Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040019.1

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 531

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040019.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 329 bp

atgagaggaggacctcctcctttttctctcaagctaatcccttccaatataataacccccctcaaaagaacaagaatcaaccgccaccgaccaccaaccttgtgcctcggcaactccatgggcgacgaaggcggcgcttcaacgacggagactcgaccaattgaggcgccggcgaggaagaaagaagaccaagagccggaaaaggaagtgccgcctccgccgccgccggagaagccggagcccggcgattgctgcggcagcggttgcgtccgatgcgtttgggacgtgtattacgacgagctcgacgaatataacaagctctacaaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

109

Amino Acids

12.16

Weight (kDa)

5.86

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	8 cut(s)	82, 132, 212, 218, 221, 224, 255, 261
AcyI	GRCGYC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	196, 242
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	141
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	3 cut(s)	34, 301, 319
AluI	AGCT	3 cut(s)	34, 301, 319
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	252, 258
AspLEI	GCGC	2 cut(s)	137, 169
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	243, 303
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	239, 270
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	143
BfoI	RGCGCY	2 cut(s)	138, 170
BisI	GCNGC	7 cut(s)	133, 212, 221, 224, 253, 256, 259
BlsI	GCNGC	7 cut(s)	134, 213, 222, 225, 254, 257, 260
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	168, 240
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	106, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 242
Bse118I	RCCGGY	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	106, 117
BseLI	CCNNNNNNNGG	2 cut(s)	196, 242
BseRI	GAGGAG	2 cut(s)	6, 21
BseXI	GCAGC	2 cut(s)	239, 270
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	5 cut(s)	170, 197, 227, 236, 243
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	196, 242
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	243, 303
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	8 cut(s)	82, 132, 212, 218, 221, 224, 255, 261
BspLI	GGNNCC	2 cut(s)	168, 240
BspT107I	GGYRCC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	106, 117
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	117
BstH2I	RGCGCY	2 cut(s)	138, 170
BstHHI	GCGC	2 cut(s)	137, 169
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 217, 220, 232, 252, 258, 264, 273
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	239, 270
BstV2I	GAAGAC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	137, 169
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	34, 196, 235, 241, 301, 319
CviKI_1	RGCY	6 cut(s)	34, 196, 235, 241, 301, 319
DinI	GGCGCC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	243, 303
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	243, 303
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	121
FaiI	YATR	3 cut(s)	50, 119, 312
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	7 cut(s)	133, 212, 221, 224, 253, 256, 259
FriOI	GRGCYC	2 cut(s)	243, 303
Fsp4HI	GCNGC	7 cut(s)	133, 212, 221, 224, 253, 256, 259
GlaI	GCGC	2 cut(s)	136, 168
GluI	GCNGC	7 cut(s)	133, 212, 221, 224, 253, 256, 259
HaeII	RGCGCY	2 cut(s)	138, 170
HapII	CCGG	5 cut(s)	170, 197, 227, 236, 243
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	137, 169
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	2 cut(s)	135, 167
HinP1I	GCGC	2 cut(s)	135, 167
HinfI	GANTC	2 cut(s)	75, 151
HpaII	CCGG	5 cut(s)	170, 197, 227, 236, 243
Hpy188I	TCNGA	1 cut(s)	272
Hpy99I	CGWCG	4 cut(s)	128, 148, 299, 308
HpyAV	CCTTC	2 cut(s)	51, 122
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 217, 220, 232, 252, 258, 264, 273
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	2 cut(s)	135, 167
KasI	GGCGCC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	183, 210, 240, 249, 256
Lsp1109I	GCAGC	2 cut(s)	239, 270
LweI	GCATC	1 cut(s)	263
MaeII	ACGT	1 cut(s)	285
MboII	GAAGA	2 cut(s)	190, 197
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	243, 303
MluCI	AATT	1 cut(s)	159
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	7 cut(s)	24, 27, 71, 116, 157, 168, 225
MreI	CGCCGGCG	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	5 cut(s)	170, 197, 227, 236, 243
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	8 cut(s)	129, 217, 220, 232, 252, 258, 264, 273
NaeI	GCCGGC	1 cut(s)	171
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	243
NcoI	CCATGG	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	168, 240
NmeAIII	GCCGAG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	3 cut(s)	291, 300, 303
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	7 cut(s)	134, 213, 222, 225, 254, 257, 260
PleI	GAGTC	1 cut(s)	145
PluTI	GGCGCC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	168, 240
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	303
SatI	GCNGC	7 cut(s)	133, 212, 221, 224, 253, 256, 259
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	243, 303
SetI	ASST	6 cut(s)	16, 36, 101, 288, 303, 321
SfaNI	GCATC	1 cut(s)	263
SfoI	GGCGCC	1 cut(s)	168
SgrAI	CRCCGGYG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	8 cut(s)	82, 132, 212, 218, 221, 224, 255, 261
SspDI	GGCGCC	1 cut(s)	166
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	154, 303
TasI	AATT	1 cut(s)	159
TauI	GCSGC	5 cut(s)	135, 214, 223, 226, 258
TfiI	GAWTC	1 cut(s)	75
TseI	GCWGC	2 cut(s)	252, 258
TspGWI	ACGGA	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.