Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Reverse (-)

29463548 .. 29465249

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATAAGAGCTGTAACTCCTCCGGCGATTCCTCCGCCGTATCCGCCTCTGCAACGAGTAGTACCGGTAACAATACAACGAACAGAGATCATTACCTGAGACAACTCAATAAGCTGTCTCATAAGATATCAAAACCGACGAACTCTTCCTCCTCCGTCTCCGTCGCGAATCGTGAAATTGATCTTCCACCTCCTCCACCGCTGCAAATCAATCAAGGGAATCTCCATCAACATCAACCTCCTGTTTACAATATCAACAAGAACGATTTCAGAGATGTTGTTCAGAAACTAACCGGTTCACCTGCACATGAACGGATCTCTGCTCCGCCGCAACAACCGATTCATCACCCTAAACCTCAACAGAGTTCGCGTCTACATAGGATCCGTCCTCCTCCTTTGGTTCACGTTATCAATCGTCCTCCTGGTTTGCTAAATGACGCACTTATCCCTCAAGGTTCTCATCACATGAATCAAAACTGGACTGGCGTTGGATTTAACCTTCGACCAACGGCGCCGCTTTCTCCTCTCCCGCCGTTACCACCGGTTCACGCGGCGGCGGAATCACCGGTCTCTTCGTACATGCGGTATCTCCAGAACTCGATGTTCGCAATCGATTCGAATCGGAAAGAGTTCTCTGGATTATCTCCGTTAGCTCCTTTGGTCTCACCTCGTTGGTACCAACAACAGGAAAACGCTCCACCATCGCAGCATAACAGTTTTCCACCACCACATCCTCCTCCTCCTTCCTCTGCTGTTTCGCAGACGGTGCCGACATCGATTCCGGCGCCTCCACTGTTTGGATGTTCAAGTTCGCCTAAATCTCCGTACGGATTACTCTCACCGAGCATACTTTTATCGCCATCGTCAGGTCAATTAGGGTTCCCTGTATCTCCGACGACGGTGCCGCTTCCTAGCCCTAAATACAAAGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

311

Amino Acids

33.58

Weight (kDa)

9.91

Isoelectric Point (pI)

