Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007071

Physical Location & Seq

Genomic Coordinates Reverse (-)

6831320 .. 6834084

Gene Structure 2765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCCGATGGGCAACACCTTCCGTTTCATATAACCAAATCTGGGCTGCCGCGAGGAGCCATATGTATGGCTCATCCTCATTGCCTGCGCTTCATCGCACCCCATCCTAACCCACCTTCCAACAATGCCCGCCGGGCCCACACCATGAGAGCACCTCTCCCTCTTTCCCTCAAGCTAATCATCCCTTCCAATATAATAACCCTCAACCGCAGCCGAACACGAGCCTTGTGCTTCAGCAACTCCATGGGCGACGAAGGCGGCGGCGCTTCGACGACGGAGACTCGGCCGGTTGAGGCGGCGGAGAAGAAGGAAGAAATAAAACCAGGGGCGGAGAAACCGGAAATTCCGCCGCCGCCGGAGAAGCCGGAGCCCGGCGATTGCTGCGGCAGCGGATGCGTCCGGTGCGTTTGGGACGTGTACTACGACGAGCTCGACGAGTATAACAAGCTCTACAAAACTCGATCGGTGAGGATGGGGAGGTCGGGGTTTGTGATCGTCACTGTGGCGGCGGTGCTGTTGTTGTTGCTGGGAAACGACGTCGTTGAGGCTTCAAAGTCATCATCTGCGTTTGTGCAGAACGTCATCTACTCCAACAAGATTGCTATCTTCTCCAAATCGTATTGCCCGTATTGCATGCGTGCCAAGAGCATATTCAGTGAATTACATGAGCAACCTTATGTTGTTGAACTTGATCTTCGAGATGATGGGGCGCAAATTCAGACTGTTCTTCTAGATGTGGTTGGCCGATCCACTGTCCCACAAGTGTTTGTGAATGGCAAGCACATAGGCGGTTCTGATGATCTCAAAGCCGCTGTTGCGAGTGGTCAACTTCAGAAGCTTCTTAGTATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Glutaredoxin Oxidored-like

Protein Analysis

285

Amino Acids

31.01

Weight (kDa)

