Rmu_co8298747.1_g000001

VQ motif

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8298747.1
Physical Location & Seq
Forward (+)
1 .. 889
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8298747.1_g000001.1.cds

Sequence Viewer

Length: 889 bp
cctagatcatcatcatcatccccatatccccctcctccaggccaccaccacacactcaaatctctctcagatccaaaaaggttcctgtttcttcttctgggttctctagtttttgttgccattattatggataagacctcatcttcttcttctactgaaaactccactggtgccactagggatcagtacctgaaacacctcaacaagctttcccacaagatctccaagcccacaatccgaaaacccaatttcgacccgcctcctcctcctcctcctccgcctcccgctccgattcccaacccccaaaaccaaaacgcaccgcttcagctccaatcctctgcttcgcagcctcagcagccgcccaatcagcaccagcctccggtctacaacatcaacaagaacgatttcagggacgtggttcagaagcttaccggttcgccggcccacacgccggaccggttcgcgactcctccgccgattcacccgcccaaaacccagagctccaggctccagcgcatccgacctccgccgctggcccagctcgccgcccggccgccttctcttctcgacggcgccgtttcggctcagccgaacaacaccaacaacaacaaccctctcattccgcccatgggaaccgccgcggctcatttcggcggcgtgatcggacggtccacggcgccgctgtctcctctgcctccttttccgaccgtccacgcggcggcggagtcgccggtctcggcctacatgaggttcctccacaactcgctctccgccggcgattctaatcagaacatgaaccagaagcagcagcatttctctggattttctcccttggctccactcgtctcacctcgctggaccaacctgacgccaccgcaaccggagcaga

Protein Analysis

296

Amino Acids

32.0

Weight (kDa)