79.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	78 - 103	2.3e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	675
AccB1I	GGYRCC	5 cut(s)	511, 675, 766, 784, 901
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	373
AccII	CGCG	3 cut(s)	167, 370, 551
AclWI	GGATC	3 cut(s)	323, 376, 389
AcyI	GRCGYC	2 cut(s)	512, 785
AfaI	GTAC	4 cut(s)	64, 578, 677, 827
AfiI	CCNNNNNNNGG	3 cut(s)	685, 797, 866
AgeI	ACCGGT	4 cut(s)	65, 293, 541, 565
AgsI	TTSAA	1 cut(s)	807
AjnI	CCWGG	1 cut(s)	421
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	3 cut(s)	12, 115, 653
AluI	AGCT	3 cut(s)	12, 115, 653
Alw26I	GTCTC	5 cut(s)	94, 123, 163, 574, 667
AlwI	GGATC	3 cut(s)	323, 376, 389
ApeKI	GCWGC	2 cut(s)	202, 706
AsiGI	ACCGGT	4 cut(s)	65, 293, 541, 565
Asp700I	GAANNNNTTC	2 cut(s)	266, 629
Asp718I	GGTACC	1 cut(s)	675
AspLEI	GCGC	2 cut(s)	514, 787
AsuHPI	GGTGA	5 cut(s)	291, 338, 555, 657, 831
AsuII	TTCGAA	1 cut(s)	617
BamHI	GGATCC	1 cut(s)	381
BanI	GGYRCC	5 cut(s)	511, 675, 766, 784, 901
BbvI	GCAGC	2 cut(s)	189, 718
BccI	CCATC	3 cut(s)	234, 709, 868
BceAI	ACGGC	3 cut(s)	23, 517, 525
BcgI	CGANNNNNNTGC	4 cut(s)	597, 631, 883, 917
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	52
BcoDI	GTCTC	5 cut(s)	94, 123, 163, 574, 667
BfaI	CTAG	1 cut(s)	912
BfoI	RGCGCY	2 cut(s)	515, 788
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	7 cut(s)	203, 329, 515, 552, 555, 707, 905
BlsI	GCNGC	7 cut(s)	204, 330, 516, 553, 556, 708, 906
Bme1390I	CCNGG	1 cut(s)	423
BmiI	GGNNCC	7 cut(s)	383, 513, 677, 768, 786, 881, 903
BmrFI	CCNGG	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	575
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	435
Bsa29I	ATCGAT	2 cut(s)	612, 776
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	2 cut(s)	512, 785
BsaI	GGTCTC	2 cut(s)	574, 667
BsaWI	WCCGGW	4 cut(s)	65, 293, 541, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	685, 797, 866
Bse118I	RCCGGY	4 cut(s)	65, 293, 541, 565
Bse1I	ACTGG	2 cut(s)	482, 487
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	2 cut(s)	612, 776
BseGI	GGATG	2 cut(s)	730, 806
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	3 cut(s)	685, 797, 866
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	482, 487
BseRI	GAGGAG	7 cut(s)	10, 142, 183, 381, 513, 726, 729
BseXI	GCAGC	2 cut(s)	189, 718
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	3 cut(s)	167, 370, 551
BshNI	GGYRCC	5 cut(s)	511, 675, 766, 784, 901
BshTI	ACCGGT	4 cut(s)	65, 293, 541, 565
BshVI	ATCGAT	2 cut(s)	612, 776
BsiSI	CCGG	6 cut(s)	24, 66, 294, 542, 566, 782
BsiWI	CGTACG	1 cut(s)	825
BslI	CCNNNNNNNGG	3 cut(s)	685, 797, 866
BsmAI	GTCTC	5 cut(s)	94, 123, 163, 574, 667
BsmBI	CGTCTC	1 cut(s)	163
Bso31I	GGTCTC	2 cut(s)	574, 667
Bsp119I	TTCGAA	1 cut(s)	617
Bsp143I	GATC	4 cut(s)	88, 181, 315, 381
Bsp68I	TCGCGA	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	2 cut(s)	612, 776
BspFNI	CGCG	3 cut(s)	167, 370, 551
BspLI	GGNNCC	7 cut(s)	383, 513, 677, 768, 786, 881, 903
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	3 cut(s)	323, 376, 389
