Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003340.1

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

21612 .. 21977

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003340.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgcagcccggggcccacaccgtctcggcggccatgagaggaggacctcctcctttttctctcaagctaatcccttccaatattataacccccctcaaaagaacaagaatcaaccgccaccgaccaccaaccttgtgtctccgcaactccatgggcgacgaaggcggcgcttcaaagacggagactcgaccaattgaggcgccgacgaggaaaaaagaagaccaagagccggaaaaggaagtgccgcctccgccgccgccggagaagccggagcccggcgattgctgcggcagcggttgcgtccgatgcgtttgggacgtgtattacgacgagctcgacgaatataacaagctctacaaaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

121

Amino Acids

13.47

Weight (kDa)

7.61

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	229, 275
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	319
AluBI	AGCT	3 cut(s)	67, 334, 352
AluI	AGCT	3 cut(s)	67, 334, 352
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	3 cut(s)	28, 143, 176
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	12, 30
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	4, 285, 291
AspLEI	GCGC	2 cut(s)	170, 202
AspS9I	GGNCC	3 cut(s)	12, 13, 44
AsuC2I	CCSGG	3 cut(s)	9, 10, 276
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	3 cut(s)	16, 276, 336
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	3 cut(s)	16, 272, 303
BcnI	CCSGG	3 cut(s)	9, 10, 276
BcoDI	GTCTC	3 cut(s)	28, 143, 176
BfoI	RGCGCY	2 cut(s)	171, 203
BisI	GCNGC	9 cut(s)	5, 30, 166, 245, 254, 257, 286, 289, 292
BlsI	GCNGC	9 cut(s)	6, 31, 167, 246, 255, 258, 287, 290, 293
Bme1390I	CCNGG	3 cut(s)	9, 10, 276
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	3 cut(s)	12, 13, 44
BmiI	GGNNCC	4 cut(s)	13, 14, 201, 273
BmrFI	CCNGG	3 cut(s)	9, 10, 276
BmsI	GCATC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	9, 10, 276
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	8, 9, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 275
BseDI	CCNNGG	3 cut(s)	8, 9, 150
BseLI	CCNNNNNNNGG	2 cut(s)	229, 275
BseRI	GAGGAG	2 cut(s)	39, 54
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	16, 272, 303
BshFI	GGCC	2 cut(s)	14, 32
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	9, 230, 260, 269, 276
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	229, 275
BsmAI	GTCTC	3 cut(s)	28, 143, 176
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	14, 32
BsoBI	CYCGRG	1 cut(s)	8
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	16, 276, 336
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	14, 32
BspLI	GGNNCC	4 cut(s)	13, 14, 201, 273
BspT107I	GGYRCC	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	8, 9, 150
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	171, 203
BstHHI	GCGC	2 cut(s)	170, 202
BstMAI	GTCTC	3 cut(s)	28, 143, 176
BstMWI	GCNNNNNNNGC	8 cut(s)	162, 250, 253, 265, 285, 291, 297, 306
BstSCI	CCNGG	3 cut(s)	7, 8, 274
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	16, 272, 303
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	14, 32
BtgI	CCRYGG	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	319
CfoI	GCGC	2 cut(s)	170, 202
Cfr13I	GGNCC	3 cut(s)	12, 13, 44
Cfr9I	CCCGGG	1 cut(s)	8
CseI	GACGC	1 cut(s)	289
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	2 cut(s)	34, 151
CviJI	RGCY	9 cut(s)	7, 14, 32, 67, 229, 268, 274, 334, 352
CviKI_1	RGCY	9 cut(s)	7, 14, 32, 67, 229, 268, 274, 334, 352
DinI	GGCGCC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	3 cut(s)	16, 276, 336
