Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Reverse (-)

7448061 .. 7449967

Gene Structure 1907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGCACACACGAAGTAGGTGAATGGACAGGCAAAAACGAAATTGTATCCGTGAAGACAGCAGCAATAGCCGCCACCGCCGTGTTTGACAATTCCAAGCCACCACCACCACACACTCAAAATCTCTCTCAGATCCAAAAAGGGTCTCTGTTTCTCCTTCTGGGTTCTCTAGTTTTTGTTGCCATTATTATGGATAAGACCTCATCTTCTTCTTCTACTGAAAACTCCACTGGTGCCACTAGGGATCAGTACCTGAAACACCTCAACAAGCTTTCCCACAAGATCTCCAAGCCCATACTCCGAAAGCCCAATTTCGACCCGCCTCCTCCTCCTCCGCCTCCCGCTCCGATTCCCAACCCCCAAAACCAAAACCGCCGCGGCGCATTTCGGCGGCGTGATCGGACGGTCCACGGCGCCGCTAGTCAGAATCAGAGCCAGCAGCTTCCTCAGCCGGAGCAGGCTATGGCTCCCTCGTCGGAGCCTCCACAACCTCCACAGGTTGCTTCCTCCCAGCCCCAATTCGCTATGCCACCGTCGCCGCTTCCATTCGGATGCTTGAACTCGCCTCGGTCGCAGTATAATTTGCTTTCCCCGAGTCAGTTAGGGTTTCCTCAGCTCCCTCTGTCGCCAACTGTGCCGGTTCCAAGCCCTAGGTGGAGGGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

223

Amino Acids

24.14

Weight (kDa)

10.28

Isoelectric Point (pI)

