Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

29073840 .. 29074893

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTTGACCAGAGTCCTCGCCGTGTTGTCGTGGCGGCGCTCCTATTGTTTGTGGTTCTGTGCGATCTTTCGAATTCTGCGGGAGCTGCGAATTCTGTGTCAGCTTTCGTTCAGAACGCCATCTTGTCCAACAAGATTGTCATCTTCTCCAAATCCTACTGCCCGTATTGTTTGCGGTCGAAACGTATATTCAGCCAACTTAAGGAAGAGCCATTTGTTGTGGAGCTTGATCAGAGAGAGGACGGAGATCAAATCCAGTATGAGCTTTTAGAATTCGTTGGTCGTCGTACTGTCCCGCAAGTTTTTGTTAACGGCAAGCATATTGGTGGATCAGATGATCTTGGAGCTGCTTTGGAGAGTGGTCAGTTGCAAAAGCTTCTTGCTGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

5.78

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	46 - 78	1.7e-06	Glutaredoxin
Glutaredoxin	PF00462	109 - 134	2.3e-06	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	35, 80, 175, 296
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	3 cut(s)	73, 91, 272
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflII	CTTAAG	1 cut(s)	200
AluBI	AGCT	6 cut(s)	86, 104, 226, 265, 347, 376
AluI	AGCT	6 cut(s)	86, 104, 226, 265, 347, 376
AlwI	GGATC	1 cut(s)	337
ApeKI	GCWGC	3 cut(s)	86, 347, 383
ApoI	RAATTY	3 cut(s)	73, 91, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	73, 334, 370
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	2 cut(s)	6, 328
BclI	TGATCA	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	4 cut(s)	36, 87, 348, 384
BlsI	GCNGC	4 cut(s)	37, 88, 349, 385
BoxI	GACNNNNGTC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	3 cut(s)	73, 334, 370
Bsh1285I	CGRYCG	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	64, 229, 247, 329, 337
BspACI	CCGC	4 cut(s)	35, 80, 175, 296
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	5 cut(s)	64, 229, 247, 329, 337
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	5 cut(s)	67, 232, 250, 332, 340
BstMBI	GATC	5 cut(s)	64, 229, 247, 329, 337
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstPAI	GACNNNNGTC	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	73, 334, 370
Cac8I	GCNNGC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	288
CviJI	RGCY	8 cut(s)	86, 104, 195, 211, 226, 265, 347, 376
CviKI_1	RGCY	8 cut(s)	86, 104, 195, 211, 226, 265, 347, 376
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	5 cut(s)	66, 231, 249, 331, 339
DpnII	GATC	5 cut(s)	64, 229, 247, 329, 337
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EcoRI	GAATTC	3 cut(s)	73, 91, 272
FaiI	YATR	3 cut(s)	188, 261, 321
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	2 cut(s)	73, 303
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	36, 87, 348, 384
Fsp4HI	GCNGC	4 cut(s)	36, 87, 348, 384
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	4 cut(s)	36, 87, 348, 384
HaeII	RGCGCY	1 cut(s)	41
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	7, 310
HindII	GTYRAC	2 cut(s)	7, 310
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	7, 310
Hpy188I	TCNGA	3 cut(s)	114, 234, 334
Hpy8I	GTNNAC	2 cut(s)	7, 310
Hpy99I	CGWCG	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	370, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	184
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	64, 229, 247, 329, 337
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	45, 83, 223, 344
LpnPI	CCDG	2 cut(s)	23, 269
Lsp1109I	GCAGC	3 cut(s)	73, 334, 370
MaeII	ACGT	1 cut(s)	184
MalI	GATC	5 cut(s)	66, 231, 249, 331, 339
MboI	GATC	5 cut(s)	64, 229, 247, 329, 337
MboII	GAAGA	2 cut(s)	136, 218
MluCI	AATT	3 cut(s)	73, 91, 272
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	27, 232
MseI	TTAA	2 cut(s)	201, 309
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	5 cut(s)	64, 229, 247, 329, 337
NspV	TTCGAA	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	37, 88, 349, 385
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PshAI	GACNNNNGTC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	201, 309
SatI	GCNGC	4 cut(s)	36, 87, 348, 384
Sau3AI	GATC	5 cut(s)	64, 229, 247, 329, 337
SchI	GAGTC	1 cut(s)	22
SetI	ASST	7 cut(s)	88, 106, 187, 228, 267, 349, 378
SfuI	TTCGAA	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	73, 91, 272
SsiI	CCGC	4 cut(s)	35, 80, 175, 296
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	71, 179
TasI	AATT	3 cut(s)	73, 91, 272
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	201, 309
Tru9I	TTAA	2 cut(s)	201, 309
TseI	GCWGC	3 cut(s)	86, 347, 383
TspGWI	ACGGA	1 cut(s)	258
Vha464I	CTTAAG	1 cut(s)	200
XapI	RAATTY	3 cut(s)	73, 91, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.