Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013152

Physical Location & Seq

Genomic Coordinates Reverse (-)

42787397 .. 42791235

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G522100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATAAAAGCTGTCCATCTTCAACCTCTGACTCTGCTCTGACTTCTGCTACTACCAGCAGCGGTGGTGGCAGCAGCAGCTCCACCAGAGACAGCTACCTCAAACACCTCAACAAGCTTTCTCACAAGATCTCAAAACCCACAACCTCAAACAACAACAACACCTTCCTTAAAAAACCCAACTTTGAAATTCCAACACCTCCTCCTCCTCCTCCTGTTCCTCTTCCTCCACAACCTCAACAGCAACAACAGCAACAGCAACAGCAACATCAGCCTCCGGTGTACAACATCAACAAAAACGACTTCCGCGACGTCGTTCAGAAGCTCACCGGCTCCCCCGCCCACCACGACCGCTTCTCCAACCCGCAGCCGCCATCGGTCCACCCGCCCAAGCCCCAAATTAGCTCCCGGCTCCAGCGCATCCGCCCTCCCCCCCTGGCTCACGTTAGCAACCGCCCCCCTCCCTCGCTAGAATGCGCCGCCCCGCCCACCAACCCCAACGCCATCAACAACTCCATCATTCCACCCAGGGGTTCCGCCGCCGCTCACTTCAACTCCATTGGACGGTCCACAACCCCGCTCTCGCCTCTCCCTCCTTTCCCAACCGTACACGCGGCGGCCGAGTCCCCCGTCTCCGCCTACATGCGGTACCTCCACAACTCAATCTCAGCCGTCGATGCTAACAAAAACCAGGCTTTCTGTGGATTCTCGCCGCTGGCCCCACTCGTGTCGCCGCGCTGGACCAATCAGACGCCGCAGCAGAATCAGCAGGCTGCGCCCCCGCAGCAGGGGATGCTTTCCTCGGCGAGTCAGCAACAACCGCCGGCGACGGCGATAGCGTCACAGCCGCAGTTCACTCTGCCTCCGTCACCGCTTCCGTTTGGGTGCTTGAATTCGCCGCGGTCACCGTACCCTTTGATGTCCCCTAATCAATTAGGGTTTCCTCAGCTTCCGCTCTCGCCGACAGTGCCTGTTCCAAGCCCTAGATGGAGAGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0031323 GO:0031326 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051090 GO:0051171 GO:0051252 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0080134 GO:0098771 GO:1901000 GO:1901001 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

334

Amino Acids

35.91

Weight (kDa)

10.22

Isoelectric Point (pI)

