Rw7G039240

VQ motif

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
60302138 .. 60303166
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039240.1

Sequence Viewer

Length: 1029 bp
ATGGATAAGACCTCATCTTCTTCTTCTACTGAAAACTCCACTGGTGCCACTAGGGATCAGTACCTGAAACACCTCAACAAGCTTTCCCACAAGATCTCCAAGCCCACAATCCGAAAACCCAATTTCGACCCGCCTCCTCCTCCTCCTCCTCCGCCTCCCGCTCCGATTCCCAACCCCCAAAACCAAAACGCACCGCTTCAGCTCCAATCATCTGCTTCGCAGCCTCAGCAGCCCCCCCAGCAGCCGCCCAATCAGCACCAACCTCCGGTCTACAACATCAACAAGAACGATTTCAGGGACGTGGTTCAGAAGCTGACCGGTTCGCCGGCCCACACGCCGGACCGGTTCGCGACTCCTCCGCCGATTCACCCGCCCAAAACCCAGAGCTCGAGGCTCCAGCGCATCCGCCCTCCGCCGCTGGCCCAGCTCGCCGCCCGGCCGCCTTCTCTTCTCGACGGCGCCGTTTCGGCTCAGCCGAACAACACCAACAACAACAACCCTCTCATTCCGCCCATGGGAACCGCCGCGGCTCATTTCGGCGGCGTGATCGGACGGTCCACAGCGCCGCTGTCTCCTCTGCCTCCTTTTCCGACCGTCCACGCGGCGGCGGAGTCGCCGGTCTCGGCCTACATGAGGTTCCTCCACAACTCGCTCTCCGCCGGCGATTCTAATCAGAACATGAACCAGAAGCAGCAGCATTTCTCTGGATTTTCTCCCTTGGCTCCACTCGTCTCGCCTCGCTGGACCAACCTGACGCCACCGCAACCGGAGCAGAGTCAGAATCAGAATCAGAGCCAGCAGCTTCCTCAGCCGCAGCAGGCTATGGCTCCCTCGTCGGAGCCCCCACAACCTCCACAGTTTGCTTCCTCCCAGCCCCAATTCGCTATGCCACCGTCGCCGCTTCCATTCGGATGCTTGAATTCCCCTCGGTCGCAGTATAATCTGCTTTCGCCGAGTCAGTTAGGGTTTCCTCAGCTCCCTCTGTCGCCGACTGTGCCGGTTCCAAGCCCTAGGTGGAGGGGTTTCTAA

Protein Analysis

342

Amino Acids

37.03

Weight (kDa)

10.36

Isoelectric Point (pI)

