Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

11630311 .. 11631772

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016954

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCAAGAAGATTTGGAGATGAGAGATGGTGGGTGGAAGAAAGTGATGGGTAGTGAGGAATGGGTTAGATCAAATTTGGGGAAAAAGTTTAGAAAGAAAATTGGGGCAAGATGGAAGGAGAAGGGAGGGAGGCCGAAAGAGAAAAAAAGAGAAGAAAAAAGAGGCAGAAGCCCCAGATCTGAGACAGAGCTCAGGGAGCCTTGTATGGCTCATCGTCATTGCCTGCGATGCATCACATCCAATCATTACCCCACCTTCAAAGTTCAAACAATGCTGCCCGGGGCCCACACTGTCTCGGCGGCCATGAGAGGAGGACCTCCTCCTTTTTCTCTCAAGCTAATCCCTTCCAATATAATAACCCCCCTCAAAAGAACAAGAATCAACCGCCACCGACCGCGAACCTTGTGCCTCGGCAACTCCATGGGCGACGAAGGCGGCGCTTCAACGGCGGAGGCTCGACCAATTGAGGCGCCGACGAGGAAAAAAGAAGACGGAGAGCCGGAAAAATCCGTCAAGGAAGTCCCGCCGCCGGAGAAGCCGGAGCCCGGTGATTGCTGCGGCAGCGGTTGCGTCCGATGTGTTTGGGACGTGTATTACGACGAGCTCGACGAATATAACAAGCTCTACAAAAGTGATTCCACCTCCAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

218

Amino Acids

24.6

Weight (kDa)

