Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006283

Physical Location & Seq

Genomic Coordinates Reverse (-)

2284399 .. 2289444

Gene Structure 5046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G025000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACGCTCTCCCGCAAGACACGCTCCACCAGATCTTCTCCAGCCTTCCCCTCCGTCAGGTCATGATCTGCCGCTCACTCTCCAAGTTCTTCAACCACCTCCTTACCTCACCATCCTTCATACACCTCATCTCCACCCAATCGCCTCCCCTCAACCTCTTAGCCCTCCGCCCTCCTCACCACCACCACCACCGCCACGTATCCTCCCCTCCCTGCCTCCACGTGTTCGACCCCGACGACAACCAATGGCTCAGATTCAACCTAGATTTTCTTCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCCTCGGCTTCGTCTACCTCTGGGGCGAATCGCCCGACTCGCCTGAGTCCACCAAGTCACTCGTCGTCTGCAACCCTCTGACTCGCCAGTTCCGAGTCCTGCCCCAGCTCGGGTCTGCTTGGTCGCGCCACGGCTCGGTCCTCGTTGACTCCGAAACTCGAGTCATGGTCCTCACCGAGCTCGCCGCTCTCTACTTCTCCGGTTCAAACCAGTGGCTAAAGTTCTCATCCAACCTCCCTTCGAAACCCAGAAGCCCAATTTTGGTCTTTGACTCGGTTTACGCTCTCTGCGATGTGGGTTCGCCTTGGAGGAGTCAATGGAAGCTCTTTCATTGCACAATTTCAAAACTGAAGACCTCCCAGACGTGGACTCGGCTCGAAAAGCACGAGTGGGGGGACGTTTTTGACATCTTGAAACGACCCCGTTTGGTTCGCGGAAACGGGAACAAGGTTTTGATGGTTGGTGGGTTGAAATCGTCTTTCTCGCTGAATGCTTCGTGCTCGACGATTTTGATACTGAGGCTGGACTTGGATAGCTTGGAGTGGGACGAGGCAGGCCGAATGCCGGTGGACATGTTCAGGTGTTTTCAAGAATCGAGCAAGTTCAAGGTGTTTGGTAGCGGTGATAGGGTTTGTTTTTCGGCCAAGAGAATTGGGAAGTTGGCTTTGTGGGACCATTGTTCGGGGAAAGTCGAGTGGCGGTGGATTGATGGTGTGCCTGGAAGCGGCGATGGGCTTTGCCGGGGGTTTGTTTTTGAGGCCAGGCTCACTGCATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

362

Amino Acids

40.94

Weight (kDa)

