Rw0G005450

VQ motif

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00219
Physical Location & Seq
Reverse (-)
1131 .. 2156
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005450.1

Sequence Viewer

Length: 1026 bp
ATGGATAAGACCTCATCTTCTTCTTCTACTGAAAACTCCACTGGTGCCACTAGGGATCAGTACCTGAAACACCTCAACAAGCTTTCCCACAAGATCTCCAAGCCCACAATCCGAAAACCCAATTTCGACCCGCCTCCTCCTCCTCCTCCTCCGCCTCCCGCTCCGATTCCCAACCCCCAAAACCAAAACGCACCGCTTCAGCTCCAATCCTCTGCTTCGCAGCCCCAGCAGCCGCCCAATCAGCACCAGCCTCCGGTCTACAACATCAACAAGAACGATTTCAGGGACGTGGTTCAGAAGCTGACCGGTTCGCCGGCCCACACGCCGGACCGGTTCGCGACTCCTCCGCCGATTCACCCGCCCAAAACCCAGAGCTCCAGGCTCCAGCGCATCCGACCTCCGCCGCTGGCCCAGCTCGCCGCCCGGCCGCCTTCTCTTCTCGACGGCGCCGTTTCGGCTCAGCCGAACAACACCAACAACAACAACAACCCTCTCATTCCGCCCATGGGAACCGCCGCGGCTCATTTCGGCGGCGTGATCGGACGGTCCACGGCGCCGCTGTCTCCTCTGCCTCCTTTTCCGACCGTCCACGCGGCGGCGGAGTCGCCGGTCTCGGCCTACATGAGGTTCCTCCACAACTCGCTCTCCGCCGGCGATTCTAATCAGAACATGAACCAGAAGCAGCAGCATTTCTCTGGATTTTCTCCCTTGGCTCCACTCGTCTCACCTCGCTGGACCAACCTGACGCCACCGCAACCGGAGCAGAGTCAGAATCAGAATCAGAATCAGAGGCAGCAGCTTCCTCAGCCGGAGCAGGCTATGGCTCCCTCGTCGGAGCCCCCACAACCTCCACAGTTTGCTTCCTCCCAGCCCCAATTCGCTATGCCACCGTCGCCGCTTCCATTCGGATGCTTGAATTCGCCTCGGTCGCAGTATAATCTGCTTTCGCCGAGTCAGTTAGGGTTTCCTCAGCTCCCTCTGTCGCCGACTGTGCCGGTTCCAAGCCCTAGGTGGAGGGGTTTCTAA

Protein Analysis

341

Amino Acids

37.01

Weight (kDa)

10.35

Isoelectric Point (pI)

