Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003340.1

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

22237 .. 27251

Gene Structure 5015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003340.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggggaggtcggagtttgtgatcgtcacggtggcggcggttctgctgttgttgggaaacgacgtcgctgaggcttcgagttcaccatcggcgtttgtgcagaacgtcatctactccaacaagattgccatcttctccaaatcgtattgcccgtattgcttgcgtgccaagcgcatattcagtgaattacatgagcaaccttatgttgtagaacttgatcttcgagatgatggggggcaaattcagagtgttcttctagatgtggtaggccgatccactgtcccacaagtatttgtgaatggcaagcacatcggtggttctgatgatctcaaagccgctgttgcgagtggccaacttcagaagcttcttagcataacaaacagtgtggcccatagattggcacaccttgctagtgttgattacttagatgattactggttagatgagacttctgtgattatcggggatgctctctttgaggattcttgtactagtactcgaggtgtagtgctaattgcatcatccggcattagggctggcaatggggagggtagggtaaggggattaaattatcatccccatacccgacttcattcctcatccccttacccgccccaatgtgataccccggaaattcgtaattattttcctaggacccgacagaaacccatcgacccgaccagactggttctctcacctccggccacctctagcgacgggacaagccgaaaacgactcagaccagcctcgtgctttgctctgtggtgttggtttgcacggtggttcaccgaaaagtggagatcggagcagctacagttgacgcgatcgagacccggatcaagggttgaagatcaatggtgcacagtgaatctggagcttgatcagacggcagcgattgaccgatcttgcaggcttgatctaggacgatctaggccaaaccagacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

315

Amino Acids

35.05

Weight (kDa)

