Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

11412202 .. 11414492

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1136700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGACGCAGCCGCACATCGTCATTGTCTGCGGGAGCTCCTATCGTATACCTCAGCACTAGCCAATCAGAACGCGCCAAAACCAGAGAATGCCCCGCCCCGCACGGTGTTGGCCATGAGAGGGGGAGCTATAAGCATCCGAATCACCACCAGATTCAACCCCCAACGACCCCGACCACGGCTACCCTTCTGTGCGCGCACCACCATCCACAATAACTCCATGGCCGACCGCGACGGCGATGCGGCAGCAGCAGCAATTAAGACTCGAGTCCCTCAACCGATTGAAGCAGCGAAGCCGAAAGAGGAAGAAGGACAGTCAGCGGAGACATCACCTCCGCCTCCGCCGCCAGAGAAGCCGGAGCCGGGCGATTGCTGCGGCAGCGGATGCGTCCGGTGCGTGTGGGATGTGTATTACGACGAGCTCGACGAATACAACAAGCTGTACAAATCGGGATCGCGGTGTCGTGGAGGGAAGATGCGTAGGTCAGAGTTCATGGGCGTTGCTGTGATCGCGGCGGTGGCGGCGGCTCTGCTACTGTTTGGAAACGCCGTCGCTGTGGAGGCTTCGGCTTCGTCTTCGGCGGCGTTCGTGCAGAACGCCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCCTATTGCCCGTATTGCTTGCGTGCCAAGCGCATGTTTGCCGAATTACATGAGCATCCGTTTGTTGTCGAACTTGATCTTCGAGATGATGGAGCTCAAATTCAGAGTGTTCTTCTAGATGTGGTAGGCCGAACCACTGTCCCGCAGATTTTTGTGAATGGAAAGCACATTGGCGGCTCTGATGACCTCAAAGCGGCAGTTCTGAGTGGCCAGCTTCAGAAGCTTCTTAGTATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

291

Amino Acids

31.41

Weight (kDa)