89.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 86 - 111 4.1e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013152)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 44, 458
AccBSI CCGCTC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 270
AccII CGCG 3 cut(s) 350, 527, 602
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 2 cut(s) 459, 755
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 5 cut(s) 265, 337, 515, 604, 633
AgeI ACCGGT 2 cut(s) 317, 342
AgsI TTSAA 1 cut(s) 919
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 7 cut(s) 82, 202, 313, 387, 427, 802, 976
AluI AGCT 7 cut(s) 82, 202, 313, 387, 427, 802, 976
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 3 cut(s) 576, 625, 736
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 2 cut(s) 64, 313
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 4 cut(s) 327, 420, 437, 624
ApeKI GCWGC 7 cut(s) 220, 229, 241, 691, 694, 799, 814
ApoI RAATTY 1 cut(s) 919
AsiGI ACCGGT 2 cut(s) 317, 342
Asp700I GAANNNNTTC 1 cut(s) 290
AspA2I CCTAGG 1 cut(s) 1010
AspLEI GCGC 3 cut(s) 402, 461, 565
AspS9I GGNCC 5 cut(s) 328, 340, 421, 555, 744
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 3 cut(s) 340, 555, 744
AvrII CCTAGG 1 cut(s) 1010
BanI GGYRCC 2 cut(s) 44, 458
BanII GRGCYC 2 cut(s) 389, 843
Bbv12I GWGCWC 1 cut(s) 389
BbvCI CCTCAGC 3 cut(s) 225, 807, 972
BbvI GCAGC 7 cut(s) 232, 241, 253, 703, 706, 811, 826
BceAI ACGGC 2 cut(s) 446, 472
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 576, 625, 736
BfaI CTAG 2 cut(s) 51, 1011
BfoI RGCGCY 2 cut(s) 462, 566
BglI GCCNNNNNGGC 1 cut(s) 467
BglII AGATCT 1 cut(s) 93
BlnI CCTAGG 1 cut(s) 1010
BlpI GCTNAGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 3 cut(s) 340, 555, 744
BmeT110I CYCGRG 1 cut(s) 388
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 5 cut(s) 328, 340, 421, 555, 744
BmiI GGNNCC 9 cut(s) 46, 395, 460, 520, 638, 723, 828, 840, 1002
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 411, 902
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 3 cut(s) 225, 807, 972
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 436
BsaBI GATNNNNATC 1 cut(s) 669
BsaHI GRCGYC 2 cut(s) 459, 755
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 5 cut(s) 513, 525, 717, 926, 1010
BsaWI WCCGGW 4 cut(s) 265, 317, 342, 766
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 638, 668
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 337, 515, 604, 633
Bse118I RCCGGY 6 cut(s) 317, 325, 342, 616, 659, 997
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 5 cut(s) 513, 525, 717, 926, 1010
BseGI GGATG 2 cut(s) 402, 917
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 5 cut(s) 265, 337, 515, 604, 633
BseMII CTCAG 4 cut(s) 239, 485, 821, 986
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 7 cut(s) 126, 129, 132, 135, 138, 345, 564
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 7 cut(s) 232, 241, 253, 703, 706, 811, 826
BseYI CCCAGC 3 cut(s) 237, 423, 870
Bsh1236I CGCG 3 cut(s) 350, 527, 602
Bsh1285I CGRYCG 3 cut(s) 440, 594, 932
BshFI GGCC 4 cut(s) 329, 422, 439, 626
BshNI GGYRCC 2 cut(s) 44, 458
BshTI ACCGGT 2 cut(s) 317, 342
BsiEI CGRYCG 3 cut(s) 440, 594, 932
BsiHKAI GWGCWC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 388
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 5 cut(s) 265, 337, 515, 604, 633
BsmAI GTCTC 3 cut(s) 576, 625, 736
BsmBI CGTCTC 1 cut(s) 736
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 4 cut(s) 329, 422, 439, 626
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 389, 843
Bsp143I GATC 3 cut(s) 55, 93, 546
Bsp1720I GCTNAGC 1 cut(s) 471
Bsp19I CCATGG 1 cut(s) 513
Bsp68I TCGCGA 1 cut(s) 350
