Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Reverse (-)

32894704 .. 32895900

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGTCCAGTCCGCACTTGTCCCTACTCGCCGACTGTATTATCCTCATTTTTCATTGCCCACCACTCTCAGGCCAACAACCCCCTTCTTTCTTTCCCGTCAGATATTTTCAGATCTACTCACTCAGACACTGAGAGGAGAGAGGGAGAAGGAGAGAGAGAGTCTGCTGTGTTTGTATGTGATTTTGTGTTGCTTTTTTGTTATGGATAAAATCTGTCCCTCTTCAACTACTGATTCAGCTGCTCTCACTACTGCGGCTTCCAGTGGCGGCGGCGGCGGCGGCAGCTCCACCACCACCACCACAGACAACTACCTCAAACACCTCAACAAGCTTTCCCACAAGATCTCAAAACCCCCCACCACCACCAACACCCACAACACCTTCCTTAAAAAACCCAACTTTGAAAACTCACCGCCGCCTCCTCCTCCGCTTCCTCTTCCTCCCCAACACCAGCAGCAGCAGCAGCAGCATCAGCACCAGCCGCCGGTTTACAACATCAACAAAAACGACTTCCGCGACGTCGTTCAGAAGCTCACCGGCTCTCCCGCCCACGACCGCTTCTCCAACCCCCAGCCGCCGGTTCACCTGCCCAAGCCACAAATCAGCTCCCGCCTCCAGCGCATCCGCCCTCCCCCTCTCGCGCAGCTTAACAACCGACCCCCTCCCTCGTTAGAATGCGCCGCTCCACCCCCAAACACCAACAATCCAATCATCCCACCCATGGGATCCGCCGCCGCTCACTTCAATTCCATCGGACGGTCCACAACCCCTCTCTCGCCTCTCCCTCCTTTCCCAACCGTACACGCGGCGGCTGAATCCCCCGTCTCAGCCTACATGCGGTACCTCCACAACTCAATCTCAGCCGTCGATTCTAACAACCAGAAGTTCTCGGGATTCTCGCCTCTGGCCCCGCTTGTCTCGCCCCGTTGGACCAATCTGACGCCGCCTCCGCAGCAGAATCAGCAGGTTGCGCCACCGCAGCAGGGGATAGGTACATCAGCGAATCTACAACAGCAGACAACGACGGCGATAGCGTCACAGCCGCAGTTCGCGATGCCTCCATCGCCGCTTCCTTTCGGGTGCTTGAGTTCGCCGCGATCGCCGTACCCATCGCTTTCCCCAAATCAATTAGGGTTTCCTCAGCTGCCGCTGTCGCCGACAGTTCCTGTATCAAGCCCTAGGTGGAGAAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

399

Amino Acids

43.52

Weight (kDa)

9.95

Isoelectric Point (pI)