85.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 82 - 107 4.1e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 44, 446, 553
AccBSI CCGCTC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 258
AccII CGCG 3 cut(s) 338, 518, 593
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 3 cut(s) 447, 554, 746
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 5 cut(s) 253, 325, 506, 595, 624
AgeI ACCGGT 2 cut(s) 305, 330
AgsI TTSAA 1 cut(s) 916
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 7 cut(s) 82, 202, 301, 375, 415, 799, 973
AluI AGCT 7 cut(s) 82, 202, 301, 375, 415, 799, 973
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 567, 616, 727
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 2 cut(s) 64, 301
AoxI GGCC 4 cut(s) 315, 408, 425, 615
ApeKI GCWGC 6 cut(s) 220, 229, 682, 685, 793, 796
ApoI RAATTY 1 cut(s) 916
AsiGI ACCGGT 2 cut(s) 305, 330
Asp700I GAANNNNTTC 1 cut(s) 278
AspA2I CCTAGG 1 cut(s) 1007
AspLEI GCGC 3 cut(s) 390, 449, 556
AspS9I GGNCC 5 cut(s) 316, 328, 409, 546, 735
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 347, 717
AvaII GGWCC 3 cut(s) 328, 546, 735
AvrII CCTAGG 1 cut(s) 1007
BanI GGYRCC 3 cut(s) 44, 446, 553
BanII GRGCYC 2 cut(s) 377, 840
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 2 cut(s) 804, 969
BbvI GCAGC 6 cut(s) 232, 241, 694, 697, 805, 808
BceAI ACGGC 3 cut(s) 434, 460, 567
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 3 cut(s) 567, 616, 727
BfaI CTAG 2 cut(s) 51, 1008
BfoI RGCGCY 2 cut(s) 450, 557
BglI GCCNNNNNGGC 1 cut(s) 455
BglII AGATCT 1 cut(s) 93
BlnI CCTAGG 1 cut(s) 1007
BlpI GCTNAGC 1 cut(s) 459
Bme1390I CCNGG 2 cut(s) 379, 424
Bme18I GGWCC 3 cut(s) 328, 546, 735
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 5 cut(s) 316, 328, 409, 546, 735
BmrFI CCNGG 2 cut(s) 379, 424
BmsI GCATC 2 cut(s) 399, 899
BpmI CTGGAG 2 cut(s) 361, 368
Bpu10I CCTNAGC 2 cut(s) 804, 969
Bpu1102I GCTNAGC 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 3 cut(s) 447, 554, 746
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 6 cut(s) 504, 516, 549, 708, 923, 1007
BsaWI WCCGGW 4 cut(s) 253, 305, 330, 757
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 629, 659
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 325, 506, 595, 624
Bse118I RCCGGY 6 cut(s) 305, 313, 330, 607, 650, 994
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 6 cut(s) 504, 516, 549, 708, 923, 1007
BseGI GGATG 2 cut(s) 390, 914
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 5 cut(s) 253, 325, 506, 595, 624
BseMII CTCAG 3 cut(s) 473, 818, 983
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 7 cut(s) 126, 129, 132, 135, 138, 333, 555
BseX3I CGGCCG 1 cut(s) 425
BseXI GCAGC 6 cut(s) 232, 241, 694, 697, 805, 808
BseYI CCCAGC 3 cut(s) 225, 411, 867
Bsh1236I CGCG 3 cut(s) 338, 518, 593
Bsh1285I CGRYCG 3 cut(s) 428, 585, 929
BshFI GGCC 4 cut(s) 317, 410, 427, 617
BshNI GGYRCC 3 cut(s) 44, 446, 553
BshTI ACCGGT 2 cut(s) 305, 330
BsiEI CGRYCG 3 cut(s) 428, 585, 929
BsiHKAI GWGCWC 1 cut(s) 377
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 5 cut(s) 253, 325, 506, 595, 624
BsmAI GTCTC 3 cut(s) 567, 616, 727
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 4 cut(s) 317, 410, 427, 617
Bso31I GGTCTC 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 377, 840
Bsp143I GATC 3 cut(s) 55, 93, 537
Bsp1720I GCTNAGC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 504
Bsp68I TCGCGA 1 cut(s) 338
BspANI GGCC 4 cut(s) 317, 410, 427, 617
