Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

16873033 .. 16877256

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G163800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGACACGGCCGCGCATCGTCGTTGTCTGCGCGCGCTCATACCGTACACCCCAGCGCCAGCCAATCACAAACCGCCAGAAATAGAGAATGCCCGAACCCACACGTGCCTGGCCATGAGAGGAGGAGCTATAAGCATCAGAATCTCCAGACTCAACCCAGCGCGACCACGACGACCCTTCTGCGTTCGCGCCACCACCACCGCCCAGAACTCCATGGACGACCGCGAAGGCGATGCAGCTAAAAAGACCCAAGCCACTCAACCAATCGAAGCAGCGAAGTCGAAGGAAGAAGAATTGAAACCCGTCAAGGAAGCGGTTCCTCCGCCGCCGCCCCCCGAGAAGCCGGAGCCCGGCGATTGCTGCGGAAGCGGATGCGTCCGGTGCGTCTGGGATGTGTATTACGACGAGCTCGACGAATACAACAAGCTCTACAAAAAGCGATCGTCGTGTCGTCGTGGGAAGATGCGTAGGTTTGAGTTGTTGGGCTGTGCTGCGATCGCGGCGGTGGCGGCGGCTCTGGTATTGTTGGGAAACGTCGTCGTCGCGGAAGCTTCGACTTCGCCTTCGGCGTTCGTACAAAATGTCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCCTATTGCCCGTATTGCTTGCGTGCCAAGCGCATATTCAGTGAATTGCATGAGCAACCTTTTGTCGTCGAACTTGATCTTCGAGATGATGGAGCCCAAATTCAGAGTGTTCTGCTAGATATAGTAGGCCGAACCACTGTCCCGCAAATATTTGTGAATGGAAAGCACATTGGCGGCTCTGATGACCTCAAAGCTGCAGTTCTGAGTGGTCAACTTCAGAAACTTCTTAGTATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

286

Amino Acids

31.27

Weight (kDa)

