Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

10849590 .. 10851312

Gene Structure 1723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCAGCCCGGGGCCCACACCGTCTCGGCGGCCATGAGAGGAGGACCTCCTCCTTTTTCTCTCAAGCTAATCCCTCCCAATATAATAACCCCCCTCAAAAGAACAAGAATCAACCGCCACCGACCACCAACCTTGTGCCTCGGCAACTCCATGGGCGACGAAGGCGGCGCGCCGACGAGGAAAAAAGAAGACGAAGAGCAGGAAAAGGAAGTCCCGCCGCCTCCGCCGCCGCCGGAGAAGCCGGAGCCCGGCGATTGCTGCGGCAGCGGTTGCGTCCGATGCGTTTGGGACGTGTATTACGACGAGCTCGACGAATATAACAAGCTCTACAAAAAGGAATGTCGTAACAGATCGATCGGTGAGGATATGGGGAGGTCGGAGTTTGTGATCGTCACGGTGGCGGCGGTTCTGCTGTTGTTGGGAAACGACGTCGCTGAGGCTTCGAGTTCACCATCGGCGTTTGTGCAGAACGTCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCGTATTGCCCGTATTGCTTGCGTGCCAAGCGCATATTCAGTGAATTACATGAGCAACCTTATGTTGTAGAACTTGATCTTCGAGATGATGGGGGGCAAATTCAGAGTGTTCTTCTAGATGTGGTAGGCCGATCCACTGTCCCACAAGTATTTGTGAATGGCAAGCACATCGGTGGTTCTGATGATCTCAAAGCCGCTGTTGCGAGTGGCCAACTTCAGAAGCTTCTTAGCATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

248

Amino Acids

27.13

Weight (kDa)