BspCNI CTCAG 3 cut(s) 472, 817, 982
BspFNI CGCG 3 cut(s) 338, 518, 593
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 3 cut(s) 44, 446, 553
BspTNI GGTCTC 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 6 cut(s) 305, 313, 330, 607, 650, 994
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 6 cut(s) 305, 313, 330, 607, 650, 994
BssECI CCNNGG 6 cut(s) 504, 516, 549, 708, 923, 1007
BssMI GATC 3 cut(s) 55, 93, 537
BssNI GRCGYC 3 cut(s) 447, 554, 746
BssT1I CCWWGG 3 cut(s) 504, 708, 1007
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 5 cut(s) 546, 586, 855, 891, 991
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 3 cut(s) 447, 554, 746
BstC8I GCNNGC 5 cut(s) 315, 408, 417, 652, 816
BstDEI CTNAG 3 cut(s) 459, 804, 969
BstDSI CCRYGG 3 cut(s) 504, 516, 549
BstENI CCTNNNNNAGG 1 cut(s) 622
BstF5I GGATG 2 cut(s) 390, 914
BstFNI CGCG 3 cut(s) 338, 518, 593
BstH2I RGCGCY 2 cut(s) 450, 557
BstHHI GCGC 3 cut(s) 390, 449, 556
BstKTI GATC 3 cut(s) 58, 96, 540
BstMAI GTCTC 3 cut(s) 567, 616, 727
BstMBI GATC 3 cut(s) 55, 93, 537
BstMCI CGRYCG 3 cut(s) 428, 585, 929
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 377, 422
BstUI CGCG 3 cut(s) 338, 518, 593
BstV1I GCAGC 6 cut(s) 232, 241, 694, 697, 805, 808
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BstZI CGGCCG 1 cut(s) 425
BsuRI GGCC 4 cut(s) 317, 410, 427, 617
BtgI CCRYGG 3 cut(s) 504, 516, 549
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 390, 914
BtsIMutI CAGTG 1 cut(s) 39
BtuMI TCGCGA 1 cut(s) 338
Cac8I GCNNGC 5 cut(s) 315, 408, 417, 652, 816
CaiI CAGNNNCTG 2 cut(s) 64, 301
CfoI GCGC 3 cut(s) 390, 449, 556
Cfr10I RCCGGY 6 cut(s) 305, 313, 330, 607, 650, 994
Cfr13I GGNCC 5 cut(s) 316, 328, 409, 546, 735
Cfr42I CCGCGG 1 cut(s) 519
CpoI CGGWCCG 1 cut(s) 328
CseI GACGC 1 cut(s) 754
Csp6I GTAC 1 cut(s) 61
CspAI ACCGGT 2 cut(s) 305, 330
CspI CGGWCCG 1 cut(s) 328
CviAII CATG 3 cut(s) 505, 622, 670
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 3 cut(s) 459, 804, 969
DinI GGCGCC 2 cut(s) 448, 555
DpnI GATC 3 cut(s) 57, 95, 539
DpnII GATC 3 cut(s) 55, 93, 537
EaeI YGGCCR 1 cut(s) 425
EagI CGGCCG 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EciI GGCGGA 6 cut(s) 141, 336, 390, 489, 614, 637
Ecl136II GAGCTC 1 cut(s) 375
EclXI CGGCCG 1 cut(s) 425
Eco130I CCWWGG 3 cut(s) 504, 708, 1007
Eco24I GRGCYC 2 cut(s) 377, 840
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 3 cut(s) 328, 546, 735
Eco52I CGGCCG 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 622
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 3 cut(s) 504, 708, 1007
EcoT38I GRGCYC 2 cut(s) 377, 840
EgeI GGCGCC 2 cut(s) 448, 555
EheI GGCGCC 2 cut(s) 448, 555
ErhI CCWWGG 3 cut(s) 504, 708, 1007
Esp3I CGTCTC 1 cut(s) 727
FaeI CATG 3 cut(s) 508, 625, 673
FaiI YATR 6 cut(s) 506, 623, 671, 821, 884, 936
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 504, 621, 669
FauI CCCGC 3 cut(s) 138, 166, 366
FblI GTMKAC 1 cut(s) 258
FokI GGATG 2 cut(s) 377, 921
FriOI GRGCYC 2 cut(s) 377, 840
FspBI CTAG 2 cut(s) 51, 1008
GlaI GCGC 3 cut(s) 389, 448, 555
GsaI CCCAGC 3 cut(s) 229, 415, 871
GsuI CTGGAG 2 cut(s) 361, 368
HaeII RGCGCY 2 cut(s) 450, 557
HaeIII GGCC 4 cut(s) 317, 410, 427, 617
HgaI GACGC 1 cut(s) 754
HhaI GCGC 3 cut(s) 390, 449, 556
Hin1I GRCGYC 3 cut(s) 447, 554, 746
Hin1II CATG 3 cut(s) 508, 625, 673
Hin6I GCGC 3 cut(s) 388, 447, 554
HinP1I GCGC 3 cut(s) 388, 447, 554
HindIII AAGCTT 1 cut(s) 80
HphI GGTGA 2 cut(s) 347, 717
Hpy166II GTNNAC 3 cut(s) 259, 549, 589