9.01

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	8 cut(s)	14, 33, 35, 163, 189, 225, 500, 545
AcoI	YGGCCR	2 cut(s)	9, 111
AcsI	RAATTY	1 cut(s)	717
AcuI	CTGAAG	1 cut(s)	818
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	47, 576
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AluBI	AGCT	6 cut(s)	128, 239, 409, 427, 551, 812
AluI	AGCT	6 cut(s)	128, 239, 409, 427, 551, 812
Alw21I	GWGCWC	1 cut(s)	411
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	3 cut(s)	9, 111, 745
ApeKI	GCWGC	5 cut(s)	236, 272, 360, 491, 812
ApoI	RAATTY	1 cut(s)	717
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AsiSI	GCGATCGC	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	8 cut(s)	16, 33, 35, 37, 58, 163, 191, 651
AsuC2I	CCSGG	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	3 cut(s)	351, 411, 715
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	248, 284, 347, 478, 799
BccI	CCATC	2 cut(s)	614, 701
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	6 cut(s)	162, 196, 215, 249, 261, 295
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	351
BfaI	CTAG	1 cut(s)	734
BfmI	CTRYAG	1 cut(s)	813
BfoI	RGCGCY	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	110, 351
BmeT110I	CYCGRG	1 cut(s)	335
BmiI	GGNNCC	3 cut(s)	318, 348, 712
BmrFI	CCNGG	2 cut(s)	110, 351
BmsI	GCATC	5 cut(s)	25, 144, 223, 362, 453
BpmI	CTGGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	377, 397
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	812
BsePI	GCGCGC	2 cut(s)	31, 33
BseRI	GAGGAG	2 cut(s)	135, 138
BseX3I	CGGCCG	1 cut(s)	9
BseXI	GCAGC	5 cut(s)	248, 284, 347, 478, 799
BseYI	CCCAGC	2 cut(s)	52, 157
Bsh1236I	CGCG	8 cut(s)	14, 33, 35, 163, 189, 225, 500, 545
Bsh1285I	CGRYCG	4 cut(s)	12, 223, 443, 498
BshFI	GGCC	3 cut(s)	11, 113, 747
BsiEI	CGRYCG	4 cut(s)	12, 223, 443, 498
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	344, 351, 379
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	743
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	11, 113, 747
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	3 cut(s)	351, 411, 715
Bsp143I	GATC	3 cut(s)	440, 495, 694
Bsp19I	CCATGG	1 cut(s)	213
BspANI	GGCC	3 cut(s)	11, 113, 747
BspCNI	CTCAG	1 cut(s)	813
BspFNI	CGCG	8 cut(s)	14, 33, 35, 163, 189, 225, 500, 545
BspLI	GGNNCC	3 cut(s)	318, 348, 712
BspMAI	CTGCAG	1 cut(s)	817
BssECI	CCNNGG	1 cut(s)	213
BssHII	GCGCGC	2 cut(s)	31, 33
BssMI	GATC	3 cut(s)	440, 495, 694
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	45, 757
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	5 cut(s)	33, 35, 60, 638, 642
BstDEI	CTNAG	2 cut(s)	821, 845
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	377, 397
BstFNI	CGCG	8 cut(s)	14, 33, 35, 163, 189, 225, 500, 545
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	8 cut(s)	16, 33, 35, 37, 58, 163, 191, 651
BstKTI	GATC	3 cut(s)	443, 498, 697
BstMBI	GATC	3 cut(s)	440, 495, 694
BstMCI	CGRYCG	4 cut(s)	12, 223, 443, 498
BstMWI	GCNNNNNNNGC	9 cut(s)	360, 366, 381, 497, 500, 506, 509, 633, 646
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 349
BstSFI	CTRYAG	1 cut(s)	813
BstUI	CGCG	8 cut(s)	14, 33, 35, 163, 189, 225, 500, 545
BstV1I	GCAGC	5 cut(s)	248, 284, 347, 478, 799
BstZI	CGGCCG	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	11, 113, 747
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	377, 397
BtsIMutI	CAGTG	2 cut(s)	664, 753
Cac8I	GCNNGC	5 cut(s)	33, 35, 60, 638, 642
CfoI	GCGC	8 cut(s)	16, 33, 35, 37, 58, 163, 191, 651
CseI	GACGC	2 cut(s)	364, 373
Csp6I	GTAC	2 cut(s)	46, 575
CviAII	CATG	3 cut(s)	115, 214, 668
CviQI	GTAC	2 cut(s)	46, 575
DdeI	CTNAG	2 cut(s)	821, 845
DpnI	GATC	3 cut(s)	442, 497, 696
DpnII	GATC	3 cut(s)	440, 495, 694
EaeI	YGGCCR	2 cut(s)	9, 111
EagI	CGGCCG	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	409
EclXI	CGGCCG	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	3 cut(s)	351, 411, 715