8.4

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccII	CGCG	1 cut(s)	823
AciI	CCGC	4 cut(s)	35, 38, 336, 611
AclWI	GGATC	2 cut(s)	267, 844
AcoI	YGGCCR	2 cut(s)	349, 702
AcsI	RAATTY	2 cut(s)	240, 633
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	490, 496
AfiI	CCNNNNNNNGG	4 cut(s)	397, 531, 795, 840
AgsI	TTSAA	1 cut(s)	848
AhlI	ACTAGT	1 cut(s)	491
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	364, 811, 877
AluI	AGCT	3 cut(s)	364, 811, 877
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	2 cut(s)	440, 823
Alw44I	GTGCAC	1 cut(s)	859
AlwI	GGATC	2 cut(s)	267, 844
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	5 cut(s)	268, 349, 387, 702, 932
ApaLI	GTGCAC	1 cut(s)	859
ApeKI	GCWGC	2 cut(s)	808, 890
ApoI	RAATTY	2 cut(s)	240, 633
AspA2I	CCTAGG	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	388, 654
AsuC2I	CCSGG	2 cut(s)	629, 834
AsuHPI	GGTGA	3 cut(s)	75, 687, 778
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	654
AvrII	CCTAGG	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	351
BauI	CACGAG	1 cut(s)	748
Bbv12I	GWGCWC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	820, 902
BccI	CCATC	4 cut(s)	94, 137, 224, 677
BceAI	ACGGC	1 cut(s)	903
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	2 cut(s)	629, 834
BcoDI	GTCTC	2 cut(s)	440, 823
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	7 cut(s)	257, 411, 492, 651, 711, 920, 930
BfmI	CTRYAG	1 cut(s)	812
BisI	GCNGC	4 cut(s)	36, 336, 809, 891
BlnI	CCTAGG	1 cut(s)	650
BlsI	GCNGC	4 cut(s)	37, 337, 810, 892
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	629, 834
Bme18I	GGWCC	1 cut(s)	654
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	388, 654
BmiI	GGNNCC	1 cut(s)	656
BmrFI	CCNGG	2 cut(s)	629, 834
BmsI	GCATC	2 cut(s)	457, 527
BpmI	CTGGAG	1 cut(s)	893
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	629, 834
BsaBI	GATNNNNATC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	2 cut(s)	627, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	397, 531, 795, 840
Bse1I	ACTGG	2 cut(s)	440, 690
Bse3DI	GCAATG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	627, 650
BseGI	GGATG	4 cut(s)	472, 521, 574, 599
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	4 cut(s)	397, 531, 795, 840
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	60, 751
BseNI	ACTGG	2 cut(s)	440, 690
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	2 cut(s)	820, 902
BsgI	GTGCAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	823
Bsh1285I	CGRYCG	1 cut(s)	827
BshFI	GGCC	5 cut(s)	270, 351, 389, 704, 934
BsiEI	CGRYCG	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	863
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	4 cut(s)	525, 629, 701, 834
BslFI	GGGAC	2 cut(s)	266, 733
BslI	CCNNNNNNNGG	4 cut(s)	397, 531, 795, 840
BsmAI	GTCTC	2 cut(s)	440, 823
BsmFI	GGGAC	2 cut(s)	266, 733
BsnI	GGCC	5 cut(s)	270, 351, 389, 704, 934
Bso31I	GGTCTC	1 cut(s)	823
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	863
BspACI	CCGC	4 cut(s)	35, 38, 336, 611
BspANI	GGCC	5 cut(s)	270, 351, 389, 704, 934
BspCNI	CTCAG	2 cut(s)	61, 750
BspFNI	CGCG	1 cut(s)	823
BspLI	GGNNCC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	267, 844
BspTNI	GGTCTC	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	440, 690
BssECI	CCNNGG	2 cut(s)	627, 650
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	748
Bst4CI	ACNGT	6 cut(s)	31, 280, 383, 780, 816, 865
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	5 cut(s)	161, 165, 305, 538, 911
BstDEI	CTNAG	5 cut(s)	69, 368, 424, 737, 945
BstF5I	GGATG	4 cut(s)	472, 521, 574, 599
BstFNI	CGCG	1 cut(s)	823
BstHHI	GCGC	1 cut(s)	174
BstMAI	GTCTC	2 cut(s)	440, 823
BstMCI	CGRYCG	1 cut(s)	827
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 169, 341, 407
BstSCI	CCNGG	2 cut(s)	627, 832
BstSFI	CTRYAG	1 cut(s)	812
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	823
BstV1I	GCAGC	2 cut(s)	820, 902
BsuRI	GGCC	5 cut(s)	270, 351, 389, 704, 934
BtsCI	GGATG	4 cut(s)	472, 521, 574, 599
BtsIMutI	CAGTG	4 cut(s)	187, 276, 388, 870
Cac8I	GCNNGC	5 cut(s)	161, 165, 305, 538, 911
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	388, 654
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	489, 495
