Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

11974879 .. 11975262

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG139900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGCCCGGGGCCCACACCGTCTCGGCGGCCATGAGAGGAGGACCTCCTCCTTTTTCTCTCAAGCTAATCCCTTCCAATATAATAACCCCCCTCAAAAGAACAAGAATCAACCGCCACCGACCACCAACCTTGTGCCTCGGCAACTCCATGGGCGACCAAGGCGCCGCTTCAACGACGGAGACTCGACCAATTGAGGCGCCGACGAGGAAAAAAGAAGACGAAGAGCCGGAAAAGGAAGTCCCGCCACCGCCGGAGAAGCCGGAGCCCGGCGATTGCTGCGGCAGCGGTTGCGTCCGATGCGTTTGGGACCTGTATTACGACGAGCTCGACGAATATAACAAGCTCTACAAAAGTGATTCCACCTCCAACTCCAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

127

Amino Acids

13.96

Weight (kDa)

5.7

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	81 - 117	2e-14	Oxidoreductase-like protein, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 199
AciI	CCGC	7 cut(s)	29, 115, 168, 245, 251, 282, 288
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	165, 200
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	174
AluBI	AGCT	3 cut(s)	67, 328, 346
AluI	AGCT	3 cut(s)	67, 328, 346
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	28, 176
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	12, 30
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	4, 279, 285
AspLEI	GCGC	2 cut(s)	167, 202
AspS9I	GGNCC	4 cut(s)	12, 13, 44, 310
AsuC2I	CCSGG	3 cut(s)	9, 10, 270
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	44, 310
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	2 cut(s)	164, 199
BanII	GRGCYC	3 cut(s)	16, 270, 330
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	16, 266, 297
BcnI	CCSGG	3 cut(s)	9, 10, 270
BcoDI	GTCTC	2 cut(s)	28, 176
BfoI	RGCGCY	2 cut(s)	168, 203
BisI	GCNGC	6 cut(s)	5, 30, 168, 280, 283, 286
BlsI	GCNGC	6 cut(s)	6, 31, 169, 281, 284, 287
Bme1390I	CCNGG	3 cut(s)	9, 10, 270
Bme18I	GGWCC	2 cut(s)	44, 310
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	4 cut(s)	12, 13, 44, 310
BmiI	GGNNCC	6 cut(s)	13, 14, 166, 201, 267, 311
BmrFI	CCNGG	3 cut(s)	9, 10, 270
BmsI	GCATC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	9, 10, 270
BsaHI	GRCGYC	2 cut(s)	165, 200
BsaJI	CCNNGG	5 cut(s)	8, 9, 139, 150, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseDI	CCNNGG	5 cut(s)	8, 9, 139, 150, 160
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	39, 54
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	16, 266, 297
BshFI	GGCC	2 cut(s)	14, 32
BshNI	GGYRCC	2 cut(s)	164, 199
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	9, 230, 254, 263, 270
BslFI	GGGAC	2 cut(s)	227, 323
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	28, 176
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	227, 323
BsnI	GGCC	2 cut(s)	14, 32
BsoBI	CYCGRG	1 cut(s)	8
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	16, 270, 330
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	7 cut(s)	29, 115, 168, 245, 251, 282, 288
BspANI	GGCC	2 cut(s)	14, 32
BspLI	GGNNCC	6 cut(s)	13, 14, 166, 201, 267, 311
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	2 cut(s)	164, 199
BssECI	CCNNGG	5 cut(s)	8, 9, 139, 150, 160
BssNI	GRCGYC	2 cut(s)	165, 200
BssT1I	CCWWGG	2 cut(s)	150, 160
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	2 cut(s)	165, 200
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	381
BstDSI	CCRYGG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	168, 203
BstHHI	GCGC	2 cut(s)	167, 202
BstMAI	GTCTC	2 cut(s)	28, 176
BstMWI	GCNNNNNNNGC	6 cut(s)	162, 259, 279, 285, 291, 300
BstSCI	CCNGG	3 cut(s)	7, 8, 268
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	16, 266, 297
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	14, 32
BtgI	CCRYGG	1 cut(s)	150
CfoI	GCGC	2 cut(s)	167, 202
Cfr13I	GGNCC	4 cut(s)	12, 13, 44, 310
Cfr9I	CCCGGG	1 cut(s)	8
CseI	GACGC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	2 cut(s)	34, 151
CviJI	RGCY	9 cut(s)	7, 14, 32, 67, 229, 262, 268, 328, 346
