, 492, 606
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	296, 368
NarI	GGCGCC	1 cut(s)	394
NdeII	GATC	2 cut(s)	97, 139
NlaIII	CATG	5 cut(s)	147, 454, 548, 713, 778
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	599
NsbI	TGCGCA	1 cut(s)	632
NspI	RCATGY	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	735
PfoI	TCCNGGA	1 cut(s)	373
PluTI	GGCGCC	1 cut(s)	397
Ppu21I	YACGTR	2 cut(s)	236, 572
PsiI	TTATAA	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	3 cut(s)	217, 298, 738
RsaI	GTAC	3 cut(s)	234, 384, 574
RsaNI	GTAC	3 cut(s)	233, 383, 573
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	93, 492, 606
Sau3AI	GATC	2 cut(s)	97, 139
Sau96I	GGNCC	3 cut(s)	217, 298, 738
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	559
SfoI	GGCGCC	1 cut(s)	395
SinI	GGWCC	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	318, 349
SmoI	CTYRAG	2 cut(s)	318, 349
SphI	GCATGC	1 cut(s)	548
Sse9I	AATT	3 cut(s)	489, 733, 761
SsiI	CCGC	3 cut(s)	50, 469, 498
SspDI	GGCGCC	1 cut(s)	393
SspMI	CTAG	3 cut(s)	167, 345, 390
StyD4I	CCNGG	1 cut(s)	373
TaiI	ACGT	4 cut(s)	238, 310, 445, 574
TaqI	TCGA	2 cut(s)	241, 286
TasI	AATT	3 cut(s)	489, 733, 761
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	3 cut(s)	93, 492, 606
Tru9I	TTAA	3 cut(s)	93, 492, 606
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	3 cut(s)	77, 447, 763
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	738
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	3 cut(s)	167, 345, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.