Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

80430392 .. 80430784

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCTGCCGGGGGCCCACACCGTCTCGGCGGCCATGAGAGGAGGACCTCCTCCTTTTTCTCTCAAGCTTATAATCCCTTCCAATATAATAACCCCCCTCAAAACAACAAGAATCAACCGCCACCGACCACCACCGACCTTGTGCCTCGGCAACTCCATGGGCGACGAAGGCGGCGCTTCAACGACGGAGACTCGACCAATTGAGGCGCCGACGAGGACAAAAGAAGACGAAGAGCCGGAAAAATCCGTCAAGGAAGTCCCCCCGCCGCCGGAGAAGCCGGAGCCCGGCGATTGCTGCGGCAGTGGTTGCGTCCGATGCGTTTGGGACGTGTATTACGACGAGCTCGACGAATATAACAAGCTCTACAAAAGTGATTCCACCTCCGACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

130

Amino Acids

14.16

Weight (kDa)

5.04

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	86 - 122	4.5e-14	Oxidoreductase-like protein, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	205
AciI	CCGC	6 cut(s)	29, 118, 171, 263, 266, 297
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	268, 284
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	180
AjiI	CACGTC	1 cut(s)	328
AluBI	AGCT	3 cut(s)	67, 343, 361
AluI	AGCT	3 cut(s)	67, 343, 361
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	2 cut(s)	28, 182
AoxI	GGCC	2 cut(s)	12, 30
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	4, 294
AspLEI	GCGC	2 cut(s)	176, 208
AspS9I	GGNCC	3 cut(s)	12, 13, 44
AsuC2I	CCSGG	2 cut(s)	9, 285
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	3 cut(s)	16, 285, 345
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	281
BcnI	CCSGG	2 cut(s)	9, 285
BcoDI	GTCTC	2 cut(s)	28, 182
BfoI	RGCGCY	2 cut(s)	177, 209
BisI	GCNGC	6 cut(s)	5, 30, 172, 266, 295, 298
BlsI	GCNGC	6 cut(s)	6, 31, 173, 267, 296, 299
Bme1390I	CCNGG	2 cut(s)	9, 285
Bme18I	GGWCC	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	3 cut(s)	12, 13, 44
BmiI	GGNNCC	4 cut(s)	13, 14, 207, 282
BmrFI	CCNGG	2 cut(s)	9, 285
BmsI	GCATC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	9, 285
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	8, 145, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 284
BseDI	CCNNGG	3 cut(s)	8, 145, 156
BseLI	CCNNNNNNNGG	2 cut(s)	268, 284
BseRI	GAGGAG	2 cut(s)	39, 54
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	281
BshFI	GGCC	2 cut(s)	14, 32
BshNI	GGYRCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	5 cut(s)	8, 236, 269, 278, 285
BslFI	GGGAC	2 cut(s)	242, 338
BslI	CCNNNNNNNGG	2 cut(s)	268, 284
BsmAI	GTCTC	2 cut(s)	28, 182
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	242, 338
BsnI	GGCC	2 cut(s)	14, 32
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	16, 285, 345
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	6 cut(s)	29, 118, 171, 263, 266, 297
BspANI	GGCC	2 cut(s)	14, 32
BspLI	GGNNCC	4 cut(s)	13, 14, 207, 282
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	205
BssECI	CCNNGG	3 cut(s)	8, 145, 156
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	177, 209
BstHHI	GCGC	2 cut(s)	176, 208
BstMAI	GTCTC	2 cut(s)	28, 182
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 274, 294, 306, 315
BstSCI	CCNGG	2 cut(s)	7, 283
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	14, 32
BtgI	CCRYGG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
CfoI	GCGC	2 cut(s)	176, 208
Cfr13I	GGNCC	3 cut(s)	12, 13, 44
CseI	GACGC	1 cut(s)	298
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	2 cut(s)	34, 157
CviJI	RGCY	8 cut(s)	14, 32, 67, 235, 277, 283, 343, 361
CviKI_1	RGCY	8 cut(s)	14, 32, 67, 235, 277, 283, 343, 361
