Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

16153857 .. 16154879

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTTGGGAATGGTGTAACAGCGGGATCGCTGTGTCGTGGTGGGAAGATGCGTAGGGCAGAGTTATTGGGCGGTGCTGTGATCGCGGCGGTGGCGGCGACTCTGCTACTTTTTGGAAACGCCTTCGTTGTGGAGGCTTCGGCTTCGTCTTCGGCGGCTATCGTGCAGAACGCCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCCTATTGCCCGTACGTTCTCTCCCTCAAACTTGGAAAATCGTATTGCTTGCATGCCAAGCGCGTATTTGCTGAACTACATGAGCATCCGTTTGTTGTCGATCTTGATCTTCGAGATGATGGAGCTCAAATTCAGGGTGTTCTTCTAGATGTGGTCGGCCGAACCACTGTCCCGCAGATTTTTGTGAATGGAAAGCACATTGGCGGCTCTGATGACCTCAAAGCAGCGGTTCTGAGTGGCCAGCTTCAGACTCTTCTTAGTATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

159

Amino Acids

16.59

Weight (kDa)

8.84

Isoelectric Point (pI)

24.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	86, 270
AciI	CCGC	9 cut(s)	23, 72, 86, 89, 95, 155, 380, 411, 434
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	2 cut(s)	364, 445
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	221
AluBI	AGCT	2 cut(s)	332, 451
AluI	AGCT	2 cut(s)	332, 451
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	364, 445
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	182, 203, 320
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	5 cut(s)	87, 96, 156, 412, 432
BlsI	GCNGC	5 cut(s)	88, 97, 157, 413, 433
BmsI	GCATC	2 cut(s)	39, 301
BpiI	GAAGAC	1 cut(s)	141
BsaBI	GATNNNNATC	2 cut(s)	194, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse8I	GATNNNNATC	2 cut(s)	194, 312
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	2 cut(s)	194, 312
BseMII	CTCAG	1 cut(s)	431
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	185
Bsh1236I	CGCG	2 cut(s)	86, 270
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	366, 447
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	334
BsiWI	CGTACG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	366, 447
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	26, 81, 307, 313
BspACI	CCGC	9 cut(s)	23, 72, 86, 89, 95, 155, 380, 411, 434
BspANI	GGCC	2 cut(s)	366, 447
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	86, 270
BspPI	GGATC	1 cut(s)	34
BssMI	GATC	4 cut(s)	26, 81, 307, 313
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	257, 261, 449
BstDEI	CTNAG	2 cut(s)	440, 464
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	2 cut(s)	86, 270
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	29, 84, 310, 316
BstMBI	GATC	4 cut(s)	26, 81, 307, 313
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 95, 265
BstNSI	RCATGY	1 cut(s)	263
BstUI	CGCG	2 cut(s)	86, 270
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	141
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	366, 447
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	257, 261, 449
CfoI	GCGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	260, 287
CviJI	RGCY	8 cut(s)	137, 143, 158, 332, 366, 414, 447, 451
CviKI_1	RGCY	8 cut(s)	137, 143, 158, 332, 366, 414, 447, 451
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	440, 464
DpnI	GATC	4 cut(s)	28, 83, 309, 315
DpnII	GATC	4 cut(s)	26, 81, 307, 313
EaeI	YGGCCR	2 cut(s)	364, 445
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	332
EclXI	CGGCCG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	2 cut(s)	263, 290
FaiI	YATR	3 cut(s)	261, 288, 470
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	259, 286
FauI	CCCGC	2 cut(s)	16, 387
Fnu4HI	GCNGC	5 cut(s)	87, 96, 156, 412, 432
FokI	GGATG	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	5 cut(s)	87, 96, 156, 412, 432
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	5 cut(s)	87, 96, 156, 412, 432
HaeIII	GGCC	2 cut(s)	366, 447
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	263, 290
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	100, 457
Hpy188I	TCNGA	3 cut(s)	418, 441, 456
Hpy188III	TCNNGA	3 cut(s)	311, 320, 353
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	166, 259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 95, 265
HpyF3I	CTNAG	2 cut(s)	440, 464
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	263, 290
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	26, 81, 307, 313
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	2 cut(s)	326, 461
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	39, 301
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	28, 83, 309, 315
MboI	GATC	4 cut(s)	26, 81, 307, 313
MboII	GAAGA	6 cut(s)	58, 141, 190, 308, 341, 452
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	447
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	94, 451
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	3 cut(s)	127, 242, 434
Mox20I	TGGCCA	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	447
MspA1I	CMGCKG	2 cut(s)	23, 434
MvnI	CGCG	2 cut(s)	86, 270
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 95, 265
NdeII	GATC	4 cut(s)	26, 81, 307, 313
NlaIII	CATG	2 cut(s)	263, 290
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
Pfl23II	CGTACG	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	88, 97, 157, 413, 433
PleI	GAGTC	2 cut(s)	94, 451
PpsI	GAGTC	2 cut(s)	94, 451
Psp124BI	GAGCTC	1 cut(s)	334
PspLI	CGTACG	1 cut(s)	219
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	334
SatI	GCNGC	5 cut(s)	87, 96, 156, 412, 432
Sau3AI	GATC	4 cut(s)	26, 81, 307, 313
SchI	GAGTC	2 cut(s)	94, 451
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	4 cut(s)	225, 334, 426, 453
SfaNI	GCATC	2 cut(s)	39, 301
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	9 cut(s)	23, 72, 86, 89, 95, 155, 380, 411, 434
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	306, 319
TasI	AATT	1 cut(s)	336
TauI	GCSGC	4 cut(s)	89, 98, 158, 414
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	431
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	336
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.