10.43

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 170, 572, 676
AccBSI CCGCTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 384
AccII CGCG 3 cut(s) 464, 641, 716
AclWI GGATC 2 cut(s) 65, 189
AcoI YGGCCR 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 3 cut(s) 573, 677, 869
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 6 cut(s) 38, 379, 451, 629, 718, 747
AgeI ACCGGT 2 cut(s) 431, 456
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 2 cut(s) 37, 503
AluBI AGCT 5 cut(s) 208, 328, 427, 501, 541
AluI AGCT 5 cut(s) 208, 328, 427, 501, 541
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 3 cut(s) 690, 739, 850
AlwI GGATC 2 cut(s) 65, 189
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 5 cut(s) 40, 441, 534, 551, 738
ApeKI GCWGC 4 cut(s) 346, 355, 805, 808
AsiGI ACCGGT 2 cut(s) 431, 456
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 3 cut(s) 516, 575, 679
AspS9I GGNCC 5 cut(s) 442, 454, 535, 669, 858
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 473, 840
AvaII GGWCC 3 cut(s) 454, 669, 858
BanI GGYRCC 3 cut(s) 170, 572, 676
BanII GRGCYC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 503
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 358, 367, 817, 820
BceAI ACGGC 3 cut(s) 560, 586, 690
BciT130I CCWGG 2 cut(s) 39, 505
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 3 cut(s) 690, 739, 850
BfaI CTAG 3 cut(s) 3, 107, 177
BfoI RGCGCY 2 cut(s) 576, 680
BglI GCCNNNNNGGC 1 cut(s) 581
BglII AGATCT 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 585
Bme1390I CCNGG 3 cut(s) 39, 505, 550
Bme18I GGWCC 3 cut(s) 454, 669, 858
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 5 cut(s) 442, 454, 535, 669, 858
BmiI GGNNCC 8 cut(s) 83, 172, 509, 574, 634, 678, 752, 837
BmrFI CCNGG 3 cut(s) 39, 505, 550
BmsI GCATC 1 cut(s) 525
BpmI CTGGAG 3 cut(s) 21, 487, 494
Bpu10I CCTNAGC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 550
BsaBI GATNNNNATC 2 cut(s) 10, 783
BsaHI GRCGYC 3 cut(s) 573, 677, 869
BsaI GGTCTC 1 cut(s) 739
BsaJI CCNNGG 4 cut(s) 627, 639, 672, 831
BsaWI WCCGGW 4 cut(s) 379, 431, 456, 880
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 752, 782
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 379, 451, 629, 718, 747
Bse118I RCCGGY 5 cut(s) 431, 439, 456, 730, 773
Bse1I ACTGG 1 cut(s) 172
Bse8I GATNNNNATC 2 cut(s) 10, 783
BseBI CCWGG 2 cut(s) 39, 505
BseDI CCNNGG 4 cut(s) 627, 639, 672, 831
BseGI GGATG 2 cut(s) 17, 516
BseJI GATNNNNATC 2 cut(s) 10, 783
BseLI CCNNNNNNNGG 6 cut(s) 38, 379, 451, 629, 718, 747
BseMII CTCAG 3 cut(s) 81, 365, 599
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 8 cut(s) 24, 252, 255, 258, 261, 264, 459, 678
BseX3I CGGCCG 1 cut(s) 551
BseXI GCAGC 4 cut(s) 358, 367, 817, 820
BseYI CCCAGC 1 cut(s) 537
Bsh1236I CGCG 3 cut(s) 464, 641, 716
Bsh1285I CGRYCG 2 cut(s) 554, 708
BshFI GGCC 5 cut(s) 42, 443, 536, 553, 740
BshNI GGYRCC 3 cut(s) 170, 572, 676
BshTI ACCGGT 2 cut(s) 431, 456
BsiEI CGRYCG 2 cut(s) 554, 708
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 9 cut(s) 380, 432, 440, 452, 457, 550, 731, 774, 881
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 6 cut(s) 38, 379, 451, 629, 718, 747
BsmAI GTCTC 3 cut(s) 690, 739, 850
BsmBI CGTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 5 cut(s) 42, 443, 536, 553, 740
Bso31I GGTCTC 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 5 cut(s) 5, 70, 181, 219, 660
Bsp1720I GCTNAGC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 627
Bsp68I TCGCGA 1 cut(s) 464
BspANI GGCC 5 cut(s) 42, 443, 536, 553, 740
BspCNI CTCAG 3 cut(s) 80, 364, 598
BspFNI CGCG 3 cut(s) 464, 641, 716
BspLI GGNNCC 8 cut(s) 83, 172, 509, 574, 634, 678, 752, 837