77.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	159 - 185	2.7e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	594
AatII	GACGTC	1 cut(s)	522
Acc36I	ACCTGC	2 cut(s)	594, 955
Acc65I	GGTACC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	840
AccBSI	CCGCTC	2 cut(s)	683, 737
AccII	CGCG	5 cut(s)	516, 641, 806, 1052, 1096
AclWI	GGATC	2 cut(s)	720, 733
AcyI	GRCGYC	2 cut(s)	519, 941
AfaI	GTAC	4 cut(s)	801, 842, 994, 1106
AfiI	CCNNNNNNNGG	8 cut(s)	69, 484, 577, 721, 722, 756, 837, 983
AgsI	TTSAA	3 cut(s)	225, 404, 745
AluBI	AGCT	7 cut(s)	239, 285, 331, 532, 606, 646, 1144
AluI	AGCT	7 cut(s)	239, 285, 331, 532, 606, 646, 1144
Alw26I	GTCTC	2 cut(s)	829, 922
AlwI	GGATC	2 cut(s)	720, 733
AlwNI	CAGNNNCTG	2 cut(s)	130, 1166
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	2 cut(s)	71, 906
AsiSI	GCGATCGC	1 cut(s)	1100
Asp718I	GGTACC	1 cut(s)	840
AspA2I	CCTAGG	1 cut(s)	1178
AspLEI	GCGC	4 cut(s)	621, 643, 680, 973
AspS9I	GGNCC	4 cut(s)	4, 759, 907, 930
AsuHPI	GGTGA	3 cut(s)	402, 526, 575
AvaI	CYCGRG	1 cut(s)	889
AvaII	GGWCC	3 cut(s)	4, 759, 930
AvrII	CCTAGG	1 cut(s)	1178
BamHI	GGATCC	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	840
BbvCI	CCTCAGC	1 cut(s)	1140
BccI	CCATC	3 cut(s)	758, 1069, 1117
BceAI	ACGGC	3 cut(s)	848, 1041, 1087
BcoDI	GTCTC	2 cut(s)	829, 922
BfaI	CTAG	1 cut(s)	1179
BfuAI	ACCTGC	2 cut(s)	594, 955
BglII	AGATCT	2 cut(s)	112, 342
BlnI	CCTAGG	1 cut(s)	1178
Bme18I	GGWCC	3 cut(s)	4, 759, 930
BmeT110I	CYCGRG	1 cut(s)	889
BmgT120I	GGNCC	4 cut(s)	4, 759, 907, 930
BmiI	GGNNCC	3 cut(s)	727, 842, 909
BmsI	GCATC	3 cut(s)	478, 630, 1044
BpmI	CTGGAG	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	1140
BpuEI	CTTGAG	1 cut(s)	1105
BsaHI	GRCGYC	2 cut(s)	519, 941
BsaJI	CCNNGG	2 cut(s)	720, 1178
BsaXI	ACNNNNNCTCC	6 cut(s)	526, 545, 556, 575, 931, 961
Bsc4I	CCNNNNNNNGG	8 cut(s)	69, 484, 577, 721, 722, 756, 837, 983
Bse118I	RCCGGY	3 cut(s)	484, 536, 577
Bse1I	ACTGG	2 cut(s)	7, 261
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	720, 1178
BseGI	GGATG	2 cut(s)	621, 711
BseLI	CCNNNNNNNGG	8 cut(s)	69, 484, 577, 721, 722, 756, 837, 983
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	6 cut(s)	82, 122, 137, 840, 873, 1154
BseNI	ACTGG	2 cut(s)	7, 261
BseRI	GAGGAG	3 cut(s)	150, 411, 414
BseYI	CCCAGC	1 cut(s)	570
Bsh1236I	CGCG	5 cut(s)	516, 641, 806, 1052, 1096
Bsh1285I	CGRYCG	2 cut(s)	556, 1100
BshFI	GGCC	2 cut(s)	73, 908
BshNI	GGYRCC	1 cut(s)	840
BsiEI	CGRYCG	2 cut(s)	556, 1100
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	3 cut(s)	485, 537, 578
BslFI	GGGAC	2 cut(s)	5, 201
BslI	CCNNNNNNNGG	8 cut(s)	69, 484, 577, 721, 722, 756, 837, 983
BsmAI	GTCTC	2 cut(s)	829, 922
BsmBI	CGTCTC	1 cut(s)	829
BsmFI	GGGAC	2 cut(s)	5, 201
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	73, 908
BsoBI	CYCGRG	1 cut(s)	889
Bsp143I	GATC	4 cut(s)	112, 342, 725, 1097
Bsp19I	CCATGG	1 cut(s)	720
Bsp68I	TCGCGA	1 cut(s)	1052