84.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78310
fragaria_vesca	FvH4_5g36700
malus_domestica	MD08G1187500.v1.1 MD15G1373500.v1.1
prunus_persica	Prupe.1G522100_v2.0.a1
pyrus_communis	pycom15g33460
rosa_chinensis	RchiOBHm_Chr7g0242681
rosa_laevigata	RLG00000000888
rosa_multiflora	Rmu_co8298747.1_g000001 Rmu_sc0014793.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222590
rosa_rugosa	Rorug07G0316200
rosa_samantha	Rh7AG471200 Rh7BG441500 Rh7CG488200 Rh7DG456800
rosa_wichuraiana	Rw0G005450 Rw7G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	648
AccBSI	CCGCTC	3 cut(s)	545, 580, 955
AccII	CGCG	4 cut(s)	309, 614, 736, 901
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	189, 892
AcyI	GRCGYC	2 cut(s)	312, 752
AfaI	GTAC	4 cut(s)	284, 609, 650, 911
AfiI	CCNNNNNNNGG	5 cut(s)	530, 564, 645, 787, 788
AgsI	TTSAA	4 cut(s)	24, 188, 553, 892
AjnI	CCWGG	3 cut(s)	435, 527, 690
AluBI	AGCT	7 cut(s)	12, 81, 96, 118, 325, 405, 949
AluI	AGCT	7 cut(s)	12, 81, 96, 118, 325, 405, 949
Alw26I	GTCTC	2 cut(s)	84, 637
AlwNI	CAGNNNCTG	1 cut(s)	971
AoxI	GGCC	2 cut(s)	618, 717
ApeKI	GCWGC	8 cut(s)	60, 72, 75, 78, 367, 757, 773, 784
ApoI	RAATTY	2 cut(s)	189, 892
Asp718I	GGTACC	1 cut(s)	648
AspLEI	GCGC	4 cut(s)	420, 479, 738, 778
AspS9I	GGNCC	4 cut(s)	379, 567, 718, 741
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	3 cut(s)	319, 861, 897
AvaII	GGWCC	3 cut(s)	379, 567, 741
BanI	GGYRCC	1 cut(s)	648
BauI	CACGAG	1 cut(s)	725
BbvCI	CCTCAGC	1 cut(s)	945
BbvI	GCAGC	8 cut(s)	72, 84, 87, 90, 379, 760, 769, 796
BccI	CCATC	5 cut(s)	25, 382, 512, 524, 981
BceAI	ACGGC	2 cut(s)	656, 846
BciT130I	CCWGG	3 cut(s)	437, 529, 692
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	84, 637
BfaI	CTAG	2 cut(s)	470, 984
BglII	AGATCT	1 cut(s)	129
Bme1390I	CCNGG	4 cut(s)	409, 437, 529, 692
Bme18I	GGWCC	3 cut(s)	379, 567, 741
BmgT120I	GGNCC	4 cut(s)	379, 567, 718, 741
BmiI	GGNNCC	5 cut(s)	334, 413, 535, 650, 720
BmrFI	CCNGG	4 cut(s)	409, 437, 529, 692
BmsI	GCATC	3 cut(s)	429, 667, 783
BpmI	CTGGAG	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	945
BpuMI	CCSGG	1 cut(s)	409
BsaHI	GRCGYC	2 cut(s)	312, 752
BsaJI	CCNNGG	5 cut(s)	435, 527, 528, 801, 899
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	8 cut(s)	187, 217, 341, 371, 539, 569, 847, 877
Bsc4I	CCNNNNNNNGG	5 cut(s)	530, 564, 645, 787, 788
Bse118I	RCCGGY	2 cut(s)	329, 823
BseBI	CCWGG	3 cut(s)	437, 529, 692
BseDI	CCNNGG	5 cut(s)	435, 527, 528, 801, 899
BseGI	GGATG	2 cut(s)	420, 798
BseLI	CCNNNNNNNGG	5 cut(s)	530, 564, 645, 787, 788
BseMII	CTCAG	2 cut(s)	681, 959
BseRI	GAGGAG	4 cut(s)	192, 195, 198, 201
BseX3I	CGGCCG	1 cut(s)	618
BseXI	GCAGC	8 cut(s)	72, 84, 87, 90, 379, 760, 769, 796
Bsh1236I	CGCG	4 cut(s)	309, 614, 736, 901
Bsh1285I	CGRYCG	2 cut(s)	352, 621
BshFI	GGCC	2 cut(s)	620, 719
BshNI	GGYRCC	1 cut(s)	648
BsiEI	CGRYCG	2 cut(s)	352, 621
BsiSI	CCGG	4 cut(s)	278, 330, 409, 824
BslFI	GGGAC	2 cut(s)	610, 907
BslI	CCNNNNNNNGG	5 cut(s)	530, 564, 645, 787, 788
BsmAI	GTCTC	2 cut(s)	84, 637
BsmBI	CGTCTC	1 cut(s)	637
BsmFI	GGGAC	2 cut(s)	610, 907
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	620, 719
