Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Forward (+)

7591489 .. 7592435

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACGCAGCCGCAAATCGTCATTGTCTGCGGGAGCTTCTACCGTATACCTCAGCGCTAGCCAATCAGAACGCGGCAAAACCAGAGAATGCCCCGACCCCCACGGTCTTGGCCATGAGAGGAGGAGCTATAAGCATCCGAATCACCACCAGAATCAACCCCCAACGACCTCGGCCACGGCTACCCTTCTGCGCGCGCACCACCATCCACAACAACTCCATGGCCGACCGCGACGGCGATGCAGCGGCAGAAGCAGCAGCAACGAAGACTCGAGTCCCTCAACCGATTGAAGCAGCAAAGCCGAAAGAGGGAGAAGGAAAGTCAGCGGAGAAATCACCTCCGCCTCCGCCGCCAGAGAAGCCGGAACCGGGTGATTGCTGCGGCAGCGGATGCGTCCGGTGCGTGTGGGATGTGTATTACGACGAGCTCGACGAATACAACAAGCTGTACAAATCGGGATCGCGGTGTCGTGGAGGGAAGATGCGTAGGTCAGAGTTAATGGGCGGTGCTGTGATCGCGGCGGTGGCGGCGGCTCTGCTACTGTTTGGAAACGCCGTCGTTGTGGAGGCTTCAGCTTCGTCTTCGGCGGCGTTCGTGCAGAACGCCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCCTATTGCCCGTACGTCATCTCCCTCAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

225

Amino Acids

23.94

Weight (kDa)