BspANI	GGCC	2 cut(s)	73, 908
BspCNI	CTCAG	6 cut(s)	81, 123, 136, 839, 872, 1153
BspFNI	CGCG	5 cut(s)	516, 641, 806, 1052, 1096
BspLI	GGNNCC	3 cut(s)	727, 842, 909
BspMI	ACCTGC	2 cut(s)	594, 955
BspPI	GGATC	2 cut(s)	720, 733
BspT107I	GGYRCC	1 cut(s)	840
BsrBI	CCGCTC	2 cut(s)	683, 737
BsrDI	GCAATG	1 cut(s)	53
BsrFI	RCCGGY	3 cut(s)	484, 536, 577
BsrI	ACTGG	2 cut(s)	7, 261
BssAI	RCCGGY	3 cut(s)	484, 536, 577
BssECI	CCNNGG	2 cut(s)	720, 1178
BssMI	GATC	4 cut(s)	112, 342, 725, 1097
BssNI	GRCGYC	2 cut(s)	519, 941
BssT1I	CCWWGG	2 cut(s)	720, 1178
Bst4CI	ACNGT	4 cut(s)	36, 759, 799, 1162
Bst6I	CTCTTC	2 cut(s)	226, 441
BstACI	GRCGYC	2 cut(s)	519, 941
BstDEI	CTNAG	6 cut(s)	68, 123, 131, 826, 859, 1140
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	2 cut(s)	621, 711
BstFNI	CGCG	5 cut(s)	516, 641, 806, 1052, 1096
BstHHI	GCGC	4 cut(s)	621, 643, 680, 973
BstKTI	GATC	4 cut(s)	115, 345, 728, 1100
BstMAI	GTCTC	2 cut(s)	829, 922
BstMBI	GATC	4 cut(s)	112, 342, 725, 1097
BstMCI	CGRYCG	2 cut(s)	556, 1100
BstNSI	RCATGY	1 cut(s)	838
BstUI	CGCG	5 cut(s)	516, 641, 806, 1052, 1096
BstX2I	RGATCY	3 cut(s)	112, 342, 725
BstYI	RGATCY	3 cut(s)	112, 342, 725
BsuRI	GGCC	2 cut(s)	73, 908
BtgI	CCRYGG	1 cut(s)	720
BtgZI	GCGATG	3 cut(s)	1047, 1067, 1095
BtsCI	GGATG	2 cut(s)	621, 711
BtsIMutI	CAGTG	2 cut(s)	128, 268
BtuMI	TCGCGA	1 cut(s)	1052
BveI	ACCTGC	2 cut(s)	594, 955
CaiI	CAGNNNCTG	2 cut(s)	130, 1166
CfoI	GCGC	4 cut(s)	621, 643, 680, 973
Cfr10I	RCCGGY	3 cut(s)	484, 536, 577
Cfr13I	GGNCC	4 cut(s)	4, 759, 907, 930
CseI	GACGC	2 cut(s)	949, 1023
Csp6I	GTAC	4 cut(s)	800, 841, 993, 1105
CviAII	CATG	2 cut(s)	721, 835
CviQI	GTAC	4 cut(s)	800, 841, 993, 1105
DdeI	CTNAG	6 cut(s)	68, 123, 131, 826, 859, 1140
DpnI	GATC	4 cut(s)	114, 344, 727, 1099
DpnII	GATC	4 cut(s)	112, 342, 725, 1097
Eam1104I	CTCTTC	2 cut(s)	226, 441
EarI	CTCTTC	2 cut(s)	226, 441
EciI	GGCGGA	2 cut(s)	614, 718
Eco130I	CCWWGG	2 cut(s)	720, 1178
Eco47I	GGWCC	3 cut(s)	4, 759, 930
Eco88I	CYCGRG	1 cut(s)	889
EcoT14I	CCWWGG	2 cut(s)	720, 1178
ErhI	CCWWGG	2 cut(s)	720, 1178
Esp3I	CGTCTC	1 cut(s)	829
FaeI	CATG	2 cut(s)	724, 838
FaiI	YATR	4 cut(s)	177, 203, 722, 836
FaqI	GGGAC	2 cut(s)	5, 201
FatI	CATG	2 cut(s)	720, 834
FauI	CCCGC	3 cut(s)	553, 617, 918
FokI	GGATG	2 cut(s)	608, 698
FspBI	CTAG	1 cut(s)	1179
GlaI	GCGC	4 cut(s)	620, 642, 679, 972
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	2 cut(s)	73, 908
HapII	CCGG	3 cut(s)	485, 537, 578
HgaI	GACGC	2 cut(s)	949, 1023
HhaI	GCGC	4 cut(s)	621, 643, 680, 973
Hin1I	GRCGYC	2 cut(s)	519, 941
Hin1II	CATG	2 cut(s)	724, 838
Hin6I	GCGC	4 cut(s)	619, 641, 678, 971
HinP1I	GCGC	4 cut(s)	619, 641, 678, 971
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	7 cut(s)	160, 233, 815, 869, 894, 958, 1003
HpaII	CCGG	3 cut(s)	485, 537, 578
HphI	GGTGA	3 cut(s)	402, 526, 575
Hpy166II	GTNNAC	4 cut(s)	490, 583, 762, 802