BspANI GGCC 4 cut(s) 329, 422, 439, 626
BspCNI CTCAG 4 cut(s) 238, 484, 820, 985
BspFNI CGCG 3 cut(s) 350, 527, 602
BspLI GGNNCC 9 cut(s) 46, 395, 460, 520, 638, 723, 828, 840, 1002
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 44, 458
BspTNI GGTCTC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 6 cut(s) 317, 325, 342, 616, 659, 997
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 6 cut(s) 317, 325, 342, 616, 659, 997
BssECI CCNNGG 5 cut(s) 513, 525, 717, 926, 1010
BssMI GATC 3 cut(s) 55, 93, 546
BssNI GRCGYC 2 cut(s) 459, 755
BssT1I CCWWGG 3 cut(s) 513, 717, 1010
Bst4CI ACNGT 5 cut(s) 555, 595, 858, 894, 994
Bst6I CTCTTC 1 cut(s) 453
BstACI GRCGYC 2 cut(s) 459, 755
BstC8I GCNNGC 6 cut(s) 327, 420, 429, 661, 797, 819
BstDEI CTNAG 4 cut(s) 225, 471, 807, 972
BstDSI CCRYGG 2 cut(s) 513, 525
BstENI CCTNNNNNAGG 1 cut(s) 631
BstF5I GGATG 2 cut(s) 402, 917
BstFNI CGCG 3 cut(s) 350, 527, 602
BstH2I RGCGCY 2 cut(s) 462, 566
BstHHI GCGC 3 cut(s) 402, 461, 565
BstKTI GATC 3 cut(s) 58, 96, 549
BstMAI GTCTC 3 cut(s) 576, 625, 736
BstMBI GATC 3 cut(s) 55, 93, 546
BstMCI CGRYCG 3 cut(s) 440, 594, 932
BstSCI CCNGG 1 cut(s) 434
BstUI CGCG 3 cut(s) 350, 527, 602
BstV1I GCAGC 7 cut(s) 232, 241, 253, 703, 706, 811, 826
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BstZI CGGCCG 1 cut(s) 437
BsuRI GGCC 4 cut(s) 329, 422, 439, 626
BtgI CCRYGG 2 cut(s) 513, 525
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 402, 917
BtsIMutI CAGTG 1 cut(s) 39
BtuMI TCGCGA 1 cut(s) 350
Cac8I GCNNGC 6 cut(s) 327, 420, 429, 661, 797, 819
CaiI CAGNNNCTG 2 cut(s) 64, 313
CfoI GCGC 3 cut(s) 402, 461, 565
Cfr10I RCCGGY 6 cut(s) 317, 325, 342, 616, 659, 997
Cfr13I GGNCC 5 cut(s) 328, 340, 421, 555, 744
Cfr42I CCGCGG 1 cut(s) 528
CpoI CGGWCCG 1 cut(s) 340
CseI GACGC 1 cut(s) 763
Csp6I GTAC 1 cut(s) 61
CspAI ACCGGT 2 cut(s) 317, 342
CspI CGGWCCG 1 cut(s) 340
CviAII CATG 3 cut(s) 514, 631, 679
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 4 cut(s) 225, 471, 807, 972
DinI GGCGCC 1 cut(s) 460
DpnI GATC 3 cut(s) 57, 95, 548
DpnII GATC 3 cut(s) 55, 93, 546
EaeI YGGCCR 1 cut(s) 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EciI GGCGGA 7 cut(s) 141, 348, 395, 402, 498, 623, 646
Ecl136II GAGCTC 1 cut(s) 387
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 3 cut(s) 513, 717, 1010
Eco24I GRGCYC 2 cut(s) 389, 843
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 3 cut(s) 340, 555, 744
Eco52I CGGCCG 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 387
EcoNI CCTNNNNNAGG 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 919
EcoT14I CCWWGG 3 cut(s) 513, 717, 1010
EcoT38I GRGCYC 2 cut(s) 389, 843
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
ErhI CCWWGG 3 cut(s) 513, 717, 1010
Esp3I CGTCTC 1 cut(s) 736
FaeI CATG 3 cut(s) 517, 634, 682
FaiI YATR 6 cut(s) 515, 632, 680, 824, 887, 939
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 513, 630, 678
FauI CCCGC 3 cut(s) 138, 166, 378
FblI GTMKAC 1 cut(s) 270
FokI GGATG 2 cut(s) 389, 924
FriOI GRGCYC 2 cut(s) 389, 843
FspBI CTAG 2 cut(s) 51, 1011
GlaI GCGC 3 cut(s) 401, 460, 564
GsaI CCCAGC 3 cut(s) 241, 427, 874
GsuI CTGGAG 1 cut(s) 380
HaeII RGCGCY 2 cut(s) 462, 566
HaeIII GGCC 4 cut(s) 329, 422, 439, 626
HgaI GACGC 1 cut(s) 763
HhaI GCGC 3 cut(s) 402, 461, 565
Hin1I GRCGYC 2 cut(s) 459, 755
Hin1II CATG 3 cut(s) 517, 634, 682
Hin6I GCGC 3 cut(s) 400, 459, 563
HinP1I GCGC 3 cut(s) 400, 459, 563
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 9 cut(s) 166, 352, 364, 611, 665, 775, 781, 787, 955
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 3 cut(s) 271, 558, 598
Hpy188III TCNNGA 3 cut(s) 349, 452, 705