BspT104I	TTCGAA	1 cut(s)	617
BspT107I	GGYRCC	5 cut(s)	511, 675, 766, 784, 901
BspTNI	GGTCTC	2 cut(s)	574, 667
BsrFI	RCCGGY	4 cut(s)	65, 293, 541, 565
BsrI	ACTGG	2 cut(s)	482, 487
BssAI	RCCGGY	4 cut(s)	65, 293, 541, 565
BssMI	GATC	4 cut(s)	88, 181, 315, 381
BssNI	GRCGYC	2 cut(s)	512, 785
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	4 cut(s)	716, 766, 795, 901
Bst6I	CTCTTC	2 cut(s)	151, 577
BstACI	GRCGYC	2 cut(s)	512, 785
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	617
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	730, 806
BstFNI	CGCG	3 cut(s)	167, 370, 551
BstH2I	RGCGCY	2 cut(s)	515, 788
BstHHI	GCGC	2 cut(s)	514, 787
BstKTI	GATC	4 cut(s)	91, 184, 318, 384
BstMAI	GTCTC	5 cut(s)	94, 123, 163, 574, 667
BstMBI	GATC	4 cut(s)	88, 181, 315, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 766
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	421
BstUI	CGCG	3 cut(s)	167, 370, 551
BstV1I	GCAGC	2 cut(s)	189, 718
BstX2I	RGATCY	2 cut(s)	315, 381
BstYI	RGATCY	2 cut(s)	315, 381
Bsu15I	ATCGAT	2 cut(s)	612, 776
BsuI	GTATCC	1 cut(s)	52
BsuTUI	ATCGAT	2 cut(s)	612, 776
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	730, 806
BtsIMutI	CAGTG	1 cut(s)	791
BtuMI	TCGCGA	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	310
CfoI	GCGC	2 cut(s)	514, 787
Cfr10I	RCCGGY	4 cut(s)	65, 293, 541, 565
ClaI	ATCGAT	2 cut(s)	612, 776
CseI	GACGC	2 cut(s)	359, 446
Csp6I	GTAC	4 cut(s)	63, 577, 676, 826
CspAI	ACCGGT	4 cut(s)	65, 293, 541, 565
CviAII	CATG	3 cut(s)	308, 466, 580
CviJI	RGCY	4 cut(s)	12, 115, 653, 915
CviKI_1	RGCY	4 cut(s)	12, 115, 653, 915
CviQI	GTAC	4 cut(s)	63, 577, 676, 826
DdeI	CTNAG	1 cut(s)	98
DinI	GGCGCC	2 cut(s)	513, 786
DpnI	GATC	4 cut(s)	90, 183, 317, 383
DpnII	GATC	4 cut(s)	88, 181, 315, 381
Eam1104I	CTCTTC	2 cut(s)	151, 577
EarI	CTCTTC	2 cut(s)	151, 577
EciI	GGCGGA	4 cut(s)	25, 34, 315, 572
Eco31I	GGTCTC	2 cut(s)	574, 667
Eco32I	GATATC	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	129
EgeI	GGCGCC	2 cut(s)	513, 786
EheI	GGCGCC	2 cut(s)	513, 786
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	311, 469, 583
FaiI	YATR	7 cut(s)	123, 309, 378, 467, 581, 711, 848
FatI	CATG	3 cut(s)	307, 465, 579
FauI	CCCGC	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	7 cut(s)	203, 329, 515, 552, 555, 707, 905
FokI	GGATG	2 cut(s)	717, 813
Fsp4HI	GCNGC	7 cut(s)	203, 329, 515, 552, 555, 707, 905
FspBI	CTAG	1 cut(s)	912
GlaI	GCGC	2 cut(s)	513, 786
GluI	GCNGC	7 cut(s)	203, 329, 515, 552, 555, 707, 905
GsuI	CTGGAG	1 cut(s)	575
HaeII	RGCGCY	2 cut(s)	515, 788
HapII	CCGG	6 cut(s)	24, 66, 294, 542, 566, 782
HgaI	GACGC	2 cut(s)	359, 446
HhaI	GCGC	2 cut(s)	514, 787
Hin1I	GRCGYC	2 cut(s)	512, 785
Hin1II	CATG	3 cut(s)	311, 469, 583
Hin6I	GCGC	2 cut(s)	512, 785
HinP1I	GCGC	2 cut(s)	512, 785
HinfI	GANTC	9 cut(s)	29, 169, 220, 340, 469, 560, 614, 619, 778
HpaII	CCGG	6 cut(s)	24, 66, 294, 542, 566, 782
HphI	GGTGA	5 cut(s)	291, 338, 555, 657, 831
Hpy166II	GTNNAC	5 cut(s)	247, 299, 374, 403, 547