Hpy188I	TCNGA	7 cut(s)	102, 112, 126, 528, 755, 939, 1196
Hpy188III	TCNNGA	2 cut(s)	891, 1051
Hpy8I	GTNNAC	4 cut(s)	490, 583, 762, 802
Hpy99I	CGWCG	4 cut(s)	521, 524, 869, 1027
HpyAV	CCTTC	3 cut(s)	94, 142, 391
HpyCH4III	ACNGT	4 cut(s)	36, 759, 799, 1162
HpyCH4IV	ACGT	1 cut(s)	519
HpyF3I	CTNAG	6 cut(s)	68, 123, 131, 826, 859, 1140
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	2 cut(s)	519, 941
Hsp92II	CATG	2 cut(s)	724, 838
HspAI	GCGC	4 cut(s)	619, 641, 678, 971
KpnI	GGTACC	1 cut(s)	844
Kzo9I	GATC	4 cut(s)	112, 342, 725, 1097
LmnI	GCTCC	3 cut(s)	290, 611, 688
LweI	GCATC	3 cut(s)	478, 630, 1044
MaeI	CTAG	1 cut(s)	1179
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	1035
MalI	GATC	4 cut(s)	114, 344, 727, 1099
MbiI	CCGCTC	2 cut(s)	683, 737
MboI	GATC	4 cut(s)	112, 342, 725, 1097
MboII	GAAGA	2 cut(s)	213, 428
MflI	RGATCY	3 cut(s)	112, 342, 725
MluCI	AATT	2 cut(s)	745, 1127
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	588, 908
MseI	TTAA	2 cut(s)	387, 648
MspA1I	CMGCKG	3 cut(s)	239, 1144, 1150
MspI	CCGG	3 cut(s)	485, 537, 578
Mva1269I	GAATGC	1 cut(s)	680
MvnI	CGCG	5 cut(s)	516, 641, 806, 1052, 1096
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	4 cut(s)	112, 342, 725, 1097
NlaIII	CATG	2 cut(s)	724, 838
NlaIV	GGNNCC	3 cut(s)	727, 842, 909
NmuCI	GTSAC	1 cut(s)	1035
NruI	TCGCGA	1 cut(s)	1052
NspI	RCATGY	1 cut(s)	838
PaqCI	CACCTGC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	2 cut(s)	513, 1031
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	6 cut(s)	233, 815, 869, 894, 958, 1003
Ple19I	CGATCG	1 cut(s)	1100
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	727, 842, 909
PspPI	GGNCC	4 cut(s)	4, 759, 907, 930
PstNI	CAGNNNCTG	2 cut(s)	130, 1166
PsuI	RGATCY	3 cut(s)	112, 342, 725
PvuI	CGATCG	1 cut(s)	1100
PvuII	CAGCTG	2 cut(s)	239, 1144
RgaI	GCGATCGC	1 cut(s)	1100
RruI	TCGCGA	1 cut(s)	1052
RsaI	GTAC	4 cut(s)	801, 842, 994, 1106
RsaNI	GTAC	4 cut(s)	800, 841, 993, 1105
SaqAI	TTAA	2 cut(s)	387, 648
Sau3AI	GATC	4 cut(s)	112, 342, 725, 1097
Sau96I	GGNCC	4 cut(s)	4, 759, 907, 930
SchI	GAGTC	1 cut(s)	169
SfaAI	GCGATCGC	1 cut(s)	1100
SfaNI	GCATC	3 cut(s)	478, 630, 1044
SgfI	GCGATCGC	1 cut(s)	1100
SinI	GGWCC	3 cut(s)	4, 759, 930
SmlI	CTYRAG	1 cut(s)	1084
SmoI	CTYRAG	1 cut(s)	1084
Sse9I	AATT	2 cut(s)	745, 1127
SspMI	CTAG	1 cut(s)	1179
StyI	CCWWGG	2 cut(s)	720, 1178
TaaI	ACNGT	4 cut(s)	36, 759, 799, 1162
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	867
TasI	AATT	2 cut(s)	745, 1127
TfiI	GAWTC	6 cut(s)	233, 815, 869, 894, 958, 1003
Tru1I	TTAA	2 cut(s)	387, 648
Tru9I	TTAA	2 cut(s)	387, 648
TscAI	CASTG	2 cut(s)	135, 268
TseFI	GTSAC	1 cut(s)	1035
Tsp45I	GTSAC	1 cut(s)	1035
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	135, 268
VpaK11BI	GGWCC	3 cut(s)	4, 759, 930
XceI	RCATGY	1 cut(s)	838
XmaJI	CCTAGG	1 cut(s)	1178
XspI	CTAG	1 cut(s)	1179
ZraI	GACGTC	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.