Hpy188III TCNNGA 3 cut(s) 337, 440, 696
Hpy8I GTNNAC 3 cut(s) 259, 549, 589
Hpy99I CGWCG 3 cut(s) 446, 835, 895
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 5 cut(s) 546, 586, 855, 891, 991
HpyCH4IV ACGT 1 cut(s) 288
HpyF3I CTNAG 3 cut(s) 459, 804, 969
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 3 cut(s) 447, 554, 746
Hsp92II CATG 3 cut(s) 508, 625, 673
HspAI GCGC 3 cut(s) 388, 447, 554
KasI GGCGCC 2 cut(s) 446, 553
KroI GCCGGC 2 cut(s) 313, 650
KroNI GCCGGC 2 cut(s) 315, 652
KspI CCGCGG 1 cut(s) 519
Kzo9I GATC 3 cut(s) 55, 93, 537
Lsp1109I GCAGC 6 cut(s) 232, 241, 694, 697, 805, 808
LweI GCATC 2 cut(s) 399, 899
MaeI CTAG 2 cut(s) 51, 1008
MaeII ACGT 1 cut(s) 288
MalI GATC 3 cut(s) 57, 95, 539
MbiI CCGCTC 1 cut(s) 161
MboI GATC 3 cut(s) 55, 93, 537
MboII GAAGA 4 cut(s) 9, 12, 15, 428
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 377, 840
MluCI AATT 3 cut(s) 121, 875, 916
Mly113I GGCGCC 2 cut(s) 447, 554
MlyI GAGTC 4 cut(s) 334, 611, 775, 961
MmeI TCCRAC 3 cut(s) 418, 605, 813
MreI CGCCGGCG 1 cut(s) 650
MroNI GCCGGC 2 cut(s) 313, 650
MroXI GAANNNNTTC 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 907
MspA1I CMGCKG 3 cut(s) 406, 518, 559
MspR9I CCNGG 2 cut(s) 379, 424
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 3 cut(s) 338, 518, 593
NaeI GCCGGC 2 cut(s) 315, 652
NarI GGCGCC 2 cut(s) 447, 554
NciI CCSGG 1 cut(s) 424
NcoI CCATGG 1 cut(s) 504
NdeII GATC 3 cut(s) 55, 93, 537
NgoMIV GCCGGC 2 cut(s) 313, 650
NlaIII CATG 3 cut(s) 508, 625, 673
NmeAIII GCCGAG 2 cut(s) 593, 975
NruI TCGCGA 1 cut(s) 338
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 461
PdiI GCCGGC 2 cut(s) 315, 652
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 6 cut(s) 166, 352, 656, 772, 778, 784
PinAI ACCGGT 2 cut(s) 305, 330
PleI GAGTC 4 cut(s) 334, 610, 774, 960
PluTI GGCGCC 2 cut(s) 450, 557
PpsI GAGTC 4 cut(s) 334, 610, 774, 960
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 377
PspFI CCCAGC 3 cut(s) 225, 411, 867
PspGI CCWGG 1 cut(s) 377
PspPI GGNCC 5 cut(s) 316, 328, 409, 546, 735
PstNI CAGNNNCTG 2 cut(s) 64, 301
PsuI RGATCY 1 cut(s) 93
RruI TCGCGA 1 cut(s) 338
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 907
Rsr2I CGGWCCG 1 cut(s) 328
RsrII CGGWCCG 1 cut(s) 328
SacI GAGCTC 1 cut(s) 377
SacII CCGCGG 1 cut(s) 519
Sau3AI GATC 3 cut(s) 55, 93, 537
Sau96I GGNCC 5 cut(s) 316, 328, 409, 546, 735
SchI GAGTC 4 cut(s) 334, 611, 775, 961
ScrFI CCNGG 2 cut(s) 379, 424
SduI GDGCHC 2 cut(s) 377, 840
SfaNI GCATC 2 cut(s) 399, 899
SfoI GGCGCC 2 cut(s) 448, 555
Sfr303I CCGCGG 1 cut(s) 519
SgrAI CRCCGGYG 1 cut(s) 650
SgrBI CCGCGG 1 cut(s) 519
SinI GGWCC 3 cut(s) 328, 546, 735
SmiMI CAYNNNNRTG 1 cut(s) 907
Sse9I AATT 3 cut(s) 121, 875, 916
SspDI GGCGCC 2 cut(s) 446, 553
SspMI CTAG 2 cut(s) 51, 1008
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 377, 422
StyI CCWWGG 3 cut(s) 504, 708, 1007
TaaI ACNGT 5 cut(s) 546, 586, 855, 891, 991
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 126, 441
TaqII GACCGA 1 cut(s) 915
TasI AATT 3 cut(s) 121, 875, 916
TfiI GAWTC 6 cut(s) 166, 352, 656, 772, 778, 784
TscAI CASTG 1 cut(s) 46
TseI GCWGC 6 cut(s) 220, 229, 682, 685, 793, 796
TspDTI ATGAA 1 cut(s) 686
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 3 cut(s) 328, 546, 735
XagI CCTNNNNNAGG 1 cut(s) 622
XapI RAATTY 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 1008
XmaJI CCTAGG 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 51, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.