CspCI	CAANNNNNGTGG	2 cut(s)	366, 401
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	2 cut(s)	489, 495
DdeI	CTNAG	5 cut(s)	69, 368, 424, 737, 945
EaeI	YGGCCR	2 cut(s)	349, 702
Eco130I	CCWWGG	1 cut(s)	650
Eco31I	GGTCTC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	1 cut(s)	194
FaiI	YATR	6 cut(s)	176, 192, 204, 374, 393, 582
FaqI	GGGAC	2 cut(s)	266, 733
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	618
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	4 cut(s)	36, 336, 809, 891
FokI	GGATG	4 cut(s)	479, 508, 561, 586
Fsp4HI	GCNGC	4 cut(s)	36, 336, 809, 891
FspBI	CTAG	7 cut(s)	257, 411, 492, 651, 711, 920, 930
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	36, 336, 809, 891
GsuI	CTGGAG	1 cut(s)	893
HaeIII	GGCC	5 cut(s)	270, 351, 389, 704, 934
HapII	CCGG	4 cut(s)	525, 629, 701, 834
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	482, 735, 868
HpaII	CCGG	4 cut(s)	525, 629, 701, 834
HphI	GGTGA	3 cut(s)	75, 687, 778
Hpy166II	GTNNAC	4 cut(s)	83, 786, 819, 861
Hpy188I	TCNGA	7 cut(s)	13, 246, 322, 360, 740, 805, 885
Hpy188III	TCNNGA	4 cut(s)	224, 257, 828, 872
Hpy8I	GTNNAC	4 cut(s)	83, 786, 819, 861
Hpy99I	CGWCG	3 cut(s)	65, 68, 719
HpyCH4III	ACNGT	6 cut(s)	31, 280, 383, 780, 816, 865
HpyCH4IV	ACGT	2 cut(s)	63, 105
HpyCH4V	TGCA	5 cut(s)	100, 518, 776, 861, 909
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 169, 341, 407
HpyF3I	CTNAG	5 cut(s)	69, 368, 424, 737, 945
HpySE526I	ACGT	2 cut(s)	63, 105
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	880
LmnI	GCTCC	2 cut(s)	805, 874
Lsp1109I	GCAGC	2 cut(s)	820, 902
LweI	GCATC	2 cut(s)	457, 527
MaeI	CTAG	7 cut(s)	257, 411, 492, 651, 711, 920, 930
MaeII	ACGT	2 cut(s)	63, 105
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	124, 212, 245, 860
MhlI	GDGCHC	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	6 cut(s)	185, 240, 513, 568, 633, 640
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	729
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	64, 472, 494, 541, 607, 708, 718, 757
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	4 cut(s)	525, 629, 701, 834
MspR9I	CCNGG	2 cut(s)	629, 834
MvnI	CGCG	1 cut(s)	823
MwoI	GCNNNNNNNGC	4 cut(s)	156, 169, 341, 407
NciI	CCSGG	2 cut(s)	629, 834
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	656
NmuCI	GTSAC	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	482, 868
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	37, 337, 810, 892
Ple19I	CGATCG	1 cut(s)	827
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
PpuMI	RGGWCCY	1 cut(s)	654
Psp5II	RGGWCCY	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	656
PspPI	GGNCC	2 cut(s)	388, 654
PspPPI	RGGWCCY	1 cut(s)	654
PspXI	VCTCGAGB	1 cut(s)	498
PsrI	GAACNNNNNNTAC	2 cut(s)	95, 127
PvuI	CGATCG	1 cut(s)	827
RsaI	GTAC	2 cut(s)	490, 496
RsaNI	GTAC	2 cut(s)	489, 495
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	4 cut(s)	36, 336, 809, 891
Sau96I	GGNCC	2 cut(s)	388, 654
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	629, 834
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	2 cut(s)	457, 527
SfcI	CTRYAG	1 cut(s)	812
Sfr274I	CTCGAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	6 cut(s)	185, 240, 513, 568, 633, 640
SsiI	CCGC	4 cut(s)	35, 38, 336, 611
SspMI	CTAG	7 cut(s)	257, 411, 492, 651, 711, 920, 930
StyD4I	CCNGG	2 cut(s)	627, 832
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	6 cut(s)	31, 280, 383, 780, 816, 865
TaiI	ACGT	2 cut(s)	66, 108
TaqI	TCGA	5 cut(s)	77, 223, 499, 672, 827
TaqII	GACCGA	1 cut(s)	915
TasI	AATT	6 cut(s)	185, 240, 513, 568, 633, 640
TatI	WGTACW	2 cut(s)	488, 494
TauI	GCSGC	2 cut(s)	38, 338
TfiI	GAWTC	2 cut(s)	482, 868
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	4 cut(s)	187, 283, 388, 870
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	808, 890
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	581
TspRI	CASTG	4 cut(s)	187, 283, 388, 870
Van91I	CCANNNNNTGG	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	654
XapI	RAATTY	2 cut(s)	240, 633
XbaI	TCTAGA	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	498
XmaJI	CCTAGG	1 cut(s)	650
XspI	CTAG	7 cut(s)	257, 411, 492, 651, 711, 920, 930
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.