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	620, 719
BspCNI	CTCAG	2 cut(s)	680, 958
BspFNI	CGCG	4 cut(s)	309, 614, 736, 901
BspLI	GGNNCC	5 cut(s)	334, 413, 535, 650, 720
BspT107I	GGYRCC	1 cut(s)	648
BsrBI	CCGCTC	3 cut(s)	545, 580, 955
BsrFI	RCCGGY	2 cut(s)	329, 823
BsrGI	TGTACA	1 cut(s)	282
BssAI	RCCGGY	2 cut(s)	329, 823
BssECI	CCNNGG	5 cut(s)	435, 527, 528, 801, 899
BssMI	GATC	1 cut(s)	129
BssNI	GRCGYC	2 cut(s)	312, 752
BssSI	CACGAG	1 cut(s)	725
Bst2BI	CACGAG	1 cut(s)	725
Bst2UI	CCWGG	3 cut(s)	437, 529, 692
Bst4CI	ACNGT	4 cut(s)	567, 607, 909, 967
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	2 cut(s)	312, 752
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	3 cut(s)	717, 771, 825
BstDEI	CTNAG	2 cut(s)	667, 945
BstDSI	CCRYGG	1 cut(s)	899
BstEII	GGTNACC	1 cut(s)	903
BstF5I	GGATG	2 cut(s)	420, 798
BstFNI	CGCG	4 cut(s)	309, 614, 736, 901
BstHHI	GCGC	4 cut(s)	420, 479, 738, 778
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	2 cut(s)	84, 637
BstMBI	GATC	1 cut(s)	129
BstMCI	CGRYCG	2 cut(s)	352, 621
BstNI	CCWGG	3 cut(s)	437, 529, 692
BstNSI	RCATGY	1 cut(s)	646
BstPI	GGTNACC	1 cut(s)	903
BstSCI	CCNGG	4 cut(s)	407, 435, 527, 690
BstUI	CGCG	4 cut(s)	309, 614, 736, 901
BstV1I	GCAGC	8 cut(s)	72, 84, 87, 90, 379, 760, 769, 796
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZI	CGGCCG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	620, 719
BtgI	CCRYGG	1 cut(s)	899
BtsCI	GGATG	2 cut(s)	420, 798
BtsIMutI	CAGTG	1 cut(s)	972
Cac8I	GCNNGC	3 cut(s)	717, 771, 825
CaiI	CAGNNNCTG	1 cut(s)	971
CfoI	GCGC	4 cut(s)	420, 479, 738, 778
Cfr10I	RCCGGY	2 cut(s)	329, 823
Cfr13I	GGNCC	4 cut(s)	379, 567, 718, 741
Cfr42I	CCGCGG	1 cut(s)	902
CseI	GACGC	2 cut(s)	760, 828
Csp6I	GTAC	4 cut(s)	283, 608, 649, 910
CviAII	CATG	1 cut(s)	643
CviQI	GTAC	4 cut(s)	283, 608, 649, 910
DdeI	CTNAG	2 cut(s)	667, 945
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	618
EagI	CGGCCG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	3 cut(s)	413, 526, 625
EclXI	CGGCCG	1 cut(s)	618
Eco47I	GGWCC	3 cut(s)	379, 567, 741
Eco52I	CGGCCG	1 cut(s)	618
Eco91I	GGTNACC	1 cut(s)	903
EcoO65I	GGTNACC	1 cut(s)	903
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	3 cut(s)	435, 527, 690
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	1 cut(s)	646
FaiI	YATR	1 cut(s)	644
FaqI	GGGAC	2 cut(s)	610, 907
FatI	CATG	1 cut(s)	642
FauI	CCCGC	6 cut(s)	346, 372, 393, 492, 585, 789
FokI	GGATG	2 cut(s)	407, 805
FspBI	CTAG	2 cut(s)	470, 984
GlaI	GCGC	4 cut(s)	419, 478, 737, 777
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	620, 719
HapII	CCGG	4 cut(s)	278, 330, 409, 824
HgaI	GACGC	2 cut(s)	760, 828
HhaI	GCGC	4 cut(s)	420, 479, 738, 778
Hin1I	GRCGYC	2 cut(s)	312, 752
Hin1II	CATG	1 cut(s)	646
Hin6I	GCGC	4 cut(s)	418, 477, 736, 776
HinP1I	GCGC	4 cut(s)	418, 477, 736, 776
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	5 cut(s)	32, 623, 705, 763, 808
HpaII	CCGG	4 cut(s)	278, 330, 409, 824
HphI	GGTGA	3 cut(s)	319, 861, 897
Hpy166II	GTNNAC	5 cut(s)	283, 382, 570, 610, 855
Hpy188I	TCNGA	4 cut(s)	31, 42, 321, 750
Hpy8I	GTNNAC	5 cut(s)	283, 382, 570, 610, 855
Hpy99I	CGWCG	4 cut(s)	314, 317, 677, 832
