Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

12538551 .. 12538943

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCAGCCCGGGGCCCACACCGTCTCGGCGGCCATGAGAGGAGGACCTCCTCCTTTTTCTCTCAAGCTAATCCCTTCCAATATAATAACCCCCCTCAAAAGAACAAGAATCAACCGCCACCGACCACCAACCTTGTGCCTCGGCAACTCCATGGGCGACCAAGGCGGCGCCTCAACGACGGAGACTCGACCAATTGAGGCGCCGACGAGGAAAAAAGAAGACGGAGAGCCGGAAAAGGAAGTCCCGCCGCCGCCGCCTCCGCCTGAGAAGCCGGAGCCCGGCGATTGCTGCGGCAGCGGTTGCGTCCGATGCGTTTGGGACGTGTATTACGACGAGCTCGACGAATATAACAAGCTCTACAAAAGTGATTCCACCTCCACCTCCACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

130

Amino Acids

14.12

Weight (kDa)

6.11

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	85 - 120	3.6e-10	Oxidoreductase-like protein, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 199
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	168, 200
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	321
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	3 cut(s)	67, 337, 355
AluI	AGCT	3 cut(s)	67, 337, 355
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	2 cut(s)	28, 176
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	12, 30
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	4, 288, 294
AspLEI	GCGC	2 cut(s)	170, 202
AspS9I	GGNCC	3 cut(s)	12, 13, 44
AsuC2I	CCSGG	3 cut(s)	9, 10, 279
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	2 cut(s)	167, 199
BanII	GRGCYC	3 cut(s)	16, 279, 339
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	16, 275, 306
BcnI	CCSGG	3 cut(s)	9, 10, 279
BcoDI	GTCTC	2 cut(s)	28, 176
BfoI	RGCGCY	2 cut(s)	171, 203
BisI	GCNGC	9 cut(s)	5, 30, 166, 248, 251, 254, 289, 292, 295
BlsI	GCNGC	9 cut(s)	6, 31, 167, 249, 252, 255, 290, 293, 296
Bme1390I	CCNGG	3 cut(s)	9, 10, 279
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	12, 13, 44
BmiI	GGNNCC	5 cut(s)	13, 14, 169, 201, 276
BmrFI	CCNGG	3 cut(s)	9, 10, 279
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	9, 10, 279
BsaHI	GRCGYC	2 cut(s)	168, 200
BsaJI	CCNNGG	5 cut(s)	8, 9, 139, 150, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseDI	CCNNGG	5 cut(s)	8, 9, 139, 150, 160
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	39, 54
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	16, 275, 306
BshFI	GGCC	2 cut(s)	14, 32
BshNI	GGYRCC	2 cut(s)	167, 199
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	9, 230, 272, 279
BslFI	GGGAC	2 cut(s)	227, 332
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	28, 176
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	227, 332
BsnI	GGCC	2 cut(s)	14, 32
BsoBI	CYCGRG	1 cut(s)	8
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	16, 279, 339
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	14, 32
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	5 cut(s)	13, 14, 169, 201, 276
BspT107I	GGYRCC	2 cut(s)	167, 199
BssECI	CCNNGG	5 cut(s)	8, 9, 139, 150, 160
BssNI	GRCGYC	2 cut(s)	168, 200
BssT1I	CCWWGG	2 cut(s)	150, 160
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	2 cut(s)	168, 200
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	264, 390
BstDSI	CCRYGG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	171, 203
BstHHI	GCGC	2 cut(s)	170, 202
BstMAI	GTCTC	2 cut(s)	28, 176
BstMWI	GCNNNNNNNGC	8 cut(s)	162, 253, 259, 268, 288, 294, 300, 309
BstSCI	CCNGG	3 cut(s)	7, 8, 277
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	16, 275, 306
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	14, 32
BtgI	CCRYGG	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	170, 202
Cfr13I	GGNCC	3 cut(s)	12, 13, 44
Cfr9I	CCCGGG	1 cut(s)	8
CseI	GACGC	1 cut(s)	292
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	2 cut(s)	34, 151