9.13

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76920
fragaria_vesca	FvH4_2g14200 FvH4_2g14200 FvH4_3g14282
malus_domestica	MD05G1021300.v1.1 MD10G1022100.v1.1
prunus_persica	Prupe.8G025000_v2.0.a1 Prupe.8G025000_v2.0.a1
pyrus_communis	pycom05g01240 pycom10g01530
rosa_chinensis	RchiOBHm_Chr2g0119661 RchiOBHm_Chr6g0276341
rosa_laevigata	RLG00000004054 RLG00000013402 RLG00000034851
rosa_multiflora	Rmu_sc0000825.1_g000018
rosa_roxburghii	Rroxscaffold_7G00192360
rosa_rugosa	Rorug02G0346400 Rorug06G0100300.1 Rorug06G0193700 Rorug06G0302000
rosa_samantha	Rh4DG017200 Rh6AG211400 Rh6BG215800 Rh6CG218000 Rh6DG208100
rosa_wichuraiana	Rw6G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	75, 282, 491
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	2 cut(s)	430, 738
AcoI	YGGCCR	1 cut(s)	945
AcuI	CTGAAG	1 cut(s)	674
AcvI	CACGTG	1 cut(s)	223
AfiI	CCNNNNNNNGG	9 cut(s)	58, 413, 414, 439, 565, 669, 868, 985, 1028
AflIII	ACRYGT	2 cut(s)	222, 876
AgsI	TTSAA	8 cut(s)	94, 259, 510, 648, 718, 775, 893, 910
AjiI	CACGTC	1 cut(s)	669
AjnI	CCWGG	2 cut(s)	1021, 1064
AluBI	AGCT	4 cut(s)	412, 484, 628, 840
AluI	AGCT	4 cut(s)	412, 484, 628, 840
Alw21I	GWGCWC	2 cut(s)	486, 806
Ama87I	CYCGRG	2 cut(s)	413, 462
AoxI	GGCC	3 cut(s)	859, 945, 1062
ArsI	GACNNNNNNTTYG	2 cut(s)	450, 482
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	442, 472, 976
AsuC2I	CCSGG	1 cut(s)	1046
AsuHPI	GGTGA	4 cut(s)	102, 170, 469, 938
AsuII	TTCGAA	1 cut(s)	545
AvaI	CYCGRG	2 cut(s)	413, 462
AvaII	GGWCC	3 cut(s)	442, 472, 976
BanII	GRGCYC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	689
BbrPI	CACGTG	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	486, 806
BccI	CCATC	4 cut(s)	121, 754, 1007, 1028
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	2 cut(s)	1023, 1066
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	1046
BfaI	CTAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	3 cut(s)	73, 489, 1030
BlsI	GCNGC	3 cut(s)	74, 490, 1031
Bme1390I	CCNGG	3 cut(s)	1023, 1046, 1066
Bme18I	GGWCC	3 cut(s)	442, 472, 976
BmeT110I	CYCGRG	2 cut(s)	413, 462
BmgBI	CACGTC	1 cut(s)	669
BmgT120I	GGNCC	3 cut(s)	442, 472, 976
BmiI	GGNNCC	1 cut(s)	977
BmrFI	CCNGG	3 cut(s)	1023, 1046, 1066
BpiI	GAAGAC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	1046
BsaAI	YACGTR	2 cut(s)	199, 223
BsaJI	CCNNGG	4 cut(s)	307, 433, 608, 1045
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 188, 218
Bsc4I	CCNNNNNNNGG	9 cut(s)	58, 413, 414, 439, 565, 669, 868, 985, 1028
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	2 cut(s)	391, 514
Bse3DI	GCAATG	2 cut(s)	634, 1076
BseBI	CCWGG	2 cut(s)	1023, 1066
BseDI	CCNNGG	4 cut(s)	307, 433, 608, 1045
BseGI	GGATG	2 cut(s)	113, 530
BseLI	CCNNNNNNNGG	9 cut(s)	58, 413, 414, 439, 565, 669, 868, 985, 1028
BseMI	GCAATG	2 cut(s)	634, 1076
BseMII	CTCAG	3 cut(s)	265, 339, 812
BseNI	ACTGG	2 cut(s)	391, 514
BseRI	GAGGAG	3 cut(s)	165, 292, 628
BseYI	CCCAGC	1 cut(s)	408
Bsh1236I	CGCG	2 cut(s)	430, 738
BshFI	GGCC	3 cut(s)	861, 947, 1064
BsiHKAI	GWGCWC	2 cut(s)	486, 806
BsiHKCI	CYCGRG	2 cut(s)	413, 462
BsiSI	CCGG	3 cut(s)	504, 869, 1045
BslFI	GGGAC	3 cut(s)	713, 863, 989
BslI	CCNNNNNNNGG	9 cut(s)	58, 413, 414, 439, 565, 669, 868, 985, 1028
BsmFI	GGGAC	3 cut(s)	713, 863, 989
BsmI	GAATGC	2 cut(s)	799, 870
BsnI	GGCC	3 cut(s)	861, 947, 1064
BsoBI	CYCGRG	2 cut(s)	413, 462
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	486, 806
Bsp143I	GATC	2 cut(s)	33, 66
BspANI	GGCC	3 cut(s)	861, 947, 1064
BspCNI	CTCAG	3 cut(s)	264, 340, 813
BspFNI	CGCG	2 cut(s)	430, 738
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	977
BspT104I	TTCGAA	1 cut(s)	545
BsrBI	CCGCTC	3 cut(s)	75, 282, 491
BsrDI	GCAATG	2 cut(s)	634, 1076
BsrFI	RCCGGY	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	391, 514
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	4 cut(s)	307, 433, 608, 1045
BssMI	GATC	2 cut(s)	33, 66
BssSI	CACGAG	1 cut(s)	689
BssT1I	CCWWGG	1 cut(s)	608
Bst2BI	CACGAG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	1023, 1066
BstBAI	YACGTR	2 cut(s)	199, 223
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	486, 859
BstDEI	CTNAG	4 cut(s)	160, 251, 348, 821
BstDSI	CCRYGG	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	113, 530
BstFNI	CGCG	2 cut(s)	430, 738
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	36, 69
BstMBI	GATC	2 cut(s)	33, 66
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 343, 685
BstNI	CCWGG	2 cut(s)	1023, 1066
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	3 cut(s)	1021, 1044, 1064
BstUI	CGCG	2 cut(s)	430, 738
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	861, 947, 1064
BtgI	CCRYGG	1 cut(s)	433
BtgZI	GCGATG	2 cut(s)	609, 1047
BtrI	CACGTC	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	113, 530