9.39

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	177 - 208	8.8e-13	Oxidoreductase-like protein, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	469
AccII	CGCG	1 cut(s)	397
AciI	CCGC	9 cut(s)	299, 385, 395, 435, 449, 524, 527, 558, 564
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	529, 545
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	3 cut(s)	259, 266, 444
AjiI	CACGTC	1 cut(s)	589
AluBI	AGCT	4 cut(s)	190, 337, 604, 622
AluI	AGCT	4 cut(s)	190, 337, 604, 622
Alw21I	GWGCWC	2 cut(s)	192, 606
Alw26I	GTCTC	2 cut(s)	176, 298
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	131, 282, 300
ApaI	GGGCCC	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	274, 555, 561
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	440, 472
AspS9I	GGNCC	3 cut(s)	282, 283, 314
AsuC2I	CCSGG	3 cut(s)	279, 280, 546
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	4 cut(s)	192, 286, 546, 606
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	192, 606
BbvI	GCAGC	3 cut(s)	261, 542, 573
BccI	CCATC	3 cut(s)	20, 40, 105
BceAI	ACGGC	1 cut(s)	462
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BcnI	CCSGG	3 cut(s)	279, 280, 546
BcoDI	GTCTC	2 cut(s)	176, 298
BfoI	RGCGCY	2 cut(s)	441, 473
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	7 cut(s)	275, 300, 436, 527, 556, 559, 562
BlsI	GCNGC	7 cut(s)	276, 301, 437, 528, 557, 560, 563
Bme1390I	CCNGG	3 cut(s)	279, 280, 546
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	589
BmgT120I	GGNCC	3 cut(s)	282, 283, 314
BmiI	GGNNCC	5 cut(s)	198, 283, 284, 471, 543
BmrFI	CCNGG	3 cut(s)	279, 280, 546
BmsI	GCATC	2 cut(s)	218, 240
BpiI	GAAGAC	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	279, 280, 546
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	4 cut(s)	278, 279, 409, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 545
Bse3DI	GCAATG	1 cut(s)	217
BseDI	CCNNGG	4 cut(s)	278, 279, 409, 420
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	529, 545
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	171, 205
BseRI	GAGGAG	2 cut(s)	309, 324
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	261, 542, 573
Bsh1236I	CGCG	1 cut(s)	397
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	133, 284, 302
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	192, 606
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	279, 500, 530, 539, 546
BslFI	GGGAC	2 cut(s)	506, 599
BslI	CCNNNNNNNGG	2 cut(s)	529, 545
BsmAI	GTCTC	2 cut(s)	176, 298
BsmFI	GGGAC	2 cut(s)	506, 599
BsnI	GGCC	3 cut(s)	133, 284, 302
BsoBI	CYCGRG	1 cut(s)	278
Bsp120I	GGGCCC	1 cut(s)	282
Bsp1286I	GDGCHC	4 cut(s)	192, 286, 546, 606
Bsp143I	GATC	2 cut(s)	68, 176
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	9 cut(s)	299, 385, 395, 435, 449, 524, 527, 558, 564
BspANI	GGCC	3 cut(s)	133, 284, 302
BspCNI	CTCAG	2 cut(s)	172, 204
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	5 cut(s)	198, 283, 284, 471, 543
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	217
BssECI	CCNNGG	4 cut(s)	278, 279, 409, 420
BssMI	GATC	2 cut(s)	68, 176
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	180, 191, 651
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	397
BstH2I	RGCGCY	2 cut(s)	441, 473
BstHHI	GCGC	2 cut(s)	440, 472
BstKTI	GATC	2 cut(s)	71, 179
BstMAI	GTCTC	2 cut(s)	176, 298
BstMBI	GATC	2 cut(s)	68, 176
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	7 cut(s)	196, 228, 432, 446, 535, 561, 567
BstSCI	CCNGG	3 cut(s)	277, 278, 544
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	3 cut(s)	261, 542, 573
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	133, 284, 302
BtgI	CCRYGG	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	2 cut(s)	440, 472
Cfr13I	GGNCC	3 cut(s)	282, 283, 314
Cfr9I	CCCGGG	1 cut(s)	278
CseI	GACGC	1 cut(s)	559
CviAII	CATG	2 cut(s)	304, 421
DdeI	CTNAG	3 cut(s)	180, 191, 651
DinI	GGCGCC	1 cut(s)	471
DpnI	GATC	2 cut(s)	70, 178
DpnII	GATC	2 cut(s)	68, 176
EaeI	YGGCCR	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	2 cut(s)	190, 604
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	4 cut(s)	192, 286, 546, 606