8.33

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored-like	PF09791	115 - 150	1.9e-13	Oxidoreductase-like protein, N-terminal
Glutaredoxin	PF00462	200 - 262	7.2e-16	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77370 AT1G77370
fragaria_vesca	FvH4_1g12420
malus_domestica	MD02G1136700.v1.1
prunus_persica	Prupe.7G163800_v2.0.a1 Prupe.7G163800_v2.0.a1
pyrus_communis	pycom02g10810 pycom15g22080
rosa_chinensis	RchiOBHm_Chr2g0100301
rosa_laevigata	RLG00000016953 RLG00000016954
rosa_multiflora	Rmu_sc0003340.1_g000010 Rmu_sc0003340.1_g000011 Rmu_sc0040019.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142380 Rroxscaffold_2G00142390
rosa_rugosa	Rorug02G0087300
rosa_samantha	Rh2AG136300 Rh2AG136400 Rh2BG139800 Rh2BG139900 Rh2CG141600 Rh2CG141700 Rh2DG141800
rosa_wichuraiana	Rw2G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	540
AccII	CGCG	1 cut(s)	52
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	2 cut(s)	284, 742
AcsI	RAATTY	2 cut(s)	342, 714
AcuI	CTGAAG	2 cut(s)	217, 815
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	42, 371
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	552, 686
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	4 cut(s)	175, 430, 448, 838
AluI	AGCT	4 cut(s)	175, 430, 448, 838
Alw21I	GWGCWC	2 cut(s)	154, 432
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	3 cut(s)	135, 284, 742
ApaI	GGGCCC	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	46, 210, 381, 387
ApoI	RAATTY	2 cut(s)	342, 714
AspLEI	GCGC	3 cut(s)	90, 266, 712
AspS9I	GGNCC	2 cut(s)	135, 136
AsuC2I	CCSGG	2 cut(s)	134, 372
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	139
BanII	GRGCYC	3 cut(s)	139, 372, 432
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	154, 432
BbvI	GCAGC	4 cut(s)	33, 222, 368, 399
BccI	CCATC	4 cut(s)	2, 111, 466, 698
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	2 cut(s)	134, 372
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	267
BglI	GCCNNNNNGGC	2 cut(s)	10, 134
Bme1390I	CCNGG	3 cut(s)	134, 324, 372
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	135, 136
BmiI	GGNNCC	3 cut(s)	58, 137, 369
BmrFI	CCNGG	3 cut(s)	134, 324, 372
BmsI	GCATC	1 cut(s)	383
BplI	GAGNNNNNCTC	4 cut(s)	139, 171, 141, 173
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	134, 372
BsaBI	GATNNNNATC	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	243, 323
BsaWI	WCCGGW	2 cut(s)	337, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 371
Bse118I	RCCGGY	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	243, 323
BseGI	GGATG	5 cut(s)	73, 103, 180, 398, 477
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	2 cut(s)	42, 371
BseMI	GCAATG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	139
BseX3I	CGGCCG	1 cut(s)	284
BseXI	GCAGC	4 cut(s)	33, 222, 368, 399
BseYI	CCCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	2 cut(s)	287, 464
BshFI	GGCC	3 cut(s)	137, 286, 744
BsiEI	CGRYCG	2 cut(s)	287, 464
BsiHKAI	GWGCWC	2 cut(s)	154, 432
BsiSI	CCGG	7 cut(s)	133, 287, 338, 356, 365, 372, 400
BslFI	GGGAC	2 cut(s)	425, 740
BslI	CCNNNNNNNGG	2 cut(s)	42, 371
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	425, 740
BsnI	GGCC	3 cut(s)	137, 286, 744
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	4 cut(s)	139, 154, 372, 432
Bsp143I	GATC	5 cut(s)	461, 492, 691, 746, 799
Bsp19I	CCATGG	1 cut(s)	243
BspANI	GGCC	3 cut(s)	137, 286, 744
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	58, 137, 369
BspPI	GGATC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	243, 323
BssMI	GATC	5 cut(s)	461, 492, 691, 746, 799
BssNI	GRCGYC	1 cut(s)	537
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	502, 724, 754
BstACI	GRCGYC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	86, 130, 635, 639, 779
BstDEI	CTNAG	1 cut(s)	842
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	5 cut(s)	73, 103, 180, 398, 477
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	90, 266, 712
BstKTI	GATC	5 cut(s)	464, 495, 694, 749, 802
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	461, 492, 691, 746, 799
BstMCI	CGRYCG	2 cut(s)	287, 464
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	3 cut(s)	132, 322, 370
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	4 cut(s)	33, 222, 368, 399
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	137, 286, 744
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	5 cut(s)	73, 103, 180, 398, 477
BtsIMutI	CAGTG	3 cut(s)	498, 661, 750
Cac8I	GCNNGC	5 cut(s)	86, 130, 635, 639, 779
CfoI	GCGC	3 cut(s)	90, 266, 712