Hpy188I	TCNGA	4 cut(s)	272, 285, 624, 894
Hpy188III	TCNNGA	4 cut(s)	166, 173, 592, 636
Hpy8I	GTNNAC	5 cut(s)	247, 299, 374, 403, 547
Hpy99I	CGWCG	4 cut(s)	142, 167, 898, 901
HpyAV	CCTTC	2 cut(s)	509, 753
HpyCH4III	ACNGT	4 cut(s)	716, 766, 795, 901
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	53, 205, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 766
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	2 cut(s)	512, 785
Hsp92II	CATG	3 cut(s)	311, 469, 583
HspAI	GCGC	2 cut(s)	512, 785
KasI	GGCGCC	2 cut(s)	511, 784
KpnI	GGTACC	1 cut(s)	679
Kzo9I	GATC	4 cut(s)	88, 181, 315, 381
LmnI	GCTCC	3 cut(s)	328, 658, 700
Lsp1109I	GCAGC	2 cut(s)	189, 718
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	14, 68, 534
MalI	GATC	4 cut(s)	90, 183, 317, 383
MboI	GATC	4 cut(s)	88, 181, 315, 381
MboII	GAAGA	3 cut(s)	138, 176, 564
MflI	RGATCY	2 cut(s)	315, 381
MluCI	AATT	2 cut(s)	177, 872
Mly113I	GGCGCC	2 cut(s)	512, 785
MmeI	TCCRAC	2 cut(s)	469, 917
MroXI	GAANNNNTTC	2 cut(s)	266, 629
MseI	TTAA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	6 cut(s)	24, 66, 294, 542, 566, 782
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	3 cut(s)	167, 370, 551
MwoI	GCNNNNNNNGC	2 cut(s)	44, 766
NarI	GGCGCC	2 cut(s)	512, 785
NdeII	GATC	4 cut(s)	88, 181, 315, 381
NlaIII	CATG	3 cut(s)	311, 469, 583
NlaIV	GGNNCC	7 cut(s)	383, 513, 677, 768, 786, 881, 903
NruI	TCGCGA	1 cut(s)	167
NspI	RCATGY	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	266, 629
PfeI	GAWTC	9 cut(s)	29, 169, 220, 340, 469, 560, 614, 619, 778
Pfl23II	CGTACG	1 cut(s)	825
PflMI	CCANNNNNTGG	1 cut(s)	797
PinAI	ACCGGT	4 cut(s)	65, 293, 541, 565
PkrI	GCNGC	7 cut(s)	204, 330, 516, 553, 556, 708, 906
PluTI	GGCGCC	2 cut(s)	515, 788
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspLI	CGTACG	1 cut(s)	825
PspN4I	GGNNCC	7 cut(s)	383, 513, 677, 768, 786, 881, 903
PsuI	RGATCY	2 cut(s)	315, 381
RruI	TCGCGA	1 cut(s)	167
RsaI	GTAC	4 cut(s)	64, 578, 677, 827
RsaNI	GTAC	4 cut(s)	63, 577, 676, 826
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	7 cut(s)	203, 329, 515, 552, 555, 707, 905
Sau3AI	GATC	4 cut(s)	88, 181, 315, 381
ScrFI	CCNGG	1 cut(s)	423
SfoI	GGCGCC	2 cut(s)	513, 786
SfuI	TTCGAA	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	2 cut(s)	177, 872
SspDI	GGCGCC	2 cut(s)	511, 784
SspMI	CTAG	1 cut(s)	912
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	4 cut(s)	716, 766, 795, 901
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	5 cut(s)	502, 599, 612, 617, 776
TasI	AATT	2 cut(s)	177, 872
TauI	GCSGC	5 cut(s)	331, 517, 554, 557, 907
TfiI	GAWTC	9 cut(s)	29, 169, 220, 340, 469, 560, 614, 619, 778
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	798
TseI	GCWGC	2 cut(s)	202, 706
TspDTI	ATGAA	3 cut(s)	324, 332, 482
TspGWI	ACGGA	7 cut(s)	145, 151, 328, 374, 636, 813, 843
TspRI	CASTG	1 cut(s)	798
Van91I	CCANNNNNTGG	1 cut(s)	797
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	373
XmnI	GAANNNNTTC	2 cut(s)	266, 629
XspI	CTAG	1 cut(s)	912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.