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	2 cut(s)	190, 604
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	2 cut(s)	190, 604
EcoO109I	RGGNCCY	2 cut(s)	282, 314
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	233
EcoT38I	GRGCYC	4 cut(s)	192, 286, 546, 606
EgeI	GGCGCC	1 cut(s)	471
EheI	GGCGCC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	307, 424
FaiI	YATR	5 cut(s)	206, 305, 353, 422, 615
FaqI	GGGAC	2 cut(s)	506, 599
FatI	CATG	2 cut(s)	303, 420
FauI	CCCGC	1 cut(s)	531
Fnu4HI	GCNGC	7 cut(s)	275, 300, 436, 527, 556, 559, 562
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	4 cut(s)	192, 286, 546, 606
Fsp4HI	GCNGC	7 cut(s)	275, 300, 436, 527, 556, 559, 562
GlaI	GCGC	2 cut(s)	439, 471
GluI	GCNGC	7 cut(s)	275, 300, 436, 527, 556, 559, 562
HaeII	RGCGCY	2 cut(s)	441, 473
HaeIII	GGCC	3 cut(s)	133, 284, 302
HapII	CCGG	5 cut(s)	279, 500, 530, 539, 546
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	2 cut(s)	440, 472
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	307, 424
Hin6I	GCGC	2 cut(s)	438, 470
HinP1I	GCGC	2 cut(s)	438, 470
HinfI	GANTC	2 cut(s)	378, 635
HpaII	CCGG	5 cut(s)	279, 500, 530, 539, 546
HphI	GGTGA	1 cut(s)	560
Hpy188I	TCNGA	2 cut(s)	181, 575
Hpy99I	CGWCG	4 cut(s)	431, 478, 602, 611
HpyAV	CCTTC	5 cut(s)	109, 115, 265, 354, 425
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	2 cut(s)	4, 231
HpyF10VI	GCNNNNNNNGC	7 cut(s)	196, 228, 432, 446, 535, 561, 567
HpyF3I	CTNAG	3 cut(s)	180, 191, 651
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	307, 424
HspAI	GCGC	2 cut(s)	438, 470
KasI	GGCGCC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	68, 176
LmnI	GCTCC	2 cut(s)	196, 541
LpnPI	CCDG	8 cut(s)	178, 187, 236, 292, 513, 543, 552, 559
Lsp1109I	GCAGC	3 cut(s)	261, 542, 573
LweI	GCATC	2 cut(s)	218, 240
MaeII	ACGT	1 cut(s)	588
MalI	GATC	2 cut(s)	70, 178
MboI	GATC	2 cut(s)	68, 176
MboII	GAAGA	4 cut(s)	20, 49, 164, 500
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	4 cut(s)	192, 286, 546, 606
MluCI	AATT	3 cut(s)	73, 99, 462
Mly113I	GGCGCC	1 cut(s)	470
Mph1103I	ATGCAT	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	5 cut(s)	279, 500, 530, 539, 546
MspR9I	CCNGG	3 cut(s)	279, 280, 546
MunI	CAATTG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	7 cut(s)	196, 228, 432, 446, 535, 561, 567
NarI	GGCGCC	1 cut(s)	470
NciI	CCSGG	3 cut(s)	279, 280, 546
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	68, 176
NlaIII	CATG	2 cut(s)	307, 424
NlaIV	GGNNCC	5 cut(s)	198, 283, 284, 471, 543
NmeAIII	GCCGAG	2 cut(s)	275, 390
NsiI	ATGCAT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	3 cut(s)	594, 603, 606
PfeI	GAWTC	2 cut(s)	378, 635
PkrI	GCNGC	7 cut(s)	276, 301, 437, 528, 557, 560, 563
PluTI	GGCGCC	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	314
Psp124BI	GAGCTC	2 cut(s)	192, 606
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	5 cut(s)	198, 283, 284, 471, 543
PspOMI	GGGCCC	1 cut(s)	282
PspPI	GGNCC	3 cut(s)	282, 283, 314
PspPPI	RGGWCCY	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	176
SacI	GAGCTC	2 cut(s)	192, 606
SatI	GCNGC	7 cut(s)	275, 300, 436, 527, 556, 559, 562
Sau3AI	GATC	2 cut(s)	68, 176
Sau96I	GGNCC	3 cut(s)	282, 283, 314
ScrFI	CCNGG	3 cut(s)	279, 280, 546
SduI	GDGCHC	4 cut(s)	192, 286, 546, 606
SetI	ASST	9 cut(s)	192, 257, 319, 339, 404, 591, 606, 624, 644
SfaNI	GCATC	2 cut(s)	218, 240
SfoI	GGCGCC	1 cut(s)	471
SinI	GGWCC	1 cut(s)	314
SmaI	CCCGGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	73, 99, 462
SsiI	CCGC	9 cut(s)	299, 385, 395, 435, 449, 524, 527, 558, 564
SspDI	GGCGCC	1 cut(s)	469
SstI	GAGCTC	2 cut(s)	192, 606
StyD4I	CCNGG	3 cut(s)	277, 278, 544
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	457, 606
TasI	AATT	3 cut(s)	73, 99, 462
TauI	GCSGC	4 cut(s)	302, 438, 529, 561
TfiI	GAWTC	2 cut(s)	378, 635
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	3 cut(s)	274, 555, 561
TspGWI	ACGGA	2 cut(s)	499, 507
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	73
XmaI	CCCGGG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.