8.7

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	113 - 147	1.9e-12	Oxidoreductase-like protein, N-terminal
Glutaredoxin	PF00462	206 - 268	8.2e-15	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	5 cut(s)	74, 196, 231, 457, 512
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	3 cut(s)	111, 222, 841
AcsI	RAATTY	1 cut(s)	732
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	4 cut(s)	120, 177, 362, 826
AgsI	TTSAA	2 cut(s)	157, 284
AluBI	AGCT	7 cut(s)	37, 128, 421, 439, 728, 847, 856
AluI	AGCT	7 cut(s)	37, 128, 421, 439, 728, 847, 856
Alw21I	GWGCWC	3 cut(s)	39, 423, 730
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	4 cut(s)	111, 222, 760, 841
ApeKI	GCWGC	7 cut(s)	8, 245, 248, 251, 287, 372, 378
ApoI	RAATTY	1 cut(s)	732
AspLEI	GCGC	4 cut(s)	76, 196, 198, 666
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	136, 321
AvaI	CYCGRG	1 cut(s)	264
BalI	TGGCCA	2 cut(s)	113, 843
BanII	GRGCYC	3 cut(s)	39, 423, 730
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	3 cut(s)	39, 423, 730
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	7 cut(s)	20, 257, 260, 263, 299, 359, 390
BccI	CCATC	4 cut(s)	212, 608, 629, 716
BceAI	ACGGC	3 cut(s)	194, 250, 533
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	59, 749
Bme1390I	CCNGG	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	5 cut(s)	144, 229, 374, 465, 697
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	176, 219
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 316, 346
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 177, 362, 826
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	176, 219
BseGI	GGATG	5 cut(s)	135, 204, 389, 409, 688
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	4 cut(s)	120, 177, 362, 826
BseMII	CTCAG	2 cut(s)	66, 827
BsePI	GCGCGC	1 cut(s)	194
BseXI	GCAGC	7 cut(s)	20, 257, 260, 263, 299, 359, 390
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	5 cut(s)	74, 196, 231, 457, 512
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	4 cut(s)	113, 224, 762, 843
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	3 cut(s)	39, 423, 730
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	356, 362, 391
BslFI	GGGAC	2 cut(s)	254, 758
BslI	CCNNNNNNNGG	4 cut(s)	120, 177, 362, 826
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	254, 758
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	4 cut(s)	113, 224, 762, 843
BsoBI	CYCGRG	1 cut(s)	264
Bsp1286I	GDGCHC	3 cut(s)	39, 423, 730
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	452, 507, 709
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	4 cut(s)	113, 224, 762, 843
BspCNI	CTCAG	2 cut(s)	65, 828
BspFNI	CGCG	5 cut(s)	74, 196, 231, 457, 512
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	176, 219
BssHII	GCGCGC	1 cut(s)	194
BssMI	GATC	3 cut(s)	452, 507, 709
BssNAI	GTATAC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	48
Bst4CI	ACNGT	4 cut(s)	106, 315, 537, 772
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	4 cut(s)	196, 653, 657, 845
BstDEI	CTNAG	3 cut(s)	52, 836, 860
BstDSI	CCRYGG	2 cut(s)	176, 219
BstF5I	GGATG	5 cut(s)	135, 204, 389, 409, 688
BstFNI	CGCG	5 cut(s)	74, 196, 231, 457, 512
BstHHI	GCGC	4 cut(s)	76, 196, 198, 666
BstKTI	GATC	3 cut(s)	455, 510, 712
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	452, 507, 709
BstMCI	CGRYCG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	670
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	361
BstUI	CGCG	5 cut(s)	74, 196, 231, 457, 512
BstV1I	GCAGC	7 cut(s)	20, 257, 260, 263, 299, 359, 390
BstV2I	GAAGAC	1 cut(s)	567
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	113, 224, 762, 843
BtgI	CCRYGG	2 cut(s)	176, 219
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	5 cut(s)	135, 204, 389, 409, 688
BtsIMutI	CAGTG	1 cut(s)	768
Cac8I	GCNNGC	4 cut(s)	196, 653, 657, 845
CfoI	GCGC	4 cut(s)	76, 196, 198, 666
CseI	GACGC	2 cut(s)	14, 376
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	5 cut(s)	115, 220, 493, 667, 683
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	52, 836, 860
DpnI	GATC	3 cut(s)	454, 509, 711
DpnII	GATC	3 cut(s)	452, 507, 709
EaeI	YGGCCR	3 cut(s)	111, 222, 841
EciI	GGCGGA	2 cut(s)	324, 330