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	2 cut(s)	12, 44
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	3 cut(s)	16, 276, 336
EgeI	GGCGCC	1 cut(s)	201
EheI	GGCGCC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	37, 154
FaiI	YATR	4 cut(s)	35, 86, 152, 345
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	2 cut(s)	33, 150
Fnu4HI	GCNGC	9 cut(s)	5, 30, 166, 245, 254, 257, 286, 289, 292
FriOI	GRGCYC	3 cut(s)	16, 276, 336
Fsp4HI	GCNGC	9 cut(s)	5, 30, 166, 245, 254, 257, 286, 289, 292
GlaI	GCGC	2 cut(s)	169, 201
GluI	GCNGC	9 cut(s)	5, 30, 166, 245, 254, 257, 286, 289, 292
HaeII	RGCGCY	2 cut(s)	171, 203
HaeIII	GGCC	2 cut(s)	14, 32
HapII	CCGG	5 cut(s)	9, 230, 260, 269, 276
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	2 cut(s)	170, 202
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	37, 154
Hin6I	GCGC	2 cut(s)	168, 200
HinP1I	GCGC	2 cut(s)	168, 200
HinfI	GANTC	2 cut(s)	108, 184
HpaII	CCGG	5 cut(s)	9, 230, 260, 269, 276
Hpy188I	TCNGA	1 cut(s)	305
Hpy99I	CGWCG	4 cut(s)	161, 208, 332, 341
HpyAV	CCTTC	2 cut(s)	84, 155
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	318, 362
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	8 cut(s)	162, 250, 253, 265, 285, 291, 297, 306
HpySE526I	ACGT	2 cut(s)	318, 362
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	37, 154
HspAI	GCGC	2 cut(s)	168, 200
KasI	GGCGCC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	22, 243, 273, 282, 289
Lsp1109I	GCAGC	3 cut(s)	16, 272, 303
LweI	GCATC	1 cut(s)	296
MaeII	ACGT	2 cut(s)	318, 362
MboII	GAAGA	1 cut(s)	230
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	16, 276, 336
MluCI	AATT	1 cut(s)	192
Mly113I	GGCGCC	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	8 cut(s)	32, 35, 57, 60, 104, 190, 201, 258
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	5 cut(s)	9, 230, 260, 269, 276
MspR9I	CCNGG	3 cut(s)	9, 10, 276
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	8 cut(s)	162, 250, 253, 265, 285, 291, 297, 306
NarI	GGCGCC	1 cut(s)	200
NciI	CCSGG	3 cut(s)	9, 10, 276
NcoI	CCATGG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	37, 154
NlaIV	GGNNCC	4 cut(s)	13, 14, 201, 273
NmeAIII	GCCGAG	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 333, 336
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	9 cut(s)	6, 31, 167, 246, 255, 258, 287, 290, 293
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	4 cut(s)	13, 14, 201, 273
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	12, 13, 44
PspPPI	RGGWCCY	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	336
SatI	GCNGC	9 cut(s)	5, 30, 166, 245, 254, 257, 286, 289, 292
Sau96I	GGNCC	3 cut(s)	12, 13, 44
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	9, 10, 276
SduI	GDGCHC	3 cut(s)	16, 276, 336
SetI	ASST	7 cut(s)	49, 69, 134, 321, 336, 354, 365
SfaNI	GCATC	1 cut(s)	296
SfoI	GGCGCC	1 cut(s)	201
SinI	GGWCC	1 cut(s)	44
SmaI	CCCGGG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	192
SspDI	GGCGCC	1 cut(s)	199
SspI	AATATT	1 cut(s)	82
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	7, 8, 274
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	321, 365
TaqI	TCGA	2 cut(s)	187, 336
TasI	AATT	1 cut(s)	192
TauI	GCSGC	6 cut(s)	32, 168, 247, 256, 259, 291
TfiI	GAWTC	1 cut(s)	108
TseI	GCWGC	3 cut(s)	4, 285, 291
TspGWI	ACGGA	1 cut(s)	194
TspMI	CCCGGG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.