Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Reverse (-)

55717166 .. 55718079

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTCCTCACTGAGCTTGCCGCGCTCTATTTCTCCAGCGGCACGGGCAACTGGTGGCTCAAATTCTCTTCCAATCTTCCGTTACGTCCTGGGACGAAATTGTCGAGCGATATGTGCAGTTACTCGATATGTGATGAAGTACCGGCATTGCGATGGAAAGCTGAGAATTTAGACTATATTATTGAGATTGAACTTGCAGAGTTTGAAGTTACCATTTTGAAGCTGAGGGGCTCACAGATGTGGACAAGGCTAGAGATGCAGGAGTGGAGGGACGTGTTCGACATTTTGAAACGGCCTTGTTTGGTTCACTGGGAGCAAGAGCTTAATGATTGGGGGTTTGGAGTCCTCGTTTTCATTGAACTCGATGTGCTCTATGATTCTGATACTAAGGCTGGATTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

135

Amino Acids

15.64

Weight (kDa)

4.51

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	21, 39
AcsI	RAATTY	2 cut(s)	62, 166
AfaI	GTAC	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	5 cut(s)	191, 206, 220, 289, 359
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	238
AluBI	AGCT	4 cut(s)	16, 161, 223, 322
AluI	AGCT	4 cut(s)	16, 161, 223, 322
Alw21I	GWGCWC	1 cut(s)	372
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	62, 166
AspLEI	GCGC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	90
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	21, 40
BlsI	GCNGC	2 cut(s)	22, 41
Bme1390I	CCNGG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	56, 314
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	153, 215
BseNI	ACTGG	2 cut(s)	56, 314
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	106, 284
BsmFI	GGGAC	2 cut(s)	106, 284
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	233, 372
BspACI	CCGC	2 cut(s)	21, 39
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	3 cut(s)	4, 154, 216
BspFNI	CGCG	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	56, 314
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	12, 162, 224, 387
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 45, 114, 256
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	9, 307
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	140
CviJI	RGCY	9 cut(s)	16, 58, 161, 223, 231, 250, 295, 322, 392
CviKI_1	RGCY	9 cut(s)	16, 58, 161, 223, 231, 250, 295, 322, 392
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	4 cut(s)	12, 162, 224, 387
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	233
FaiI	YATR	4 cut(s)	113, 130, 177, 375
FaqI	GGGAC	2 cut(s)	106, 284
Fnu4HI	GCNGC	2 cut(s)	21, 40
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	21, 40
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	21, 40
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	342, 377
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	243, 307
Hpy188I	TCNGA	1 cut(s)	382
Hpy8I	GTNNAC	2 cut(s)	243, 307
HpyCH4IV	ACGT	2 cut(s)	85, 273
HpyCH4V	TGCA	3 cut(s)	117, 197, 259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 45, 114, 256
HpyF3I	CTNAG	4 cut(s)	12, 162, 224, 387
HpySE526I	ACGT	2 cut(s)	85, 273
HspAI	GCGC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	37, 49, 75, 102, 156, 245, 295, 378
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	85, 273
MaeIII	GTNAC	3 cut(s)	81, 119, 208
MboII	GAAGA	2 cut(s)	60, 68
MhlI	GDGCHC	2 cut(s)	233, 372
MluCI	AATT	3 cut(s)	62, 98, 166
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	17, 219, 261, 356
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	151, 238
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	22, 45, 114, 256
OliI	CACNNNNGTG	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	22, 41
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	151, 238
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	21, 40
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	233, 372
SetI	ASST	6 cut(s)	18, 88, 163, 225, 276, 324
SfaNI	GCATC	1 cut(s)	246
SmiMI	CAYNNNNRTG	2 cut(s)	151, 238
Sse9I	AATT	3 cut(s)	62, 98, 166
SsiI	CCGC	2 cut(s)	21, 39
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	88
TaiI	ACGT	2 cut(s)	88, 276
TaqI	TCGA	4 cut(s)	104, 125, 279, 363
TasI	AATT	3 cut(s)	62, 98, 166
TauI	GCSGC	2 cut(s)	23, 42
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	16, 314
TspDTI	ATGAA	2 cut(s)	150, 343
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	16, 314
XapI	RAATTY	2 cut(s)	62, 166
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.