Ecl136II	GAGCTC	3 cut(s)	37, 421, 728
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	3 cut(s)	39, 423, 730
Eco53kI	GAGCTC	3 cut(s)	37, 421, 728
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	264
EcoICRI	GAGCTC	3 cut(s)	37, 421, 728
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	3 cut(s)	39, 423, 730
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	118, 223, 496, 670, 686
FaiI	YATR	8 cut(s)	48, 116, 131, 221, 494, 668, 684, 866
FaqI	GGGAC	2 cut(s)	254, 758
FatI	CATG	5 cut(s)	114, 219, 492, 666, 682
FauI	CCCGC	4 cut(s)	24, 102, 107, 783
FblI	GTMKAC	1 cut(s)	47
FokI	GGATG	5 cut(s)	122, 191, 396, 416, 675
FriOI	GRGCYC	3 cut(s)	39, 423, 730
FspBI	CTAG	2 cut(s)	59, 749
GlaI	GCGC	4 cut(s)	75, 195, 197, 665
HaeIII	GGCC	4 cut(s)	113, 224, 762, 843
HapII	CCGG	3 cut(s)	356, 362, 391
HgaI	GACGC	2 cut(s)	14, 376
HhaI	GCGC	4 cut(s)	76, 196, 198, 666
Hin1II	CATG	5 cut(s)	118, 223, 496, 670, 686
Hin6I	GCGC	4 cut(s)	74, 194, 196, 664
HinP1I	GCGC	4 cut(s)	74, 194, 196, 664
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	4 cut(s)	141, 153, 262, 267
HpaII	CCGG	3 cut(s)	356, 362, 391
HphI	GGTGA	2 cut(s)	136, 321
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	7 cut(s)	69, 140, 487, 738, 814, 837, 852
Hpy188III	TCNNGA	3 cut(s)	450, 716, 749
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	4 cut(s)	236, 419, 428, 554
HpyAV	CCTTC	2 cut(s)	196, 302
HpyCH4III	ACNGT	4 cut(s)	106, 315, 537, 772
HpyCH4V	TGCA	1 cut(s)	592
HpyF3I	CTNAG	3 cut(s)	52, 836, 860
Hsp92II	CATG	5 cut(s)	118, 223, 496, 670, 686
HspAI	GCGC	4 cut(s)	74, 194, 196, 664
Kzo9I	GATC	3 cut(s)	452, 507, 709
LmnI	GCTCC	5 cut(s)	34, 42, 125, 358, 725
LpnPI	CCDG	7 cut(s)	96, 163, 360, 369, 375, 404, 857
Lsp1109I	GCAGC	7 cut(s)	20, 257, 260, 263, 299, 359, 390
LweI	GCATC	5 cut(s)	144, 229, 374, 465, 697
MaeI	CTAG	2 cut(s)	59, 749
MalI	GATC	3 cut(s)	454, 509, 711
MboI	GATC	3 cut(s)	452, 507, 709
MboII	GAAGA	6 cut(s)	317, 484, 567, 616, 704, 737
MhlI	GDGCHC	3 cut(s)	39, 423, 730
MlsI	TGGCCA	2 cut(s)	113, 843
MluCI	AATT	3 cut(s)	255, 677, 732
MluNI	TGGCCA	2 cut(s)	113, 843
MlyI	GAGTC	2 cut(s)	256, 276
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	9 cut(s)	61, 113, 282, 295, 342, 348, 461, 553, 830
Mox20I	TGGCCA	2 cut(s)	113, 843
MscI	TGGCCA	2 cut(s)	113, 843
MseI	TTAA	1 cut(s)	258
Msp20I	TGGCCA	2 cut(s)	113, 843
MspA1I	CMGCKG	2 cut(s)	320, 381
MspI	CCGG	3 cut(s)	356, 362, 391
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	94
MvnI	CGCG	5 cut(s)	74, 196, 231, 457, 512
NciI	CCSGG	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	452, 507, 709
NlaIII	CATG	5 cut(s)	118, 223, 496, 670, 686
NlaIV	GGNNCC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	670
PaeR7I	CTCGAG	1 cut(s)	264
PauI	GCGCGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 423
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	141, 153
PleI	GAGTC	2 cut(s)	256, 275
PpsI	GAGTC	2 cut(s)	256, 275
PshAI	GACNNNNGTC	1 cut(s)	266
Psp124BI	GAGCTC	3 cut(s)	39, 423, 730
PspN4I	GGNNCC	1 cut(s)	360
PspXI	VCTCGAGB	1 cut(s)	264
PsrI	GAACNNNNNNTAC	2 cut(s)	587, 619
PteI	GCGCGC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SacI	GAGCTC	3 cut(s)	39, 423, 730
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	452, 507, 709
SchI	GAGTC	2 cut(s)	256, 276
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	39, 423, 730
SfaNI	GCATC	5 cut(s)	144, 229, 374, 465, 697
Sfr274I	CTCGAG	1 cut(s)	264
SlaI	CTCGAG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	255, 677, 732
SspMI	CTAG	2 cut(s)	59, 749
SstI	GAGCTC	3 cut(s)	39, 423, 730
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	106, 315, 537, 772
TaqI	TCGA	4 cut(s)	265, 423, 702, 715
TasI	AATT	3 cut(s)	255, 677, 732
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	141, 153
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	775
TseI	GCWGC	7 cut(s)	8, 245, 248, 251, 287, 372, 378
TspDTI	ATGAA	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	1 cut(s)	775
XapI	RAATTY	1 cut(s)	732
XbaI	TCTAGA	1 cut(s)	748
XceI	RCATGY	1 cut(s)	670
XhoI	CTCGAG	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	59, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.