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	135, 136
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	4 cut(s)	145, 244, 634, 665
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	1 cut(s)	842
DpnI	GATC	5 cut(s)	463, 494, 693, 748, 801
DpnII	GATC	5 cut(s)	461, 492, 691, 746, 799
EaeI	YGGCCR	2 cut(s)	284, 742
EagI	CGGCCG	1 cut(s)	284
EciI	GGCGGA	3 cut(s)	314, 336, 344
Ecl136II	GAGCTC	1 cut(s)	430
EclXI	CGGCCG	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	3 cut(s)	139, 372, 432
Eco52I	CGGCCG	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	217, 815
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	3 cut(s)	139, 372, 432
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	148, 247, 637, 668
FaqI	GGGAC	2 cut(s)	425, 740
FatI	CATG	4 cut(s)	144, 243, 633, 664
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	62
FokI	GGATG	5 cut(s)	60, 90, 167, 405, 484
FriOI	GRGCYC	3 cut(s)	139, 372, 432
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	3 cut(s)	89, 265, 711
GsaI	CCCAGC	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	137, 286, 744
HapII	CCGG	7 cut(s)	133, 287, 338, 356, 365, 372, 400
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	3 cut(s)	90, 266, 712
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	4 cut(s)	148, 247, 637, 668
Hin6I	GCGC	3 cut(s)	88, 264, 710
HinP1I	GCGC	3 cut(s)	88, 264, 710
HincII	GTYRAC	1 cut(s)	827
HindII	GTYRAC	1 cut(s)	827
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	7 cut(s)	133, 287, 338, 356, 365, 372, 400
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	418, 827
Hpy188I	TCNGA	3 cut(s)	720, 796, 834
Hpy188III	TCNNGA	2 cut(s)	698, 731
Hpy8I	GTNNAC	2 cut(s)	418, 827
Hpy99I	CGWCG	7 cut(s)	254, 274, 277, 428, 437, 539, 542
HpyAV	CCTTC	5 cut(s)	29, 126, 195, 248, 301
HpyCH4III	ACNGT	3 cut(s)	502, 724, 754
HpyCH4IV	ACGT	3 cut(s)	414, 537, 579
HpyCH4V	TGCA	2 cut(s)	574, 633
HpyF3I	CTNAG	1 cut(s)	842
HpySE526I	ACGT	3 cut(s)	414, 537, 579
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	148, 247, 637, 668
HspAI	GCGC	3 cut(s)	88, 264, 710
Kzo9I	GATC	5 cut(s)	461, 492, 691, 746, 799
LmnI	GCTCC	2 cut(s)	56, 367
Lsp1109I	GCAGC	4 cut(s)	33, 222, 368, 399
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	3 cut(s)	414, 537, 579
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	463, 494, 693, 748, 801
MboI	GATC	5 cut(s)	461, 492, 691, 746, 799
MboII	GAAGA	5 cut(s)	316, 323, 598, 686, 719
MhlI	GDGCHC	4 cut(s)	139, 154, 372, 432
MluCI	AATT	4 cut(s)	342, 659, 714, 850
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	2 cut(s)	144, 615
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	390, 812
MspI	CCGG	7 cut(s)	133, 287, 338, 356, 365, 372, 400
MspR9I	CCNGG	3 cut(s)	134, 324, 372
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	52
NciI	CCSGG	2 cut(s)	134, 372
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	5 cut(s)	461, 492, 691, 746, 799
NlaIII	CATG	4 cut(s)	148, 247, 637, 668
NlaIV	GGNNCC	3 cut(s)	58, 137, 369
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	637
PaeI	GCATGC	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	4 cut(s)	420, 429, 432, 623
Ple19I	CGATCG	1 cut(s)	464
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	58, 137, 369
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	135, 136
PsrI	GAACNNNNNNTAC	2 cut(s)	569, 601
PvuI	CGATCG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	432
Sau3AI	GATC	5 cut(s)	461, 492, 691, 746, 799
Sau96I	GGNCC	2 cut(s)	135, 136
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	134, 324, 372
SduI	GDGCHC	4 cut(s)	139, 154, 372, 432
SfaNI	GCATC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	637
Sse9I	AATT	4 cut(s)	342, 659, 714, 850
SspMI	CTAG	1 cut(s)	731
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	132, 322, 370
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	502, 724, 754
TaiI	ACGT	3 cut(s)	417, 540, 582
TaqI	TCGA	4 cut(s)	269, 432, 460, 697
TasI	AATT	4 cut(s)	342, 659, 714, 850
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	9 cut(s)	52, 261, 264, 299, 352, 355, 387, 509, 812
TscAI	CASTG	3 cut(s)	505, 661, 757
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	4 cut(s)	46, 210, 381, 387
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	17, 82
TspGWI	ACGGA	2 cut(s)	12, 290
TspRI	CASTG	3 cut(s)	505, 661, 757
XapI	RAATTY	2 cut(s)	342, 714
XbaI	TCTAGA	1 cut(s)	730
XceI	RCATGY	1 cut(s)	637
XspI	CTAG	1 cut(s)	731
ZraI	GACGTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.