CviKI_1	RGCY	9 cut(s)	7, 14, 32, 67, 229, 262, 268, 328, 346
DdeI	CTNAG	1 cut(s)	381
DinI	GGCGCC	2 cut(s)	166, 201
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	150, 160
Eco24I	GRGCYC	3 cut(s)	16, 270, 330
Eco47I	GGWCC	2 cut(s)	44, 310
Eco53kI	GAGCTC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	3 cut(s)	12, 44, 310
EcoT14I	CCWWGG	2 cut(s)	150, 160
EcoT38I	GRGCYC	3 cut(s)	16, 270, 330
EgeI	GGCGCC	2 cut(s)	166, 201
EheI	GGCGCC	2 cut(s)	166, 201
ErhI	CCWWGG	2 cut(s)	150, 160
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	37, 154
FaiI	YATR	4 cut(s)	35, 83, 152, 339
FaqI	GGGAC	2 cut(s)	227, 323
FatI	CATG	2 cut(s)	33, 150
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	6 cut(s)	5, 30, 168, 280, 283, 286
FriOI	GRGCYC	3 cut(s)	16, 270, 330
Fsp4HI	GCNGC	6 cut(s)	5, 30, 168, 280, 283, 286
GlaI	GCGC	2 cut(s)	166, 201
GluI	GCNGC	6 cut(s)	5, 30, 168, 280, 283, 286
HaeII	RGCGCY	2 cut(s)	168, 203
HaeIII	GGCC	2 cut(s)	14, 32
HapII	CCGG	5 cut(s)	9, 230, 254, 263, 270
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	167, 202
Hin1I	GRCGYC	2 cut(s)	165, 200
Hin1II	CATG	2 cut(s)	37, 154
Hin6I	GCGC	2 cut(s)	165, 200
HinP1I	GCGC	2 cut(s)	165, 200
HinfI	GANTC	3 cut(s)	108, 184, 359
HpaII	CCGG	5 cut(s)	9, 230, 254, 263, 270
Hpy188I	TCNGA	1 cut(s)	299
Hpy99I	CGWCG	4 cut(s)	181, 208, 326, 335
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	6 cut(s)	162, 259, 279, 285, 291, 300
HpyF3I	CTNAG	1 cut(s)	381
Hsp92I	GRCGYC	2 cut(s)	165, 200
Hsp92II	CATG	2 cut(s)	37, 154
HspAI	GCGC	2 cut(s)	165, 200
KasI	GGCGCC	2 cut(s)	164, 199
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	22, 243, 267, 276, 283, 326
Lsp1109I	GCAGC	3 cut(s)	16, 266, 297
LweI	GCATC	1 cut(s)	290
MboII	GAAGA	2 cut(s)	230, 236
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	16, 270, 330
MluCI	AATT	1 cut(s)	192
Mly113I	GGCGCC	2 cut(s)	165, 200
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	9 cut(s)	32, 35, 57, 60, 104, 149, 190, 201, 376
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	5 cut(s)	9, 230, 254, 263, 270
MspR9I	CCNGG	3 cut(s)	9, 10, 270
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	6 cut(s)	162, 259, 279, 285, 291, 300
NarI	GGCGCC	2 cut(s)	165, 200
NciI	CCSGG	3 cut(s)	9, 10, 270
NcoI	CCATGG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	37, 154
NlaIV	GGNNCC	6 cut(s)	13, 14, 166, 201, 267, 311
NmeAIII	GCCGAG	2 cut(s)	5, 120
PciSI	GCTCTTC	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 330
PfeI	GAWTC	2 cut(s)	108, 359
PkrI	GCNGC	6 cut(s)	6, 31, 169, 281, 284, 287
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	2 cut(s)	168, 203
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	2 cut(s)	44, 310
Psp124BI	GAGCTC	1 cut(s)	330
Psp5II	RGGWCCY	2 cut(s)	44, 310
PspN4I	GGNNCC	6 cut(s)	13, 14, 166, 201, 267, 311
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	4 cut(s)	12, 13, 44, 310
PspPPI	RGGWCCY	2 cut(s)	44, 310
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	219
SatI	GCNGC	6 cut(s)	5, 30, 168, 280, 283, 286
Sau96I	GGNCC	4 cut(s)	12, 13, 44, 310
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	9, 10, 270
SduI	GDGCHC	3 cut(s)	16, 270, 330
SetI	ASST	7 cut(s)	49, 69, 134, 315, 330, 348, 368
SfaNI	GCATC	1 cut(s)	290
SfoI	GGCGCC	2 cut(s)	166, 201
SinI	GGWCC	2 cut(s)	44, 310
SmaI	CCCGGG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	7 cut(s)	29, 115, 168, 245, 251, 282, 288
SspDI	GGCGCC	2 cut(s)	164, 199
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	7, 8, 268
StyI	CCWWGG	2 cut(s)	150, 160
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	187, 330
TasI	AATT	1 cut(s)	192
TauI	GCSGC	3 cut(s)	32, 170, 285
TfiI	GAWTC	2 cut(s)	108, 359
TseI	GCWGC	3 cut(s)	4, 279, 285
TspGWI	ACGGA	1 cut(s)	194
TspMI	CCCGGG	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	44, 310
XmaI	CCCGGG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.