BspPI GGATC 2 cut(s) 65, 189
BspT107I GGYRCC 3 cut(s) 170, 572, 676
BspTNI GGTCTC 1 cut(s) 739
BsrBI CCGCTC 1 cut(s) 287
BsrFI RCCGGY 5 cut(s) 431, 439, 456, 730, 773
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 5 cut(s) 431, 439, 456, 730, 773
BssECI CCNNGG 4 cut(s) 627, 639, 672, 831
BssMI GATC 5 cut(s) 5, 70, 181, 219, 660
BssNI GRCGYC 3 cut(s) 573, 677, 869
BssT1I CCWWGG 2 cut(s) 627, 831
Bst2UI CCWGG 2 cut(s) 39, 505
Bst4CI ACNGT 2 cut(s) 669, 709
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 3 cut(s) 573, 677, 869
BstC8I GCNNGC 4 cut(s) 441, 534, 543, 775
BstDEI CTNAG 3 cut(s) 67, 351, 585
BstDSI CCRYGG 3 cut(s) 627, 639, 672
BstENI CCTNNNNNAGG 2 cut(s) 36, 745
BstF5I GGATG 2 cut(s) 17, 516
BstFNI CGCG 3 cut(s) 464, 641, 716
BstH2I RGCGCY 2 cut(s) 576, 680
BstHHI GCGC 3 cut(s) 516, 575, 679
BstKTI GATC 5 cut(s) 8, 73, 184, 222, 663
BstMAI GTCTC 3 cut(s) 690, 739, 850
BstMBI GATC 5 cut(s) 5, 70, 181, 219, 660
BstMCI CGRYCG 2 cut(s) 554, 708
BstMWI GCNNNNNNNGC 7 cut(s) 352, 355, 367, 538, 542, 581, 883
BstNI CCWGG 2 cut(s) 39, 505
BstSCI CCNGG 3 cut(s) 37, 503, 548
BstUI CGCG 3 cut(s) 464, 641, 716
BstV1I GCAGC 4 cut(s) 358, 367, 817, 820
BstX2I RGATCY 2 cut(s) 70, 219
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 2 cut(s) 70, 219
BstZI CGGCCG 1 cut(s) 551
BsuRI GGCC 5 cut(s) 42, 443, 536, 553, 740
BtgI CCRYGG 3 cut(s) 627, 639, 672
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 17, 516
BtsIMutI CAGTG 1 cut(s) 165
BtuMI TCGCGA 1 cut(s) 464
Cac8I GCNNGC 4 cut(s) 441, 534, 543, 775
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 3 cut(s) 516, 575, 679
Cfr10I RCCGGY 5 cut(s) 431, 439, 456, 730, 773
Cfr13I GGNCC 5 cut(s) 442, 454, 535, 669, 858
Cfr42I CCGCGG 1 cut(s) 642
CpoI CGGWCCG 1 cut(s) 454
CseI GACGC 1 cut(s) 877
Csp6I GTAC 1 cut(s) 187
CspAI ACCGGT 2 cut(s) 431, 456
CspI CGGWCCG 1 cut(s) 454
CviAII CATG 3 cut(s) 628, 745, 793
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 67, 351, 585
DinI GGCGCC 2 cut(s) 574, 678
DpnI GATC 5 cut(s) 7, 72, 183, 221, 662
DpnII GATC 5 cut(s) 5, 70, 181, 219, 660
EaeI YGGCCR 1 cut(s) 551
EagI CGGCCG 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 6 cut(s) 267, 462, 516, 612, 737, 760
Ecl136II GAGCTC 1 cut(s) 501
EclXI CGGCCG 1 cut(s) 551
Eco130I CCWWGG 2 cut(s) 627, 831
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 739
Eco47I GGWCC 3 cut(s) 454, 669, 858
Eco52I CGGCCG 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 501
EcoNI CCTNNNNNAGG 2 cut(s) 36, 745
EcoRII CCWGG 2 cut(s) 37, 503
EcoT14I CCWWGG 2 cut(s) 627, 831
EcoT38I GRGCYC 1 cut(s) 503
EgeI GGCGCC 2 cut(s) 574, 678
EheI GGCGCC 2 cut(s) 574, 678
ErhI CCWWGG 2 cut(s) 627, 831
Esp3I CGTCTC 1 cut(s) 850
FaeI CATG 3 cut(s) 631, 748, 796
FaiI YATR 5 cut(s) 25, 128, 629, 746, 794
FaqI GGGAC 1 cut(s) 425
FatI CATG 3 cut(s) 627, 744, 792
FauI CCCGC 3 cut(s) 264, 292, 492
FblI GTMKAC 1 cut(s) 384
FokI GGATG 2 cut(s) 4, 503
FriOI GRGCYC 1 cut(s) 503
FspBI CTAG 3 cut(s) 3, 107, 177
GlaI GCGC 3 cut(s) 515, 574, 678
GsaI CCCAGC 1 cut(s) 541
GsuI CTGGAG 3 cut(s) 21, 487, 494
HaeII RGCGCY 2 cut(s) 576, 680
HaeIII GGCC 5 cut(s) 42, 443, 536, 553, 740
HapII CCGG 9 cut(s) 380, 432, 440, 452, 457, 550, 731, 774, 881
HgaI GACGC 1 cut(s) 877
HhaI GCGC 3 cut(s) 516, 575, 679
Hin1I GRCGYC 3 cut(s) 573, 677, 869
Hin1II CATG 3 cut(s) 631, 748, 796
Hin6I GCGC 3 cut(s) 514, 573, 677
HinP1I GCGC 3 cut(s) 514, 573, 677
HindIII AAGCTT 2 cut(s) 206, 425
HinfI GANTC 5 cut(s) 292, 466, 478, 725, 779
HpaII CCGG 9 cut(s) 380, 432, 440, 452, 457, 550, 731, 774, 881
HphI GGTGA 2 cut(s) 473, 840
Hpy166II GTNNAC 3 cut(s) 385, 672, 712
Hpy188I TCNGA 8 cut(s) 70, 239, 291, 423, 521, 665, 705, 789