DdeI	CTNAG	1 cut(s)	390
DinI	GGCGCC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	3 cut(s)	16, 285, 345
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	2 cut(s)	12, 44
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	3 cut(s)	16, 285, 345
EgeI	GGCGCC	1 cut(s)	207
EheI	GGCGCC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	37, 160
FaiI	YATR	5 cut(s)	35, 71, 86, 158, 354
FaqI	GGGAC	2 cut(s)	242, 338
FatI	CATG	2 cut(s)	33, 156
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	6 cut(s)	5, 30, 172, 266, 295, 298
FriOI	GRGCYC	3 cut(s)	16, 285, 345
Fsp4HI	GCNGC	6 cut(s)	5, 30, 172, 266, 295, 298
GlaI	GCGC	2 cut(s)	175, 207
GluI	GCNGC	6 cut(s)	5, 30, 172, 266, 295, 298
HaeII	RGCGCY	2 cut(s)	177, 209
HaeIII	GGCC	2 cut(s)	14, 32
HapII	CCGG	5 cut(s)	8, 236, 269, 278, 285
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	2 cut(s)	176, 208
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	37, 160
Hin6I	GCGC	2 cut(s)	174, 206
HinP1I	GCGC	2 cut(s)	174, 206
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	4 cut(s)	111, 190, 374, 386
HpaII	CCGG	5 cut(s)	8, 236, 269, 278, 285
Hpy188I	TCNGA	2 cut(s)	314, 385
Hpy99I	CGWCG	5 cut(s)	167, 187, 214, 341, 350
HpyAV	CCTTC	2 cut(s)	87, 161
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 274, 294, 306, 315
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	37, 160
HspAI	GCGC	2 cut(s)	174, 206
KasI	GGCGCC	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	21, 249, 282, 291, 298
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	1 cut(s)	305
MaeII	ACGT	1 cut(s)	327
MboII	GAAGA	2 cut(s)	236, 242
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	16, 285, 345
MluCI	AATT	1 cut(s)	198
Mly113I	GGCGCC	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	184, 380
MnlI	CCTC	9 cut(s)	32, 35, 57, 60, 107, 155, 196, 207, 391
MspI	CCGG	5 cut(s)	8, 236, 269, 278, 285
MspR9I	CCNGG	2 cut(s)	9, 285
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	5 cut(s)	168, 274, 294, 306, 315
NarI	GGCGCC	1 cut(s)	206
NciI	CCSGG	2 cut(s)	9, 285
NcoI	CCATGG	1 cut(s)	156
NlaIII	CATG	2 cut(s)	37, 160
NlaIV	GGNNCC	4 cut(s)	13, 14, 207, 282
NmeAIII	GCCGAG	2 cut(s)	5, 126
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	3 cut(s)	333, 342, 345
PfeI	GAWTC	2 cut(s)	111, 374
PkrI	GCNGC	6 cut(s)	6, 31, 173, 267, 296, 299
PleI	GAGTC	2 cut(s)	184, 380
PluTI	GGCGCC	1 cut(s)	209
PpsI	GAGTC	2 cut(s)	184, 380
PpuMI	RGGWCCY	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	4 cut(s)	13, 14, 207, 282
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	12, 13, 44
PspPPI	RGGWCCY	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	225
SatI	GCNGC	6 cut(s)	5, 30, 172, 266, 295, 298
Sau96I	GGNCC	3 cut(s)	12, 13, 44
SchI	GAGTC	2 cut(s)	184, 380
ScrFI	CCNGG	2 cut(s)	9, 285
SduI	GDGCHC	3 cut(s)	16, 285, 345
SetI	ASST	7 cut(s)	49, 69, 140, 330, 345, 363, 383
SfaNI	GCATC	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	6 cut(s)	29, 118, 171, 263, 266, 297
SspDI	GGCGCC	1 cut(s)	205
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	7, 283
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	193, 345
TasI	AATT	1 cut(s)	198
TauI	GCSGC	4 cut(s)	32, 174, 268, 300
TfiI	GAWTC	2 cut(s)	111, 374
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	4, 294
TspGWI	ACGGA	2 cut(s)	200, 235
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.