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	2 cut(s)	521, 1071
Cac8I	GCNNGC	2 cut(s)	486, 859
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	442, 472, 976
CseI	GACGC	1 cut(s)	14
CviAII	CATG	3 cut(s)	64, 469, 877
DdeI	CTNAG	4 cut(s)	160, 251, 348, 821
DpnI	GATC	2 cut(s)	35, 68
DpnII	GATC	2 cut(s)	33, 66
EaeI	YGGCCR	1 cut(s)	945
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	3 cut(s)	442, 472, 976
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	674
Eco72I	CACGTG	1 cut(s)	223
Eco88I	CYCGRG	2 cut(s)	413, 462
EcoICRI	GAGCTC	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	1021, 1064
EcoT14I	CCWWGG	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	3 cut(s)	67, 472, 880
FaiI	YATR	4 cut(s)	65, 122, 470, 878
FaqI	GGGAC	3 cut(s)	713, 863, 989
FatI	CATG	3 cut(s)	63, 468, 876
FauI	CCCGC	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	73, 489, 1030
FokI	GGATG	2 cut(s)	100, 517
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	3 cut(s)	73, 489, 1030
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	3 cut(s)	73, 489, 1030
GsaI	CCCAGC	1 cut(s)	412
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	861, 947, 1064
HapII	CCGG	3 cut(s)	504, 869, 1045
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	67, 472, 880
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HpaII	CCGG	3 cut(s)	504, 869, 1045
HphI	GGTGA	4 cut(s)	102, 170, 469, 938
Hpy166II	GTNNAC	6 cut(s)	319, 354, 451, 583, 672, 874
Hpy188I	TCNGA	4 cut(s)	254, 384, 398, 457
Hpy188III	TCNNGA	3 cut(s)	64, 715, 893
Hpy8I	GTNNAC	6 cut(s)	319, 354, 451, 583, 672, 874
Hpy99I	CGWCG	4 cut(s)	239, 299, 371, 811
HpyAV	CCTTC	4 cut(s)	56, 127, 286, 552
HpyCH4IV	ACGT	4 cut(s)	198, 222, 668, 702
HpyCH4V	TGCA	3 cut(s)	375, 639, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 343, 685
HpyF3I	CTNAG	4 cut(s)	160, 251, 348, 821
HpySE526I	ACGT	4 cut(s)	198, 222, 668, 702
Hsp92II	CATG	3 cut(s)	67, 472, 880
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	33, 66
LmnI	GCTCC	2 cut(s)	30, 287
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	4 cut(s)	198, 222, 668, 702
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	35, 68
MbiI	CCGCTC	3 cut(s)	75, 282, 491
MboI	GATC	2 cut(s)	33, 66
MboII	GAAGA	4 cut(s)	28, 82, 263, 667
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	486, 806
MluCI	AATT	3 cut(s)	561, 642, 954
MlyI	GAGTC	9 cut(s)	335, 359, 379, 408, 446, 474, 569, 625, 667
MmeI	TCCRAC	1 cut(s)	558
MspI	CCGG	3 cut(s)	504, 869, 1045
MspR9I	CCNGG	3 cut(s)	1023, 1046, 1066
Mva1269I	GAATGC	2 cut(s)	799, 870
MvaI	CCWGG	2 cut(s)	1023, 1066
MvnI	CGCG	2 cut(s)	430, 738
MwoI	GCNNNNNNNGC	3 cut(s)	22, 343, 685
NciI	CCSGG	1 cut(s)	1046
NdeII	GATC	2 cut(s)	33, 66
NlaIII	CATG	3 cut(s)	67, 472, 880
NlaIV	GGNNCC	1 cut(s)	977
NmeAIII	GCCGAG	2 cut(s)	288, 655
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	880
NspV	TTCGAA	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	462
PagI	TCATGA	1 cut(s)	63
PciI	ACATGT	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	6 cut(s)	234, 394, 453, 591, 687, 806
PctI	GAATGC	2 cut(s)	799, 870
PfeI	GAWTC	3 cut(s)	255, 332, 896
PkrI	GCNGC	3 cut(s)	74, 490, 1031
PleI	GAGTC	9 cut(s)	335, 358, 379, 407, 446, 473, 569, 624, 667
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
PpsI	GAGTC	9 cut(s)	335, 358, 379, 407, 446, 473, 569, 624, 667
Ppu21I	YACGTR	2 cut(s)	199, 223
PscI	ACATGT	1 cut(s)	876
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	1021, 1064
PspCI	CACGTG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	2 cut(s)	1021, 1064
PspN4I	GGNNCC	1 cut(s)	977
PspPI	GGNCC	3 cut(s)	442, 472, 976
PspXI	VCTCGAGB	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	486
SatI	GCNGC	3 cut(s)	73, 489, 1030
Sau3AI	GATC	2 cut(s)	33, 66
Sau96I	GGNCC	3 cut(s)	442, 472, 976
SchI	GAGTC	9 cut(s)	335, 359, 379, 408, 446, 474, 569, 625, 667
ScrFI	CCNGG	3 cut(s)	1023, 1046, 1066
SduI	GDGCHC	2 cut(s)	486, 806
Sfr274I	CTCGAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	3 cut(s)	442, 472, 976
SlaI	CTCGAG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	3 cut(s)	561, 642, 954
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	1021, 1044, 1064
StyI	CCWWGG	1 cut(s)	608
TaiI	ACGT	4 cut(s)	201, 225, 671, 705
TaqI	TCGA	7 cut(s)	228, 463, 545, 681, 806, 899, 996
TaqII	GACCGA	1 cut(s)	430
TasI	AATT	3 cut(s)	561, 642, 954
TauI	GCSGC	3 cut(s)	75, 491, 1032
TfiI	GAWTC	3 cut(s)	255, 332, 896
TscAI	CASTG	2 cut(s)	521, 1078
TseFI	GTSAC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	109, 623
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	521, 1078
VpaK11BI	GGWCC	3 cut(s)	442, 472, 976
XagI	CCTNNNNNAGG	1 cut(s)	56
XceI	RCATGY	1 cut(s)	880
XhoI	CTCGAG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.