Hpy188III TCNNGA 3 cut(s) 463, 566, 819
Hpy8I GTNNAC 3 cut(s) 385, 672, 712
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 1 cut(s) 567
HpyCH4III ACNGT 2 cut(s) 669, 709
HpyCH4IV ACGT 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 7 cut(s) 352, 355, 367, 538, 542, 581, 883
HpyF3I CTNAG 3 cut(s) 67, 351, 585
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 3 cut(s) 573, 677, 869
Hsp92II CATG 3 cut(s) 631, 748, 796
HspAI GCGC 3 cut(s) 514, 573, 677
KasI GGCGCC 2 cut(s) 572, 676
KroI GCCGGC 2 cut(s) 439, 773
KroNI GCCGGC 2 cut(s) 441, 775
KspI CCGCGG 1 cut(s) 642
Kzo9I GATC 5 cut(s) 5, 70, 181, 219, 660
LmnI GCTCC 6 cut(s) 292, 333, 506, 513, 841, 883
Lsp1109I GCAGC 4 cut(s) 358, 367, 817, 820
LweI GCATC 1 cut(s) 525
MaeI CTAG 3 cut(s) 3, 107, 177
MaeII ACGT 1 cut(s) 414
MalI GATC 5 cut(s) 7, 72, 183, 221, 662
MbiI CCGCTC 1 cut(s) 287
MboI GATC 5 cut(s) 5, 70, 181, 219, 660
MboII GAAGA 6 cut(s) 83, 86, 135, 138, 141, 554
MflI RGATCY 2 cut(s) 70, 219
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 1 cut(s) 247
Mly113I GGCGCC 2 cut(s) 573, 677
MlyI GAGTC 2 cut(s) 460, 734
MmeI TCCRAC 2 cut(s) 544, 728
MreI CGCCGGCG 1 cut(s) 773
MroNI GCCGGC 2 cut(s) 439, 773
MroXI GAANNNNTTC 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 3 cut(s) 532, 641, 682
MspI CCGG 9 cut(s) 380, 432, 440, 452, 457, 550, 731, 774, 881
MspR9I CCNGG 3 cut(s) 39, 505, 550
MvaI CCWGG 2 cut(s) 39, 505
MvnI CGCG 3 cut(s) 464, 641, 716
MwoI GCNNNNNNNGC 7 cut(s) 352, 355, 367, 538, 542, 581, 883
NaeI GCCGGC 2 cut(s) 441, 775
NarI GGCGCC 2 cut(s) 573, 677
NciI CCSGG 1 cut(s) 550
NcoI CCATGG 1 cut(s) 627
NdeII GATC 5 cut(s) 5, 70, 181, 219, 660
NgoMIV GCCGGC 2 cut(s) 439, 773
NlaIII CATG 3 cut(s) 631, 748, 796
NlaIV GGNNCC 8 cut(s) 83, 172, 509, 574, 634, 678, 752, 837
NmeAIII GCCGAG 1 cut(s) 716
NruI TCGCGA 1 cut(s) 464
PcsI WCGNNNNNNNCGW 2 cut(s) 573, 587
PdiI GCCGGC 2 cut(s) 441, 775
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 3 cut(s) 292, 478, 779
PinAI ACCGGT 2 cut(s) 431, 456
PleI GAGTC 2 cut(s) 460, 733
PluTI GGCGCC 2 cut(s) 576, 680
PpsI GAGTC 2 cut(s) 460, 733
Psp124BI GAGCTC 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 37, 503
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 2 cut(s) 37, 503
PspN4I GGNNCC 8 cut(s) 83, 172, 509, 574, 634, 678, 752, 837
PspPI GGNCC 5 cut(s) 442, 454, 535, 669, 858
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 70, 219
RruI TCGCGA 1 cut(s) 464
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 125
Rsr2I CGGWCCG 1 cut(s) 454
RsrII CGGWCCG 1 cut(s) 454
SacI GAGCTC 1 cut(s) 503
SacII CCGCGG 1 cut(s) 642
Sau3AI GATC 5 cut(s) 5, 70, 181, 219, 660
Sau96I GGNCC 5 cut(s) 442, 454, 535, 669, 858
SchI GAGTC 2 cut(s) 460, 734
ScrFI CCNGG 3 cut(s) 39, 505, 550
SduI GDGCHC 1 cut(s) 503
SfaNI GCATC 1 cut(s) 525
SfoI GGCGCC 2 cut(s) 574, 678
Sfr303I CCGCGG 1 cut(s) 642
SgrAI CRCCGGYG 1 cut(s) 773
SgrBI CCGCGG 1 cut(s) 642
SinI GGWCC 3 cut(s) 454, 669, 858
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 1 cut(s) 247
SspDI GGCGCC 2 cut(s) 572, 676
SspMI CTAG 3 cut(s) 3, 107, 177
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 3 cut(s) 37, 503, 548
StyI CCWWGG 2 cut(s) 627, 831
TaaI ACNGT 2 cut(s) 669, 709
TaiI ACGT 1 cut(s) 417
TaqI TCGA 2 cut(s) 252, 567
TasI AATT 1 cut(s) 247
TfiI GAWTC 3 cut(s) 292, 478, 779
TscAI CASTG 1 cut(s) 172
TseI GCWGC 4 cut(s) 346, 355, 805, 808
TspDTI ATGAA 1 cut(s) 809
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 3 cut(s) 454, 669, 858
XagI CCTNNNNNAGG 2 cut(s) 36, 745
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 3 cut(s) 3, 107, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.