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	4 cut(s)	567, 607, 909, 967
HpyCH4IV	ACGT	2 cut(s)	312, 444
HpyF3I	CTNAG	2 cut(s)	667, 945
HpySE526I	ACGT	2 cut(s)	312, 444
Hsp92I	GRCGYC	2 cut(s)	312, 752
Hsp92II	CATG	1 cut(s)	646
HspAI	GCGC	4 cut(s)	418, 477, 736, 776
KpnI	GGTACC	1 cut(s)	652
KroI	GCCGGC	1 cut(s)	823
KroNI	GCCGGC	1 cut(s)	825
KspI	CCGCGG	1 cut(s)	902
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	4 cut(s)	86, 338, 410, 417
Lsp1109I	GCAGC	8 cut(s)	72, 84, 87, 90, 379, 760, 769, 796
LweI	GCATC	3 cut(s)	429, 667, 783
MaeI	CTAG	2 cut(s)	470, 984
MaeII	ACGT	2 cut(s)	312, 444
MaeIII	GTNAC	3 cut(s)	840, 867, 903
MalI	GATC	1 cut(s)	131
MbiI	CCGCTC	3 cut(s)	545, 580, 955
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	12, 215
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	4 cut(s)	189, 399, 892, 932
MlyI	GAGTC	3 cut(s)	26, 632, 817
MmeI	TCCRAC	2 cut(s)	218, 384
MreI	CGCCGGCG	1 cut(s)	823
MroNI	GCCGGC	1 cut(s)	823
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	3 cut(s)	63, 715, 901
MspI	CCGG	4 cut(s)	278, 330, 409, 824
MspR9I	CCNGG	4 cut(s)	409, 437, 529, 692
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	3 cut(s)	437, 529, 692
MvnI	CGCG	4 cut(s)	309, 614, 736, 901
NaeI	GCCGGC	1 cut(s)	825
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	823
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	5 cut(s)	334, 413, 535, 650, 720
NmeAIII	GCCGAG	2 cut(s)	646, 782
NmuCI	GTSAC	3 cut(s)	840, 867, 903
NspI	RCATGY	1 cut(s)	646
PasI	CCCWGGG	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	3 cut(s)	306, 618, 836
PctI	GAATGC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	705, 763
PleI	GAGTC	3 cut(s)	26, 631, 816
PpsI	GAGTC	3 cut(s)	26, 631, 816
Psp6I	CCWGG	3 cut(s)	435, 527, 690
PspEI	GGTNACC	1 cut(s)	903
PspGI	CCWGG	3 cut(s)	435, 527, 690
PspN4I	GGNNCC	5 cut(s)	334, 413, 535, 650, 720
PspPI	GGNCC	4 cut(s)	379, 567, 718, 741
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	4 cut(s)	284, 609, 650, 911
RsaNI	GTAC	4 cut(s)	283, 608, 649, 910
SacII	CCGCGG	1 cut(s)	902
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	4 cut(s)	379, 567, 718, 741
SchI	GAGTC	3 cut(s)	26, 632, 817
ScrFI	CCNGG	4 cut(s)	409, 437, 529, 692
SfaNI	GCATC	3 cut(s)	429, 667, 783
Sfr303I	CCGCGG	1 cut(s)	902
SgrAI	CRCCGGYG	1 cut(s)	823
SgrBI	CCGCGG	1 cut(s)	902
SinI	GGWCC	3 cut(s)	379, 567, 741
Sse9I	AATT	4 cut(s)	189, 399, 892, 932
SspMI	CTAG	2 cut(s)	470, 984
StyD4I	CCNGG	4 cut(s)	407, 435, 527, 690
TaaI	ACNGT	4 cut(s)	567, 607, 909, 967
TaiI	ACGT	2 cut(s)	315, 447
TaqI	TCGA	1 cut(s)	675
TaqII	GACCGA	1 cut(s)	367
TasI	AATT	4 cut(s)	189, 399, 892, 932
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	705, 763
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	972
TseFI	GTSAC	3 cut(s)	840, 867, 903
TseI	GCWGC	8 cut(s)	60, 72, 75, 78, 367, 757, 773, 784
Tsp45I	GTSAC	3 cut(s)	840, 867, 903
TspGWI	ACGGA	2 cut(s)	855, 867
TspRI	CASTG	1 cut(s)	972
VpaK11BI	GGWCC	3 cut(s)	379, 567, 741
XapI	RAATTY	2 cut(s)	189, 892
XceI	RCATGY	1 cut(s)	646
XcmI	CCANNNNNNNNNTGG	2 cut(s)	698, 984
XspI	CTAG	2 cut(s)	470, 984
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.