9.12

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	115 - 149	1.6e-12	Oxidoreductase-like protein, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	6 cut(s)	74, 194, 196, 231, 463, 518
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	3 cut(s)	111, 173, 222
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	2 cut(s)	449, 653
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	308, 368
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	5 cut(s)	37, 128, 427, 445, 575
AluI	AGCT	5 cut(s)	37, 128, 427, 445, 575
Alw21I	GWGCWC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	3 cut(s)	111, 173, 222
ApeKI	GCWGC	7 cut(s)	8, 242, 254, 257, 293, 378, 384
AspLEI	GCGC	4 cut(s)	58, 194, 196, 198
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	136, 327, 383
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	272, 573
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	7 cut(s)	20, 254, 266, 269, 305, 365, 396
BccI	CCATC	3 cut(s)	212, 614, 635
BceAI	ACGGC	3 cut(s)	194, 250, 539
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	4 cut(s)	144, 229, 380, 471
BmtI	GCTAGC	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	2 cut(s)	272, 573
Bpu10I	CCTNAGC	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	4 cut(s)	102, 170, 176, 219
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 644, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 368
Bse8I	GATNNNNATC	1 cut(s)	626
BseDI	CCNNGG	4 cut(s)	102, 170, 176, 219
BseGI	GGATG	4 cut(s)	135, 204, 395, 415
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	2 cut(s)	308, 368
BseMII	CTCAG	1 cut(s)	66
BsePI	GCGCGC	2 cut(s)	192, 194
BseRI	GAGGAG	2 cut(s)	135, 138
BseXI	GCAGC	7 cut(s)	20, 254, 266, 269, 305, 365, 396
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	6 cut(s)	74, 194, 196, 231, 463, 518
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	113, 175, 224
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	362, 368, 397
BsiWI	CGTACG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	308, 368
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	113, 175, 224
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	458, 513
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	3 cut(s)	113, 175, 224
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	6 cut(s)	74, 194, 196, 231, 463, 518
BspLI	GGNNCC	1 cut(s)	366
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	447
BssECI	CCNNGG	4 cut(s)	102, 170, 176, 219
BssHII	GCGCGC	2 cut(s)	192, 194
BssMI	GATC	2 cut(s)	458, 513
BssNAI	GTATAC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	45, 106, 543
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	60, 194, 196
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	3 cut(s)	102, 176, 219
BstF5I	GGATG	4 cut(s)	135, 204, 395, 415
BstFNI	CGCG	6 cut(s)	74, 194, 196, 231, 463, 518
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	4 cut(s)	58, 194, 196, 198
BstKTI	GATC	2 cut(s)	461, 516
BstMBI	GATC	2 cut(s)	458, 513
BstMCI	CGRYCG	1 cut(s)	229
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	367
BstUI	CGCG	6 cut(s)	74, 194, 196, 231, 463, 518
BstV1I	GCAGC	7 cut(s)	20, 254, 266, 269, 305, 365, 396
BstV2I	GAAGAC	2 cut(s)	272, 573
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	113, 175, 224
BtgI	CCRYGG	3 cut(s)	102, 176, 219
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	135, 204, 395, 415
Cac8I	GCNNGC	3 cut(s)	60, 194, 196
CfoI	GCGC	4 cut(s)	58, 194, 196, 198
CseI	GACGC	2 cut(s)	14, 382
Csp6I	GTAC	2 cut(s)	448, 652
CviAII	CATG	2 cut(s)	115, 220
CviQI	GTAC	2 cut(s)	448, 652
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	2 cut(s)	460, 515
DpnII	GATC	2 cut(s)	458, 513
EaeI	YGGCCR	3 cut(s)	111, 173, 222
EciI	GGCGGA	2 cut(s)	330, 336
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	429
Eco47III	AGCGCT	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	118, 223
FaiI	YATR	4 cut(s)	48, 116, 131, 221
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	114, 219
FauI	CCCGC	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	47
FokI	GGATG	4 cut(s)	122, 191, 402, 422
FriOI	GRGCYC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	4 cut(s)	57, 193, 195, 197
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	113, 175, 224
HapII	CCGG	3 cut(s)	362, 368, 397
HgaI	GACGC	2 cut(s)	14, 382
HhaI	GCGC	4 cut(s)	58, 194, 196, 198
Hin1II	CATG	2 cut(s)	118, 223
Hin6I	GCGC	4 cut(s)	56, 192, 194, 196
HinP1I	GCGC	4 cut(s)	56, 192, 194, 196
HinfI	GANTC	4 cut(s)	141, 153, 268, 273
HpaII	CCGG	3 cut(s)	362, 368, 397
HphI	GGTGA	3 cut(s)	136, 327, 383
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	69, 140, 493
Hpy188III	TCNNGA	1 cut(s)	456
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	4 cut(s)	236, 425, 434, 560
HpyAV	CCTTC	2 cut(s)	196, 308
HpyCH4III	ACNGT	3 cut(s)	45, 106, 543
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	242, 598
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	118, 223
HspAI	GCGC	4 cut(s)	56, 192, 194, 196
Kzo9I	GATC	2 cut(s)	458, 513
LmnI	GCTCC	2 cut(s)	34, 125
LpnPI	CCDG	6 cut(s)	96, 163, 366, 375, 381, 410
Lsp1109I	GCAGC	7 cut(s)	20, 254, 266, 269, 305, 365, 396
LweI	GCATC	4 cut(s)	144, 229, 380, 471
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	654
MalI	GATC	2 cut(s)	460, 515
MboI	GATC	2 cut(s)	458, 513
MboII	GAAGA	4 cut(s)	277, 490, 573, 622
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	262, 282
MmeI	TCCRAC	1 cut(s)	639
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	3 cut(s)	245, 326, 387
MspI	CCGG	3 cut(s)	362, 368, 397
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	94
MvnI	CGCG	6 cut(s)	74, 194, 196, 231, 463, 518
NciI	CCSGG	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	458, 513
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	118, 223
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	270
PauI	GCGCGC	2 cut(s)	192, 194
PcsI	WCGNNNNNNNCGW	2 cut(s)	426, 429
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	141, 153
Pfl23II	CGTACG	1 cut(s)	651
PleI	GAGTC	2 cut(s)	262, 281
PpsI	GAGTC	2 cut(s)	262, 281
PshAI	GACNNNNGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	429
PspLI	CGTACG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	366
PspXI	VCTCGAGB	1 cut(s)	270
PsrI	GAACNNNNNNTAC	2 cut(s)	593, 625
PteI	GCGCGC	2 cut(s)	192, 194
RsaI	GTAC	2 cut(s)	449, 653
RsaNI	GTAC	2 cut(s)	448, 652
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	2 cut(s)	458, 513
SchI	GAGTC	2 cut(s)	262, 282
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	4 cut(s)	144, 229, 380, 471
Sfr274I	CTCGAG	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	45, 106, 543
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	2 cut(s)	271, 429
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	9 cut(s)	14, 77, 248, 352, 384, 521, 530, 533, 590
TfiI	GAWTC	2 cut(s)	141, 153
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TseI	GCWGC	7 cut(s)	8, 242, 254, 257, 293, 378, 384
XhoI	CTCGAG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.