Eco52I	CGGCCG	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	818
Eco72I	CACGTG	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	3 cut(s)	351, 411, 715
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	118, 217, 671
FaiI	YATR	7 cut(s)	41, 116, 131, 215, 653, 669, 740
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	3 cut(s)	114, 213, 667
FauI	CCCGC	1 cut(s)	768
FokI	GGATG	2 cut(s)	384, 404
FriOI	GRGCYC	3 cut(s)	351, 411, 715
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	8 cut(s)	15, 32, 34, 36, 57, 162, 190, 650
GsaI	CCCAGC	2 cut(s)	56, 161
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	11, 113, 747
HapII	CCGG	3 cut(s)	344, 351, 379
HgaI	GACGC	2 cut(s)	364, 373
HhaI	GCGC	8 cut(s)	16, 33, 35, 37, 58, 163, 191, 651
Hin1II	CATG	3 cut(s)	118, 217, 671
Hin6I	GCGC	8 cut(s)	14, 31, 33, 35, 56, 161, 189, 649
HinP1I	GCGC	8 cut(s)	14, 31, 33, 35, 56, 161, 189, 649
HincII	GTYRAC	1 cut(s)	830
HindII	GTYRAC	1 cut(s)	830
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	2 cut(s)	141, 150
HpaII	CCGG	3 cut(s)	344, 351, 379
Hpy166II	GTNNAC	2 cut(s)	48, 830
Hpy188I	TCNGA	5 cut(s)	140, 723, 799, 822, 837
Hpy188III	TCNNGA	2 cut(s)	147, 701
Hpy8I	GTNNAC	2 cut(s)	48, 830
HpyAV	CCTTC	4 cut(s)	187, 221, 277, 573
HpyCH4III	ACNGT	2 cut(s)	45, 757
HpyCH4IV	ACGT	2 cut(s)	104, 534
HpyCH4V	TGCA	3 cut(s)	236, 667, 815
HpyF10VI	GCNNNNNNNGC	9 cut(s)	360, 366, 381, 497, 500, 506, 509, 633, 646
HpyF3I	CTNAG	2 cut(s)	821, 845
HpySE526I	ACGT	2 cut(s)	104, 534
Hsp92II	CATG	3 cut(s)	118, 217, 671
HspAI	GCGC	8 cut(s)	14, 31, 33, 35, 56, 161, 189, 649
Kzo9I	GATC	3 cut(s)	440, 495, 694
LmnI	GCTCC	3 cut(s)	125, 346, 710
Lsp1109I	GCAGC	5 cut(s)	248, 284, 347, 478, 799
LweI	GCATC	5 cut(s)	25, 144, 223, 362, 453
MaeI	CTAG	1 cut(s)	734
MaeII	ACGT	2 cut(s)	104, 534
MalI	GATC	3 cut(s)	442, 497, 696
MboI	GATC	3 cut(s)	440, 495, 694
MboII	GAAGA	5 cut(s)	299, 302, 472, 601, 689
MhlI	GDGCHC	3 cut(s)	351, 411, 715
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	3 cut(s)	293, 662, 717
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	113, 116, 330, 815
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	344, 351, 379
MspR9I	CCNGG	2 cut(s)	110, 351
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	8 cut(s)	14, 33, 35, 163, 189, 225, 500, 545
MwoI	GCNNNNNNNGC	9 cut(s)	360, 366, 381, 497, 500, 506, 509, 633, 646
NciI	CCSGG	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	440, 495, 694
NlaIII	CATG	3 cut(s)	118, 217, 671
NlaIV	GGNNCC	3 cut(s)	318, 348, 712
PauI	GCGCGC	2 cut(s)	31, 33
PcsI	WCGNNNNNNNCGW	3 cut(s)	408, 411, 566
PctI	GAATGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	141
Ple19I	CGATCG	2 cut(s)	443, 498
PleI	GAGTC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	105
PspFI	CCCAGC	2 cut(s)	52, 157
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	318, 348, 712
PstI	CTGCAG	1 cut(s)	817
PteI	GCGCGC	2 cut(s)	31, 33
PvuI	CGATCG	2 cut(s)	443, 498
RgaI	GCGATCGC	1 cut(s)	498
RsaI	GTAC	2 cut(s)	47, 576
RsaNI	GTAC	2 cut(s)	46, 575
SacI	GAGCTC	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	440, 495, 694
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	110, 351
SduI	GDGCHC	3 cut(s)	351, 411, 715
SfaAI	GCGATCGC	1 cut(s)	498
SfaNI	GCATC	5 cut(s)	25, 144, 223, 362, 453
SfcI	CTRYAG	1 cut(s)	813
SgfI	GCGATCGC	1 cut(s)	498
Sse9I	AATT	3 cut(s)	293, 662, 717
SspI	AATATT	1 cut(s)	768
SspMI	CTAG	1 cut(s)	734
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	108, 349
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	45, 757
TaiI	ACGT	2 cut(s)	107, 537
TaqI	TCGA	6 cut(s)	267, 281, 411, 554, 687, 700
TasI	AATT	3 cut(s)	293, 662, 717
TauI	GCSGC	7 cut(s)	14, 328, 331, 503, 512, 515, 795
TfiI	GAWTC	1 cut(s)	141
TscAI	CASTG	2 cut(s)	664, 760
TseI	GCWGC	5 cut(s)	236, 272, 360, 491, 812
TspRI	CASTG	2 cut(s)	664, 760
XapI	RAATTY	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.