CviJI	RGCY	9 cut(s)	7, 14, 32, 67, 229, 271, 277, 337, 355
CviKI_1	RGCY	9 cut(s)	7, 14, 32, 67, 229, 271, 277, 337, 355
DdeI	CTNAG	2 cut(s)	264, 390
DinI	GGCGCC	2 cut(s)	169, 201
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	150, 160
Eco24I	GRGCYC	3 cut(s)	16, 279, 339
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	12, 44
EcoT14I	CCWWGG	2 cut(s)	150, 160
EcoT38I	GRGCYC	3 cut(s)	16, 279, 339
EgeI	GGCGCC	2 cut(s)	169, 201
EheI	GGCGCC	2 cut(s)	169, 201
ErhI	CCWWGG	2 cut(s)	150, 160
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	37, 154
FaiI	YATR	4 cut(s)	35, 83, 152, 348
FaqI	GGGAC	2 cut(s)	227, 332
FatI	CATG	2 cut(s)	33, 150
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	9 cut(s)	5, 30, 166, 248, 251, 254, 289, 292, 295
FriOI	GRGCYC	3 cut(s)	16, 279, 339
Fsp4HI	GCNGC	9 cut(s)	5, 30, 166, 248, 251, 254, 289, 292, 295
GlaI	GCGC	2 cut(s)	169, 201
GluI	GCNGC	9 cut(s)	5, 30, 166, 248, 251, 254, 289, 292, 295
HaeII	RGCGCY	2 cut(s)	171, 203
HaeIII	GGCC	2 cut(s)	14, 32
HapII	CCGG	4 cut(s)	9, 230, 272, 279
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	2 cut(s)	170, 202
Hin1I	GRCGYC	2 cut(s)	168, 200
Hin1II	CATG	2 cut(s)	37, 154
Hin6I	GCGC	2 cut(s)	168, 200
HinP1I	GCGC	2 cut(s)	168, 200
HinfI	GANTC	3 cut(s)	108, 184, 368
HpaII	CCGG	4 cut(s)	9, 230, 272, 279
Hpy188I	TCNGA	1 cut(s)	308
Hpy99I	CGWCG	4 cut(s)	181, 208, 335, 344
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	8 cut(s)	162, 253, 259, 268, 288, 294, 300, 309
HpyF3I	CTNAG	2 cut(s)	264, 390
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	2 cut(s)	168, 200
Hsp92II	CATG	2 cut(s)	37, 154
HspAI	GCGC	2 cut(s)	168, 200
KasI	GGCGCC	2 cut(s)	167, 199
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	5 cut(s)	22, 243, 276, 285, 292
Lsp1109I	GCAGC	3 cut(s)	16, 275, 306
LweI	GCATC	1 cut(s)	299
MaeII	ACGT	1 cut(s)	321
MboII	GAAGA	1 cut(s)	230
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	16, 279, 339
MluCI	AATT	1 cut(s)	192
Mly113I	GGCGCC	2 cut(s)	168, 200
MlyI	GAGTC	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	4 cut(s)	9, 230, 272, 279
MspR9I	CCNGG	3 cut(s)	9, 10, 279
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	8 cut(s)	162, 253, 259, 268, 288, 294, 300, 309
NarI	GGCGCC	2 cut(s)	168, 200
NciI	CCSGG	3 cut(s)	9, 10, 279
NcoI	CCATGG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	37, 154
NlaIV	GGNNCC	5 cut(s)	13, 14, 169, 201, 276
NmeAIII	GCCGAG	2 cut(s)	5, 120
PcsI	WCGNNNNNNNCGW	3 cut(s)	327, 336, 339
PfeI	GAWTC	2 cut(s)	108, 368
PkrI	GCNGC	9 cut(s)	6, 31, 167, 249, 252, 255, 290, 293, 296
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	2 cut(s)	171, 203
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	5 cut(s)	13, 14, 169, 201, 276
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	12, 13, 44
PspPPI	RGGWCCY	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	339
SatI	GCNGC	9 cut(s)	5, 30, 166, 248, 251, 254, 289, 292, 295
Sau96I	GGNCC	3 cut(s)	12, 13, 44
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	9, 10, 279
SduI	GDGCHC	3 cut(s)	16, 279, 339
SetI	ASST	9 cut(s)	49, 69, 134, 324, 339, 357, 377, 383, 389
SfaNI	GCATC	1 cut(s)	299
SfoI	GGCGCC	2 cut(s)	169, 201
SinI	GGWCC	1 cut(s)	44
SmaI	CCCGGG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	192
SspDI	GGCGCC	2 cut(s)	167, 199
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	7, 8, 277
StyI	CCWWGG	2 cut(s)	150, 160
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	187, 339
TasI	AATT	1 cut(s)	192
TauI	GCSGC	6 cut(s)	32, 168, 250, 253, 256, 294
TfiI	GAWTC	2 cut(s)	108, 368
TseI	GCWGC	3 cut(s)	4, 288, 294
TspGWI	ACGGA	2 cut(s)	194, 237
TspMI	CCCGGG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.