Rroxscaffold_2G00142390

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007071
Physical Location & Seq
Forward (+)
80431025 .. 80432454
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142390.1

Sequence Viewer

Length: 381 bp
ATGGGGAGGTCGGAGTTTGTGATCGTCACGGTGGCGGCGGTTCTGCTGTTGTTGGGAAACGACGTCGTTGAGGCTTCGAGTTCTCCATCGGCGTTTGTGCAGAACGTCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCGTATTGCCCGTATTGCTTGCGTGCCAAGCGCATATTCAGTGAATTACATGAGCAACCTTATGTTGTAGAACTTGATCTTCGAGATGATGGGGGGCAAATTCAGAGTGTTATTCTGGATGTGGTAGGCCGATCCACTGTCCCACAAGTATTTGTGAATGGCAAGCACATCGGTGGTTCTGATGATCTCAAAGCCGCTGTTGCGAGTGGCCAACTTCAGAAGCTTCTTAGTATAAGTTGA

Protein Analysis

126

Amino Acids

13.6

Weight (kDa)

6.06

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 42 - 104 8.7e-17 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AciI CCGC 3 cut(s) 35, 38, 336
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 1 cut(s) 312
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 268, 349
ApoI RAATTY 1 cut(s) 240
AspLEI GCGC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 351
BccI CCATC 3 cut(s) 94, 137, 224
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BisI GCNGC 2 cut(s) 36, 336
BlsI GCNGC 2 cut(s) 37, 337
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 128
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 2 cut(s) 270, 351
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 270, 351
Bsp143I GATC 4 cut(s) 21, 217, 272, 325
BspACI CCGC 3 cut(s) 35, 38, 336
BspANI GGCC 2 cut(s) 270, 351
BspPI GGATC 1 cut(s) 267
BssMI GATC 4 cut(s) 21, 217, 272, 325
BssNI GRCGYC 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 31, 280
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 161, 165, 305
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 265
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 4 cut(s) 24, 220, 275, 328
BstMBI GATC 4 cut(s) 21, 217, 272, 325
BstMWI GCNNNNNNNGC 3 cut(s) 156, 169, 341
BsuRI GGCC 2 cut(s) 270, 351
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 187, 276
Cac8I GCNNGC 3 cut(s) 161, 165, 305
CfoI GCGC 1 cut(s) 174
CviAII CATG 1 cut(s) 191
CviJI RGCY 5 cut(s) 74, 270, 335, 351, 364
CviKI_1 RGCY 5 cut(s) 74, 270, 335, 351, 364
DdeI CTNAG 1 cut(s) 368
DpnI GATC 4 cut(s) 23, 219, 274, 327
DpnII GATC 4 cut(s) 21, 217, 272, 325
EaeI YGGCCR 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 341
FaeI CATG 1 cut(s) 194
FaiI YATR 4 cut(s) 176, 192, 204, 374
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 36, 336
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 36, 336
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 36, 336
HaeIII GGCC 2 cut(s) 270, 351
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 362
Hpy188I TCNGA 4 cut(s) 13, 246, 322, 360
Hpy188III TCNNGA 2 cut(s) 224, 257
Hpy99I CGWCG 2 cut(s) 65, 68
HpyCH4III ACNGT 2 cut(s) 31, 280
HpyCH4IV ACGT 2 cut(s) 63, 105
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 169, 341
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 2 cut(s) 63, 105
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 21, 217, 272, 325
LpnPI CCDG 1 cut(s) 242
MaeII ACGT 2 cut(s) 63, 105
MaeIII GTNAC 1 cut(s) 25
MalI GATC 4 cut(s) 23, 219, 274, 327
MboI GATC 4 cut(s) 21, 217, 272, 325
MboII GAAGA 2 cut(s) 124, 212
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 2 cut(s) 185, 240
MluNI TGGCCA 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 1 cut(s) 64
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 156, 169, 341
NdeII GATC 4 cut(s) 21, 217, 272, 325
NlaIII CATG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PkrI GCNGC 2 cut(s) 37, 337
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
RseI CAYNNNNRTG 1 cut(s) 312
SatI GCNGC 2 cut(s) 36, 336
Sau3AI GATC 4 cut(s) 21, 217, 272, 325
SetI ASST 5 cut(s) 11, 66, 108, 202, 366
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 2 cut(s) 185, 240
SsiI CCGC 3 cut(s) 35, 38, 336
TaaI ACNGT 2 cut(s) 31, 280
TaiI ACGT 2 cut(s) 66, 108
TaqI TCGA 2 cut(s) 77, 223
TasI AATT 2 cut(s) 185, 240
TauI GCSGC 2 cut(s) 38, 338
TscAI CASTG 2 cut(s) 187, 283
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspRI CASTG 2 cut(s) 187, 283
XapI RAATTY 1 cut(s) 240
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.