Hpy8I GTNNAC 3 cut(s) 271, 558, 598
Hpy99I CGWCG 3 cut(s) 458, 838, 898
HpyAV CCTTC 1 cut(s) 453
HpyCH4III ACNGT 5 cut(s) 555, 595, 858, 894, 994
HpyCH4IV ACGT 1 cut(s) 300
HpyF3I CTNAG 4 cut(s) 225, 471, 807, 972
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 459, 755
Hsp92II CATG 3 cut(s) 517, 634, 682
HspAI GCGC 3 cut(s) 400, 459, 563
KasI GGCGCC 1 cut(s) 458
KroI GCCGGC 2 cut(s) 325, 659
KroNI GCCGGC 2 cut(s) 327, 661
KspI CCGCGG 1 cut(s) 528
Kzo9I GATC 3 cut(s) 55, 93, 546
LmnI GCTCC 8 cut(s) 166, 207, 399, 727, 769, 832, 838, 981
Lsp1109I GCAGC 7 cut(s) 232, 241, 253, 703, 706, 811, 826
LweI GCATC 2 cut(s) 411, 902
MaeI CTAG 2 cut(s) 51, 1011
MaeII ACGT 1 cut(s) 300
MalI GATC 3 cut(s) 57, 95, 548
MbiI CCGCTC 1 cut(s) 161
MboI GATC 3 cut(s) 55, 93, 546
MboII GAAGA 4 cut(s) 9, 12, 15, 440
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 389, 843
MluCI AATT 3 cut(s) 121, 878, 919
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 4 cut(s) 346, 620, 784, 964
MmeI TCCRAC 2 cut(s) 614, 816
MreI CGCCGGCG 1 cut(s) 659
MroNI GCCGGC 2 cut(s) 325, 659
MroXI GAANNNNTTC 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 910
MspA1I CMGCKG 3 cut(s) 418, 527, 568
MspR9I CCNGG 1 cut(s) 436
MvnI CGCG 3 cut(s) 350, 527, 602
NaeI GCCGGC 2 cut(s) 327, 661
NarI GGCGCC 1 cut(s) 459
NciI CCSGG 1 cut(s) 436
NcoI CCATGG 1 cut(s) 513
NdeII GATC 3 cut(s) 55, 93, 546
NgoMIV GCCGGC 2 cut(s) 325, 659
NlaIII CATG 3 cut(s) 517, 634, 682
NlaIV GGNNCC 9 cut(s) 46, 395, 460, 520, 638, 723, 828, 840, 1002
NmeAIII GCCGAG 2 cut(s) 602, 978
NruI TCGCGA 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 388
PcsI WCGNNNNNNNCGW 2 cut(s) 459, 473
PdiI GCCGGC 2 cut(s) 327, 661
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 5 cut(s) 166, 364, 665, 781, 787
PinAI ACCGGT 2 cut(s) 317, 342
PleI GAGTC 4 cut(s) 346, 619, 783, 963
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 4 cut(s) 346, 619, 783, 963
Psp124BI GAGCTC 1 cut(s) 389
PspFI CCCAGC 3 cut(s) 237, 423, 870
PspN4I GGNNCC 9 cut(s) 46, 395, 460, 520, 638, 723, 828, 840, 1002
PspPI GGNCC 5 cut(s) 328, 340, 421, 555, 744
PspXI VCTCGAGB 1 cut(s) 388
PstNI CAGNNNCTG 2 cut(s) 64, 313
PsuI RGATCY 1 cut(s) 93
RruI TCGCGA 1 cut(s) 350
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 910
Rsr2I CGGWCCG 1 cut(s) 340
RsrII CGGWCCG 1 cut(s) 340
SacI GAGCTC 1 cut(s) 389
SacII CCGCGG 1 cut(s) 528
Sau3AI GATC 3 cut(s) 55, 93, 546
Sau96I GGNCC 5 cut(s) 328, 340, 421, 555, 744
SchI GAGTC 4 cut(s) 346, 620, 784, 964
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 2 cut(s) 389, 843
SfaNI GCATC 2 cut(s) 411, 902
SfoI GGCGCC 1 cut(s) 460
Sfr274I CTCGAG 1 cut(s) 388
Sfr303I CCGCGG 1 cut(s) 528
SgrAI CRCCGGYG 1 cut(s) 659
SgrBI CCGCGG 1 cut(s) 528
SinI GGWCC 3 cut(s) 340, 555, 744
SlaI CTCGAG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 910
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 3 cut(s) 121, 878, 919
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 2 cut(s) 51, 1011
SstI GAGCTC 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 3 cut(s) 513, 717, 1010
TaaI ACNGT 5 cut(s) 555, 595, 858, 894, 994
TaiI ACGT 1 cut(s) 303
TaqI TCGA 3 cut(s) 126, 389, 453
TaqII GACCGA 1 cut(s) 918
TasI AATT 3 cut(s) 121, 878, 919
TfiI GAWTC 5 cut(s) 166, 364, 665, 781, 787
TscAI CASTG 1 cut(s) 46
TseI GCWGC 7 cut(s) 220, 229, 241, 691, 694, 799, 814
TspDTI ATGAA 1 cut(s) 695
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 3 cut(s) 340, 555, 744
XagI CCTNNNNNAGG 1 cut(s) 631
XapI RAATTY 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 1011
XhoI CTCGAG 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 51, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.