6.13

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	75 - 111	6.5e-12	Oxidoreductase-like protein, N-terminal
Glutaredoxin	PF00462	164 - 226	2e-16	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
AccII	CGCG	1 cut(s)	170
AclWI	GGATC	1 cut(s)	633
AcoI	YGGCCR	2 cut(s)	30, 715
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AleI	CACNNNNGTG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	67, 307, 325, 730
AluI	AGCT	4 cut(s)	67, 307, 325, 730
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	633
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	4 cut(s)	12, 30, 634, 715
ApaI	GGGCCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	4, 258, 264
ApoI	RAATTY	1 cut(s)	606
AscI	GGCGCGCC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	170, 172, 540
AspS9I	GGNCC	3 cut(s)	12, 13, 44
AsuC2I	CCSGG	3 cut(s)	9, 10, 249
AsuHPI	GGTGA	2 cut(s)	371, 441
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	717
BanII	GRGCYC	3 cut(s)	16, 249, 309
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	16, 245, 276
BccI	CCATC	3 cut(s)	460, 503, 590
BcgI	CGANNNNNNTGC	2 cut(s)	658, 692
BcnI	CCSGG	3 cut(s)	9, 10, 249
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	623
Bme1390I	CCNGG	3 cut(s)	9, 10, 249
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	3 cut(s)	12, 13, 44
BmiI	GGNNCC	3 cut(s)	13, 14, 246
BmrFI	CCNGG	3 cut(s)	9, 10, 249
BmsI	GCATC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	9, 10, 249
Bsa29I	ATCGAT	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	8, 9, 139, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	353
BseDI	CCNNGG	4 cut(s)	8, 9, 139, 150
BseJI	GATNNNNATC	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	426
BsePI	GCGCGC	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	39, 54
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	16, 245, 276
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	4 cut(s)	14, 32, 636, 717
BshVI	ATCGAT	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	9, 233, 242, 249
BslFI	GGGAC	3 cut(s)	197, 302, 632
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	3 cut(s)	197, 302, 632
BsnI	GGCC	4 cut(s)	14, 32, 636, 717
BsoBI	CYCGRG	1 cut(s)	8
Bsp120I	GGGCCC	1 cut(s)	12
Bsp1286I	GDGCHC	3 cut(s)	16, 249, 309
Bsp143I	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	4 cut(s)	14, 32, 636, 717
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	3 cut(s)	13, 14, 246
BspPI	GGATC	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	8, 9, 139, 150
BssHII	GCGCGC	1 cut(s)	168
BssMI	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	22, 397, 646
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	429
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	4 cut(s)	170, 527, 531, 671
BstDEI	CTNAG	2 cut(s)	435, 734
BstDSI	CCRYGG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	170, 172, 540
BstKTI	GATC	6 cut(s)	353, 357, 390, 586, 641, 694
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
BstMCI	CGRYCG	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	7, 8, 247
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	16, 245, 276
BstV2I	GAAGAC	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	4 cut(s)	14, 32, 636, 717
BsuTUI	ATCGAT	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	553, 642
Cac8I	GCNNGC	4 cut(s)	170, 527, 531, 671
CfoI	GCGC	3 cut(s)	170, 172, 540
Cfr13I	GGNCC	3 cut(s)	12, 13, 44
Cfr9I	CCCGGG	1 cut(s)	8
ClaI	ATCGAT	1 cut(s)	353
CseI	GACGC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	3 cut(s)	34, 151, 557
DdeI	CTNAG	2 cut(s)	435, 734
DpnI	GATC	6 cut(s)	352, 356, 389, 585, 640, 693
DpnII	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
EaeI	YGGCCR	2 cut(s)	30, 715
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	3 cut(s)	16, 249, 309
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	2 cut(s)	12, 44
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	3 cut(s)	16, 249, 309
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	37, 154, 560
FaiI	YATR	9 cut(s)	35, 83, 152, 318, 368, 542, 558, 570, 740
FaqI	GGGAC	3 cut(s)	197, 302, 632
FatI	CATG	3 cut(s)	33, 150, 556
FauI	CCCGC	1 cut(s)	222
FriOI	GRGCYC	3 cut(s)	16, 249, 309
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	3 cut(s)	169, 171, 539
HaeIII	GGCC	4 cut(s)	14, 32, 636, 717
HapII	CCGG	4 cut(s)	9, 233, 242, 249
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	3 cut(s)	170, 172, 540
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	37, 154, 560
Hin6I	GCGC	3 cut(s)	168, 170, 538
HinP1I	GCGC	3 cut(s)	168, 170, 538
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	4 cut(s)	9, 233, 242, 249
HphI	GGTGA	2 cut(s)	371, 441
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	5 cut(s)	278, 379, 612, 688, 726
Hpy188III	TCNNGA	2 cut(s)	590, 623
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	6 cut(s)	161, 178, 305, 314, 431, 434
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	3 cut(s)	22, 397, 646
HpyCH4IV	ACGT	3 cut(s)	291, 429, 471
HpyCH4V	TGCA	2 cut(s)	4, 466
HpyF3I	CTNAG	2 cut(s)	435, 734
HpySE526I	ACGT	3 cut(s)	291, 429, 471
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	37, 154, 560
HspAI	GCGC	3 cut(s)	168, 170, 538
Kzo9I	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	22, 185, 246, 255, 262
Lsp1109I	GCAGC	3 cut(s)	16, 245, 276
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	3 cut(s)	291, 429, 471
MaeIII	GTNAC	2 cut(s)	344, 391
MalI	GATC	6 cut(s)	352, 356, 389, 585, 640, 693
MboI	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
MboII	GAAGA	5 cut(s)	200, 206, 490, 578, 611
MhlI	GDGCHC	3 cut(s)	16, 249, 309
MlsI	TGGCCA	1 cut(s)	717
MluCI	AATT	2 cut(s)	551, 606
MluNI	TGGCCA	1 cut(s)	717
MmeI	TCCRAC	2 cut(s)	357, 507
Mox20I	TGGCCA	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	678
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	267, 704
MspI	CCGG	4 cut(s)	9, 233, 242, 249
MspR9I	CCNGG	3 cut(s)	9, 10, 249
MvnI	CGCG	1 cut(s)	170
NciI	CCSGG	3 cut(s)	9, 10, 249
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
NlaIII	CATG	3 cut(s)	37, 154, 560
NlaIV	GGNNCC	3 cut(s)	13, 14, 246
NmeAIII	GCCGAG	2 cut(s)	5, 120
NmuCI	GTSAC	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	678
PalAI	GGCGCGCC	1 cut(s)	168
PauI	GCGCGC	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	4 cut(s)	297, 306, 309, 515
PfeI	GAWTC	1 cut(s)	108
Ple19I	CGATCG	1 cut(s)	357
PpuMI	RGGWCCY	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	13, 14, 246
PspOMI	GGGCCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	12, 13, 44
PspPPI	RGGWCCY	1 cut(s)	44
PsrI	GAACNNNNNNTAC	2 cut(s)	461, 493
PteI	GCGCGC	1 cut(s)	168
PvuI	CGATCG	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	189
Sau3AI	GATC	6 cut(s)	350, 354, 387, 583, 638, 691
Sau96I	GGNCC	3 cut(s)	12, 13, 44
ScrFI	CCNGG	3 cut(s)	9, 10, 249
SduI	GDGCHC	3 cut(s)	16, 249, 309
SfaNI	GCATC	1 cut(s)	269
SgsI	GGCGCGCC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	44
SmaI	CCCGGG	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	551, 606
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	7, 8, 247
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	22, 397, 646
TaiI	ACGT	3 cut(s)	294, 432, 474
TaqI	TCGA	4 cut(s)	309, 353, 443, 589
TasI	AATT	2 cut(s)	551, 606
TauI	GCSGC	8 cut(s)	32, 168, 220, 229, 232, 264, 404, 704
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	2 cut(s)	553, 649
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	3 cut(s)	4, 258, 264
Tsp45I	GTSAC	1 cut(s)	391
TspMI	CCCGGG	1 cut(s)	8
TspRI	CASTG	2 cut(s)	553, 649
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	606
XbaI	TCTAGA	1 cut(s)	622
XmaI	CCCGGG	1 cut(s)	8
XspI	CTAG	1 cut(s)	623
ZraI	GACGTC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.