79.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 413
AccBSI	CCGCTC	1 cut(s)	344
AccII	CGCG	1 cut(s)	378
AclWI	GGATC	2 cut(s)	127, 252
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	559
AleI	CACNNNNGTG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	271, 442, 616
AluI	AGCT	3 cut(s)	271, 442, 616
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	127, 252
AlwNI	CAGNNNCTG	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	62, 439
AspA2I	CCTAGG	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	383, 416
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	406
AvrII	CCTAGG	1 cut(s)	650
BanI	GGYRCC	2 cut(s)	233, 413
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	2 cut(s)	447, 612
BbvI	GCAGC	2 cut(s)	74, 451
BceAI	ACGGC	2 cut(s)	65, 427
BciVI	GTATCC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	4 cut(s)	170, 240, 420, 651
BfoI	RGCGCY	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	8 cut(s)	63, 72, 376, 379, 392, 417, 440, 539
BlnI	CCTAGG	1 cut(s)	650
BlsI	GCNGC	8 cut(s)	64, 73, 377, 380, 393, 418, 441, 540
Bme18I	GGWCC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	5 cut(s)	235, 415, 468, 480, 642
BmsI	GCATC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	2 cut(s)	447, 612
BsaHI	GRCGYC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	376, 409, 566, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	4 cut(s)	376, 409, 566, 650
BseGI	GGATG	1 cut(s)	557
BseMII	CTCAG	3 cut(s)	143, 461, 626
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	315, 318, 321
BseXI	GCAGC	2 cut(s)	74, 451
BseYI	CCCAGC	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	572
BshNI	GGYRCC	2 cut(s)	233, 413
BsiEI	CGRYCG	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	2 cut(s)	452, 638
BsmAI	GTCTC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	132, 244, 282, 397
BspCNI	CTCAG	3 cut(s)	142, 460, 625
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	5 cut(s)	235, 415, 468, 480, 642
BspPI	GGATC	2 cut(s)	127, 252
BspT107I	GGYRCC	2 cut(s)	233, 413
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	4 cut(s)	376, 409, 566, 650
BssMI	GATC	4 cut(s)	132, 244, 282, 397
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	650
Bst4CI	ACNGT	3 cut(s)	406, 534, 634
BstACI	GRCGYC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	437, 459
BstDEI	CTNAG	3 cut(s)	129, 447, 612
BstDSI	CCRYGG	2 cut(s)	376, 409
BstF5I	GGATG	1 cut(s)	557
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	383, 416
BstKTI	GATC	4 cut(s)	135, 247, 285, 400
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	132, 244, 282, 397
BstMCI	CGRYCG	1 cut(s)	572
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 71, 77, 448, 535, 571, 634
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	74, 451
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	132, 282
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	2 cut(s)	132, 282
BsuI	GTATCC	1 cut(s)	58
BtgI	CCRYGG	2 cut(s)	376, 409
BtsCI	GGATG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	437, 459
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	2 cut(s)	383, 416
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	1 cut(s)	406
Cfr42I	CCGCGG	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	250
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	129, 447, 612
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	4 cut(s)	134, 246, 284, 399
DpnII	GATC	4 cut(s)	132, 244, 282, 397
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	650
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	650
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	650
FaiI	YATR	5 cut(s)	191, 296, 464, 527, 579
FauI	CCCGC	2 cut(s)	327, 349
Fnu4HI	GCNGC	8 cut(s)	63, 72, 376, 379, 392, 417, 440, 539
FokI	GGATG	1 cut(s)	564
Fsp4HI	GCNGC	8 cut(s)	63, 72, 376, 379, 392, 417, 440, 539
FspBI	CTAG	4 cut(s)	170, 240, 420, 651
GlaI	GCGC	2 cut(s)	382, 415
GluI	GCNGC	8 cut(s)	63, 72, 376, 379, 392, 417, 440, 539
GsaI	CCCAGC	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	417
HapII	CCGG	2 cut(s)	452, 638
HhaI	GCGC	2 cut(s)	383, 416
Hin1I	GRCGYC	1 cut(s)	414
Hin6I	GCGC	2 cut(s)	381, 414
HinP1I	GCGC	2 cut(s)	381, 414
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	349, 427, 595
HpaII	CCGG	2 cut(s)	452, 638
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	8 cut(s)	132, 302, 348, 402, 426, 432, 478, 551
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	2 cut(s)	478, 538
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	3 cut(s)	406, 534, 634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 71, 77, 448, 535, 571, 634
HpyF3I	CTNAG	3 cut(s)	129, 447, 612
Hsp92I	GRCGYC	1 cut(s)	414
HspAI	GCGC	2 cut(s)	381, 414
KasI	GGCGCC	1 cut(s)	413
KspI	CCGCGG	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	132, 244, 282, 397
LmnI	GCTCC	5 cut(s)	349, 454, 472, 478, 621
Lsp1109I	GCAGC	2 cut(s)	74, 451
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	4 cut(s)	170, 240, 420, 651
MalI	GATC	4 cut(s)	134, 246, 284, 399
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	4 cut(s)	132, 244, 282, 397
MboII	GAAGA	4 cut(s)	67, 198, 201, 204
MflI	RGATCY	2 cut(s)	132, 282
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	42, 91, 310, 518, 580
Mly113I	GGCGCC	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	456
MslI	CAYNNNNRTG	3 cut(s)	80, 188, 550
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	2 cut(s)	452, 638
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	7 cut(s)	68, 71, 77, 448, 535, 571, 634
NarI	GGCGCC	1 cut(s)	414
NdeII	GATC	4 cut(s)	132, 244, 282, 397
NlaIV	GGNNCC	5 cut(s)	235, 415, 468, 480, 642
OliI	CACNNNNGTG	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	349, 427
PkrI	GCNGC	8 cut(s)	64, 73, 377, 380, 393, 418, 441, 540
PleI	GAGTC	1 cut(s)	603
PluTI	GGCGCC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	510
PspN4I	GGNNCC	5 cut(s)	235, 415, 468, 480, 642
PspPI	GGNCC	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	132, 282
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	3 cut(s)	80, 188, 550
SacII	CCGCGG	1 cut(s)	379
SatI	GCNGC	8 cut(s)	63, 72, 376, 379, 392, 417, 440, 539
Sau3AI	GATC	4 cut(s)	132, 244, 282, 397
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	604
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	415
Sfr303I	CCGCGG	1 cut(s)	379
SgrBI	CCGCGG	1 cut(s)	379
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	3 cut(s)	80, 188, 550
Sse9I	AATT	5 cut(s)	42, 91, 310, 518, 580
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	4 cut(s)	170, 240, 420, 651
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	3 cut(s)	406, 534, 634
TaqI	TCGA	1 cut(s)	315
TaqII	GACCGA	1 cut(s)	558
TasI	AATT	5 cut(s)	42, 91, 310, 518, 580
TauI	GCSGC	6 cut(s)	74, 378, 381, 394, 419, 541
TfiI	GAWTC	2 cut(s)	349, 427
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	62, 439
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XmaJI	CCTAGG	1 cut(s)	650
XspI	CTAG	4 cut(s)	170, 240, 420, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.